TCONS_00056067-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056067-protein
Unique NameTCONS_00056067-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056067-protein ID=TCONS_00056067-protein|Name=TCONS_00056067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MLQCSRPTPIGSIRRLAVIAIFAYAAFKFYGRENTPDYTSKSHGATSRHL
LSAFEWEQCNFEIGHTRNYSNPDSWYSPASAKGWVALYCILILIVFVALA
IICDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTVES
DVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDAAFYCFSICF
FIIFAWDGKFEIYESVILLALYFLYILLMKFNPKLMEKMAQWGSRKVDPS
SDNSNKSDKEDGTETDALSSVLVARDGYGDMAVSNAIGSNVFDIDLGLGF
PFLISSLIRNFEPVSILSKEEQVQYDNGEIVMIPHVKFGFILLLVLAMSL
IVFGAAKFKLNKYLGLTFVIFYIIFVAYAYIQDLVCNGNC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035286XLOC_035286Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056067TCONS_00056067Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004837Sodium/calcium exchanger membrane regionPFAMPF01699Na_Ca_excoord: 266..380
e-value: 2.8E-14
score: 53.3
coord: 90..228
e-value: 2.2E-27
score: 95.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..265

Blast
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BLAST of TCONS_00056067-protein vs. Swiss-Prot (Human)
Match: NCKX3 (Sodium/potassium/calcium exchanger 3 OS=Homo sapiens GN=SLC24A3 PE=2 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 3.091e-47
Identity = 91/191 (47.64%), Postives = 129/191 (67.54%), Query Frame = 0 
Query:   82 KGWVALYCILILIVFVALAIICDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTV-ESDVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDAAFYCFSICFFIIFAWDGKFEIYESVILLALYFLYILLMKFNP---KLMEKMAQWGSRKVDPSSDNSNKSDKEDGTETDAL 268
            +G V L+ +  + +F ALAI+CDDFFVPSLE I E+L LSEDVAGATFMAAGSSAPELFTS++GV + + DVGVGTIVGSA+FN+L I+ +   FAGQV+ L    L RD+ +Y  S+   I+F +D K   +ES++L+ +Y +YI++MK+N    +  E+  +     V+  ++N+   D  +   T  L
Sbjct:  107 QGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYNACIHQCFERRTKGAGNMVNGLANNAEIDDSSNCDATVVL 297
The following BLAST results are available for this feature:
BLAST of TCONS_00056067-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX33.091e-4747.64Sodium/potassium/calcium exchanger 3 OS=Homo sapie... [more]
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