TCONS_00057272-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057272-protein
Unique NameTCONS_00057272-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057272-protein ID=TCONS_00057272-protein|Name=TCONS_00057272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
MKTVTFLLLLTSELTFHIEALTKPIPPSNPIKISSGNTVFNSRHILKKNQ
RAKLEFVSRTTGGSEGYRRVYDASANLLIPCSHFKTDGQIVKIHETSICQ
QPSQVMSFPYKWIAYVNRRHLRNNGHGCRSTSALIQRLFKSGAQAVILSS
SLIILNGGTKALQKSGPVVIVDGDVAERIDQVLKIQQKTFVRIKSQQRQP
SRQRDTESGNVETEEKNEYLDMGIFMSFFIIVSLVCLAMLIKIKWKQTYL
RNTRTKIAVEALQTMQIRHYDVTARLRNDDVNSETFNNCAVCLDVLENGK
DIRILPCHHEFHVTCIDKWLISNYTCPLCMHSIIGTHKSKSKHRSRNPFC
NLHFDKFRNNLSTTTRNPQQPEQEEEEEIRNTLENTQHIEDNSWNVHRQT
DQQSRHSSKTTTLVQHYSNHNVTGLQDSKTTREQRVPLLLNCGDTEHACA
VKRQHHYGHYRCPFHKKHSTDVSYKQHKKQENKNQSSNNLQTNADACEFL
SKSCHDIEDDDGPQNTRFLDHKQRRHSFPIETVVFIENEQNLQASNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036077XLOC_036077Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057272TCONS_00057272Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 372..392
NoneNo IPR availableGENE3D3.50.30.30coord: 45..189
e-value: 4.3E-9
score: 35.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 471..490
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..431
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 288..334
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 289..329
e-value: 1.5E-8
score: 44.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 288..329
e-value: 5.6E-12
score: 45.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 289..329
score: 12.519
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 289..333
e-value: 1.86097E-10
score: 55.9148
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 190..360
e-value: 7.4E-17
score: 60.6

Blast
[Close]
BLAST of TCONS_00057272-protein vs. Swiss-Prot (Human)
Match: ZNRF3 (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 6.786e-39
Identity = 85/263 (32.32%), Postives = 142/263 (53.99%), Query Frame = 0 
Query:   84 FKTDGQIVKIHETSICQQPSQVMSFPYKWIAYVNRRHLRNNGHGCRSTSALIQRLFKSGAQAVILSSS-----LIILNGGTKALQKSGPVVIVDGDVAERIDQVLKIQQKTFVRIKSQQRQPSRQRDTESGNVETEEKNEYLDMGIFMSFFIIVSLVCLAMLIKIKWKQTYLRNTRTKIAVEALQTMQIRHYDVTARLRNDD-------VNSETFNNCAVCLDVLENGKDIRILPCHHEFHVTCIDKWLISNYTCPLCMHSII 334
               +G+IV++H   +C    +   + Y W+  V       +   C +     +R  + GA AVI   S     +  LN G++   K  PVV V G  A ++  ++  Q+    RI   Q +P RQ              EY DMGIF++FF++VSLVCL +L+KIK KQ   +N+  ++AV+AL+ M+ R ++  ++ R +        ++S + ++CA+CL+   +G+++R++PC H FH  C+D WL+ ++TCP C H+II
Sbjct:   92 LSAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKR-PVVYVKGADAIKLMNIVNKQKVARARI---QHRPPRQ------------PTEYFDMGIFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338
The following BLAST results are available for this feature:
BLAST of TCONS_00057272-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNRF36.786e-3932.32E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens ... [more]
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