Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00057272-protein ID=TCONS_00057272-protein|Name=TCONS_00057272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp MKTVTFLLLLTSELTFHIEALTKPIPPSNPIKISSGNTVFNSRHILKKNQ RAKLEFVSRTTGGSEGYRRVYDASANLLIPCSHFKTDGQIVKIHETSICQ QPSQVMSFPYKWIAYVNRRHLRNNGHGCRSTSALIQRLFKSGAQAVILSS SLIILNGGTKALQKSGPVVIVDGDVAERIDQVLKIQQKTFVRIKSQQRQP SRQRDTESGNVETEEKNEYLDMGIFMSFFIIVSLVCLAMLIKIKWKQTYL RNTRTKIAVEALQTMQIRHYDVTARLRNDDVNSETFNNCAVCLDVLENGK DIRILPCHHEFHVTCIDKWLISNYTCPLCMHSIIGTHKSKSKHRSRNPFC NLHFDKFRNNLSTTTRNPQQPEQEEEEEIRNTLENTQHIEDNSWNVHRQT DQQSRHSSKTTTLVQHYSNHNVTGLQDSKTTREQRVPLLLNCGDTEHACA VKRQHHYGHYRCPFHKKHSTDVSYKQHKKQENKNQSSNNLQTNADACEFL SKSCHDIEDDDGPQNTRFLDHKQRRHSFPIETVVFIENEQNLQASNL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 Score = Expect = 4.3E-9 / Score = 35.8 Score = Score = Score = Score = Expect = 1.5E-8 / Score = 44.4 Expect = 5.6E-12 / Score = 45.7 Score = 12.519 Expect = 1.86097E-10 / Score = 55.9148 Expect = 7.4E-17 / Score = 60.6 Sequence Coil G3DSA:3.50.30.30 mobidb-lite mobidb-lite mobidb-lite SSF57850 SM00184 PF13639 PS50089 cd00162 G3DSA:3.30.40.10
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 372..392
None No IPR available GENE3D 3.50.30.30 coord: 45..189 e-value: 4.3E-9 score: 35.8
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 361..380
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 471..490
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 397..431
None No IPR available SUPERFAMILY 57850 RING/U-box coord: 288..334
IPR001841 Zinc finger, RING-type SMART SM00184 ring_2 coord: 289..329 e-value: 1.5E-8 score: 44.4
IPR001841 Zinc finger, RING-type PFAM PF13639 zf-RING_2 coord: 288..329 e-value: 5.6E-12 score: 45.7
IPR001841 Zinc finger, RING-type PROSITE PS50089 ZF_RING_2 coord: 289..329 score: 12.519
IPR001841 Zinc finger, RING-type CDD cd00162 RING coord: 289..333 e-value: 1.86097E-10 score: 55.9148
IPR013083 Zinc finger, RING/FYVE/PHD-type GENE3D 3.30.40.10 coord: 190..360 e-value: 7.4E-17 score: 60.6
Blast
BLAST of TCONS_00057272-protein vs. Swiss-Prot (Human)
Match:
ZNRF3 (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)
HSP 1 Score: 152.14 bits (383), Expect = 6.786e-39
Identity = 85/263 (32.32%), Postives = 142/263 (53.99%), Query Frame = 0
Query: 84 FKTDGQIVKIHETSICQQPSQVMSFPYKWIAYVNRRHLRNNGHGCRSTSALIQRLFKSGAQAVILSSS-----LIILNGGTKALQKSGPVVIVDGDVAERIDQVLKIQQKTFVRIKSQQRQPSRQRDTESGNVETEEKNEYLDMGIFMSFFIIVSLVCLAMLIKIKWKQTYLRNTRTKIAVEALQTMQIRHYDVTARLRNDD-------VNSETFNNCAVCLDVLENGKDIRILPCHHEFHVTCIDKWLISNYTCPLCMHSII 334
+G+IV++H +C + + Y W+ V + C + +R + GA AVI S + LN G++ K PVV V G A ++ ++ Q+ RI Q +P RQ EY DMGIF++FF++VSLVCL +L+KIK KQ +N+ ++AV+AL+ M+ R ++ ++ R + ++S + ++CA+CL+ +G+++R++PC H FH C+D WL+ ++TCP C H+II
Sbjct: 92 LSAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKR-PVVYVKGADAIKLMNIVNKQKVARARI---QHRPPRQ------------PTEYFDMGIFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338
The following BLAST results are available for this feature: