TCONS_00057378-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057378-protein
Unique NameTCONS_00057378-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length171

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057378-protein ID=TCONS_00057378-protein|Name=TCONS_00057378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MRVGTAFASLMRRKKRVGLERRIGYISPENNAGIWHGASVKSGFTETFSG
KKTKRFWYPNVSEKEIYSDILDEKIKTTFTAKALREIDNAGGFDNYIMRT
PDKVLCSNFAIELKRQMETVQRFSKHTDMSLEEIKAEITPVKLSKHVWIQ
RDYTNRFYFDWKGPRKHMVFC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036149XLOC_036149Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057378TCONS_00057378Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026569Ribo_L28/L24
IPR034704L28p-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026569Ribosomal protein L28/L24GENE3D2.30.170.40coord: 31..104
e-value: 4.0E-19
score: 67.9
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 37..89
e-value: 1.2E-10
score: 41.3
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 32..102

Blast
[Close]
BLAST of TCONS_00057378-protein vs. Swiss-Prot (Human)
Match: RM28 (39S ribosomal protein L28, mitochondrial OS=Homo sapiens GN=MRPL28 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 1.757e-17
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 0 
Query:   25 YISPENNAGIWHGASVKSGFTETFSGKKTKRF---WYPNVSEKEIYSDILDEKIKTTFTAKALREIDNAGGFDNYIMRTPDKVLCSNFAIELKRQM 117
            Y  PE+  G+W G     G     + K +KR    W P + E+E YS+ILD+K   T T + L  ID A G D YI++TP + LCS F ++LKR M
Sbjct:   70 YFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGM 165
The following BLAST results are available for this feature:
BLAST of TCONS_00057378-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM281.757e-1741.6739S ribosomal protein L28, mitochondrial OS=Homo s... [more]
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