TCONS_00059793-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059793-protein
Unique NameTCONS_00059793-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059793-protein ID=TCONS_00059793-protein|Name=TCONS_00059793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MEEIGISPSLNGTPTSRPTTTTNATTQTTDPNIDDLYIKYKKLQKQLEFL
AVQEEYIKDEQKNLKKEYLHAQEEVKRIQSVPLVIGQFLEAIDQNTGIVG
STTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDILPPEADSSIAML
AADEKPDVSYADIGGMDIQKQEMREAVELPLTHFELYKQIGIDPPRGVLM
YGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLA
KENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN
VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITGKMNL
SDEVDLEDYVARPDKISGADINAIVQEAGMQAVRENRYVVLAKDFEKGYK
NNIKKDEQEHEFYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037617XLOC_037617Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059793TCONS_00059793Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR00593726S_Psome_P45
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030163 protein catabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableGENE3D3.40.50.300coord: 142..345
e-value: 1.3E-59
score: 201.1
NoneNo IPR availableGENE3D1.10.8.60coord: 346..414
e-value: 2.3E-18
score: 65.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableCDDcd00009AAAcoord: 164..331
e-value: 3.47334E-27
score: 104.535
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 194..333
e-value: 4.3E-24
score: 96.0
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 198..331
e-value: 4.8E-44
score: 149.9
IPR00593726S proteasome subunit P45TIGRFAMTIGR01242TIGR01242coord: 41..398
e-value: 1.5E-135
score: 450.0
IPR003960ATPase, AAA-type, conserved sitePROSITEPS00674AAAcoord: 301..319
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 156..403

Blast
[Close]
BLAST of TCONS_00059793-protein vs. Swiss-Prot (Human)
Match: PRS6B (26S proteasome regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 363/419 (86.63%), Postives = 384/419 (91.65%), Query Frame = 0 
Query:    1 MEEIGI-----SPSLNGTPTSRPTTTTNATTQTTDPNIDDLYIKYKKLQKQLEFLAVQEEYIKDEQKNLKKEYLHAQEEVKRIQSVPLVIGQFLEAIDQNTGIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDILPPEADSSIAMLAADEKPDVSYADIGGMDIQKQEMREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITGKMNLSDEVDLEDYVARPDKISGADINAIVQEAGMQAVRENRYVVLAKDFEKGYKNNIKKDEQEHEFYK 414
            MEEIGI        +     SRP T  +      + +++DLY +YKKLQ++LEFL VQEEYIKDEQKNLKKE+LHAQEEVKRIQS+PLVIGQFLEA+DQNT IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVD+LPPEADSSI ML +D+KPDV YADIGGMDIQKQE+REAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTA+FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTIT KMNLS+EVDLEDYVARPDKISGADIN+I QE+GM AVRENRY+VLAKDFEK YK  IKKDEQEHEFYK
Sbjct:    1 MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPE-DLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
The following BLAST results are available for this feature:
BLAST of TCONS_00059793-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS6B0.000e+086.6326S proteasome regulatory subunit 6B OS=Homo sapie... [more]
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