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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059793-protein ID=TCONS_00059793-protein|Name=TCONS_00059793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MEEIGISPSLNGTPTSRPTTTTNATTQTTDPNIDDLYIKYKKLQKQLEFL
AVQEEYIKDEQKNLKKEYLHAQEEVKRIQSVPLVIGQFLEAIDQNTGIVG
STTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDILPPEADSSIAML
AADEKPDVSYADIGGMDIQKQEMREAVELPLTHFELYKQIGIDPPRGVLM
YGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLA
KENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVN
VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITGKMNL
SDEVDLEDYVARPDKISGADINAIVQEAGMQAVRENRYVVLAKDFEKGYK
NNIKKDEQEHEFYK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0016787 | hydrolase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0030163 | protein catabolic process |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0030163 |
protein catabolic process |
| cellular_component |
GO:0005737 |
cytoplasm |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0016787 |
hydrolase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 61..81 |
| None | No IPR available | COILS | Coil | Coil | coord: 33..53 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 142..345
e-value: 1.3E-59
score: 201.1 |
| None | No IPR available | GENE3D | 1.10.8.60 | | coord: 346..414
e-value: 2.3E-18
score: 65.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..30 |
| None | No IPR available | CDD | cd00009 | AAA | coord: 164..331
e-value: 3.47334E-27
score: 104.535 |
| IPR003593 | AAA+ ATPase domain | SMART | SM00382 | AAA_5 | coord: 194..333
e-value: 4.3E-24
score: 96.0 |
| IPR003959 | ATPase, AAA-type, core | PFAM | PF00004 | AAA | coord: 198..331
e-value: 4.8E-44
score: 149.9 |
| IPR005937 | 26S proteasome subunit P45 | TIGRFAM | TIGR01242 | TIGR01242 | coord: 41..398
e-value: 1.5E-135
score: 450.0 |
| IPR003960 | ATPase, AAA-type, conserved site | PROSITE | PS00674 | AAA | coord: 301..319 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 156..403 |
Blast
BLAST of TCONS_00059793-protein vs. Swiss-Prot (Human)
Match: PRS6B (26S proteasome regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0 Identity = 363/419 (86.63%), Postives = 384/419 (91.65%), Query Frame = 0 Query: 1 MEEIGI-----SPSLNGTPTSRPTTTTNATTQTTDPNIDDLYIKYKKLQKQLEFLAVQEEYIKDEQKNLKKEYLHAQEEVKRIQSVPLVIGQFLEAIDQNTGIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDILPPEADSSIAMLAADEKPDVSYADIGGMDIQKQEMREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITGKMNLSDEVDLEDYVARPDKISGADINAIVQEAGMQAVRENRYVVLAKDFEKGYKNNIKKDEQEHEFYK 414
MEEIGI + SRP T + + +++DLY +YKKLQ++LEFL VQEEYIKDEQKNLKKE+LHAQEEVKRIQS+PLVIGQFLEA+DQNT IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVD+LPPEADSSI ML +D+KPDV YADIGGMDIQKQE+REAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTA+FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTIT KMNLS+EVDLEDYVARPDKISGADIN+I QE+GM AVRENRY+VLAKDFEK YK IKKDEQEHEFYK
Sbjct: 1 MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPE-DLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
The following BLAST results are available for this feature:
BLAST of TCONS_00059793-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| PRS6B | 0.000e+0 | 86.63 | 26S proteasome regulatory subunit 6B OS=Homo sapie... | [more] |
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