TCONS_00059837-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059837-protein
Unique Name	TCONS_00059837-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	970

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059837-protein ID=TCONS_00059837-protein|Name=TCONS_00059837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=970bp
MSSKPNKFVKGHNALKPKIAKPLTKSKELQKKKAEEAETAAVLNEYLADF
QTGAAGGKTFVRSGTVNPGKGEVPTMDSGKVYKPKSKMQQLAEEFRKSKE
ITNEYKLTKDLKKKAQDKKKSNLELFKEELQQSQKERDIRRKLRTGDLSG
ISEEVLNSLPPAFFNDKAGEDEFSYQYGEGGSRDTGDPSTTNLFVSNINP
LLNEEQMCKIFGRYGPLASVKIMWPRTDEEKSRNRNCGFVAFMTRKDGER
ALDDLEGKYVMDFEMKLGWGKNVPIPPQPIYVHPSQSHIVRPPKQSGLPF
NCQLPYKQRKESLPFDGNLEITVVKVVIPTERNIVSIINRMVEFVVREGP
MFEAMIMNREIANPMYRFLFDNKSNEHVYYRWRLFAMLQGDTTHKWNQKC
FRMYVGGSIWQPPSSNPYGSQVSSSGMTASAALATASTAIVHGNVKVNEE
PNPESLAAKKNMLLKHLLKEEKEETDAKQPPKEKKALSDRNRDKLEDFLR
TITTDRTKVGELMFWCIDHAECCEEIVECICESLSILETPIPLKIARLFL
VSDILSNSTAKVHNASAYRKVFQIELLEMMENMHKALATCSTKSQTEKFR
KQVLACLAAWQDWSLYPPGFLINLQNVFVGISTAQDIKDEEERVNKESLR
AKMSAIDGEPLKEEEDDEDDVDGIPLTKDVSEIDGLPLVKQEDDIDGVPI
KGKSEDPVALSRWERIEDSTEDEQTKENKSKWEKVEGVKMGKSVKEEEMD
SEEEPPRRRDRSPTRDKSDRRSRDNSPDEEDRQRLRDVELKVVRFIDKLE
QRGGNKSGLNIQKEAAKFREQLLQQYENAREKKRKSNKSSDRKRERSPSP
VPDSKRKKSSKRRSSLSPSPPRSRRRGRSRSRSRSFSPNRNRSYSRSPDR
FKDSPIFKTDRSRSRRSYSRSPDSRSRSPPMRRSRSPRRSRTPPRRSRSP
SYSPRRNSSSSKKKSKKSKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037637	XLOC_037637	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059837	TCONS_00059837	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000061	Surp
IPR006569	CID_dom
IPR013170	mRNA_splic_Cwf21_dom
IPR000504	RRM_dom
IPR008942	ENTH_VHS
IPR035009	SR140_RRM

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 819..843
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	GENE3D	3.30.70.330		coord: 23..278 e-value: 4.5E-19 score: 68.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 470..490
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 690..970
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 654..677
IPR000061	SWAP/Surp	SMART	SM00648	surpneu2	coord: 335..389 e-value: 3.1E-18 score: 76.6
IPR000061	SWAP/Surp	PFAM	PF01805	Surp	coord: 336..386 e-value: 1.2E-16 score: 60.3
IPR000061	SWAP/Surp	PROSITE	PS50128	SURP	coord: 337..380 score: 13.681
IPR000061	SWAP/Surp	SUPERFAMILY	109905	Surp module (SWAP domain)	coord: 321..392
IPR006569	CID domain	SMART	SM00582	558neu5	coord: 494..629 e-value: 7.8E-17 score: 71.9
IPR006569	CID domain	PROSITE	PS51391	CID	coord: 487..632 score: 34.035
IPR013170	mRNA splicing factor Cwf21 domain	SMART	SM01115	cwf21_2	coord: 777..827 e-value: 1.9E-8 score: 44.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 192..268 e-value: 1.1E-14 score: 64.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 193..265 e-value: 3.4E-11 score: 42.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 191..272 score: 14.453
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 185..279
IPR008942	ENTH/VHS	GENE3D	1.25.40.90		coord: 489..638 e-value: 8.1E-29 score: 99.9
IPR008942	ENTH/VHS	SUPERFAMILY	48464	ENTH/VHS domain	coord: 492..630
IPR035009	SR140, RNA recognition motif	CDD	cd12223	RRM_SR140	coord: 190..273 e-value: 1.24302E-49 score: 169.752

Blast

[Close]

BLAST of TCONS_00059837-protein vs. Swiss-Prot (Human)
Match: SR140 (U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens GN=U2SURP PE=1 SV=2)

HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0
Identity = 359/846 (42.43%), Postives = 493/846 (58.27%), Query Frame = 0

Query:   39 TAAVLNEYLADFQTGAAGGK--TFVRSGTVNPGKGEVPTMDS-GKVYKPKSKMQQLAEEFRKSKEITNEYK---LTKDLKK-----KAQDKKKSNLELFKEELQQSQKERDIRRKLRTGDLSGI------SEEVLNSL-PPAFFNDKAGE-DEFSYQYGEGGSRDTGDPSTTNLFVSNINPLLNEEQMCKIFGRYGPLASVKIMWPRTDEEKSRNRNCGFVAFMTRKDGERALDDLEGKYVMDFEMKLGWGKNVPIPPQPIYVHPSQSHIVRPPKQSGLPFNCQ------------LPYKQRKESLPFDGNLEITVVKVVIPTERNIVSIINRMVEFVVREGPMFEAMIMNREIANPMYRFLFDNKSNEHVYYRWRLFAMLQGDTTHKWNQKCFRMYVGGSIWQPPSSNPYGSQVSSSGMTASAALATASTAIVHGNVKVNEEPNPESLAAKKNMLLKHLLKEEKEETDAKQPPKEKKALSDRNRDKLEDFLRTITTDRTKVGELMFWCIDHAECCEEIVECICESLSILETPIPLKIARLFLVSDILSNSTAKVHNASAYRKVFQIELLEMMENMHKALATCSTKSQTEKFRKQVLACLAAWQDWSLYPPGFLINLQNVFVGISTAQDIKDEEERVNKESLRAKMSAIDGEPLKEEEDDE--DDVDGIPL-TKDVSEIDGLPLVKQEDDIDGVPIKG----KSEDP---VALSRWERIEDSTEDEQTKENKSKWEKVE------------------GVKMGKSVKEEEMDSEEEPPRRRDRSPTRDKSDRRSRDNSPDEEDRQRLRDVELKVVRFIDKLEQ-RGGNKSGLNIQKEAAKFREQLLQ 824
             A +  E+LA F+ G+ G K  TFVR G VN  K E  T +  GK+YKP S+    A++     + +NE     L  + KK       ++KKKSNLELFKEEL+Q Q+ERD R K + G LS        S+    S+  P+  N  +G  D+++      GS D GDPSTTNL++ NINP +NEE +C+ FGR+GPLASVKIMWPRTDEE++R RNCGFVAFM R+D ERAL +L GK +M FEMKLGWGK VPIPP PIY+ PS      PP  SGLPFN Q            LP  + KE   F+  L   +VKVVIPTERN++++I+RM+EFVVREGPMFEAMIMNREI NPM+RFLF+N++  HVYYRW+L+++LQGD+  KW  + FRM+  GS W+PP  NPY                      +HG                        + EE+E     + P +K AL +  RDKLE+ LR +T  +  +G+ M +C+++AE  EEIV+CI ESLSIL+TP+P KIARL+LVSD+L NS+AKV NAS YRK F+ +L ++  +++    T     Q+E F+++V+ C  AW+DW++YP  FLI LQN+F+G+    + K+ E+  +          +DG P++EE D    +DVDGIP+    + ++DG+P+   +DD+DGVP+      K  +P   VA S+WE + D +E E      SKWE  +                    +  +S K EE      P +         K    S      EE R +LR++ELKV++F D+LE  +   K G + Q++   +R++LLQ
Sbjct:  113 AAEIYEEFLAAFE-GSDGNKVKTFVRGGVVNAAKEEHETDEKRGKIYKPSSR---FADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTK-GRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYA-----PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKED--FEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPY----------------------LHG------------------------MSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDD---------LDGAPIEEELDGAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAV-DESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMS------EEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQ 884

The following BLAST results are available for this feature:

BLAST of TCONS_00059837-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059837-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SR140	0.000e+0	42.43	U2 snRNP-associated SURP motif-containing protein ...	[more]

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TCONS_00059837-protein (polypeptide) - C. hemisphaerica