TCONS_00059837-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059837-protein
Unique NameTCONS_00059837-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length970

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059837-protein ID=TCONS_00059837-protein|Name=TCONS_00059837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=970bp
MSSKPNKFVKGHNALKPKIAKPLTKSKELQKKKAEEAETAAVLNEYLADF
QTGAAGGKTFVRSGTVNPGKGEVPTMDSGKVYKPKSKMQQLAEEFRKSKE
ITNEYKLTKDLKKKAQDKKKSNLELFKEELQQSQKERDIRRKLRTGDLSG
ISEEVLNSLPPAFFNDKAGEDEFSYQYGEGGSRDTGDPSTTNLFVSNINP
LLNEEQMCKIFGRYGPLASVKIMWPRTDEEKSRNRNCGFVAFMTRKDGER
ALDDLEGKYVMDFEMKLGWGKNVPIPPQPIYVHPSQSHIVRPPKQSGLPF
NCQLPYKQRKESLPFDGNLEITVVKVVIPTERNIVSIINRMVEFVVREGP
MFEAMIMNREIANPMYRFLFDNKSNEHVYYRWRLFAMLQGDTTHKWNQKC
FRMYVGGSIWQPPSSNPYGSQVSSSGMTASAALATASTAIVHGNVKVNEE
PNPESLAAKKNMLLKHLLKEEKEETDAKQPPKEKKALSDRNRDKLEDFLR
TITTDRTKVGELMFWCIDHAECCEEIVECICESLSILETPIPLKIARLFL
VSDILSNSTAKVHNASAYRKVFQIELLEMMENMHKALATCSTKSQTEKFR
KQVLACLAAWQDWSLYPPGFLINLQNVFVGISTAQDIKDEEERVNKESLR
AKMSAIDGEPLKEEEDDEDDVDGIPLTKDVSEIDGLPLVKQEDDIDGVPI
KGKSEDPVALSRWERIEDSTEDEQTKENKSKWEKVEGVKMGKSVKEEEMD
SEEEPPRRRDRSPTRDKSDRRSRDNSPDEEDRQRLRDVELKVVRFIDKLE
QRGGNKSGLNIQKEAAKFREQLLQQYENAREKKRKSNKSSDRKRERSPSP
VPDSKRKKSSKRRSSLSPSPPRSRRRGRSRSRSRSFSPNRNRSYSRSPDR
FKDSPIFKTDRSRSRRSYSRSPDSRSRSPPMRRSRSPRRSRTPPRRSRSP
SYSPRRNSSSSKKKSKKSKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037637XLOC_037637Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059837TCONS_00059837Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000061Surp
IPR006569CID_dom
IPR013170mRNA_splic_Cwf21_dom
IPR000504RRM_dom
IPR008942ENTH_VHS
IPR035009SR140_RRM
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
100200300400500600700800900Expect = 4.5E-19 / Score = 68.2Score = Score = Score = 34.035Score = Score = SequenceCoilCoilG3DSA:3.30.70.330mobidb-litemobidb-litemobidb-litemobidb-litemobidb-liteSM00648PF01805PS50128SSF109905SM00582PS51391SM01115SM00360PF00076PS50102SSF54928G3DSA:1.25.40.90SSF48464cd12223
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 819..843
NoneNo IPR availableCOILSCoilCoilcoord: 116..136
NoneNo IPR availableGENE3D3.30.70.330coord: 23..278
e-value: 4.5E-19
score: 68.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..490
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 690..970
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 654..677
IPR000061SWAP/SurpSMARTSM00648surpneu2coord: 335..389
e-value: 3.1E-18
score: 76.6
IPR000061SWAP/SurpPFAMPF01805Surpcoord: 336..386
e-value: 1.2E-16
score: 60.3
IPR000061SWAP/SurpPROSITEPS50128SURPcoord: 337..380
score: 13.681
IPR000061SWAP/SurpSUPERFAMILY109905Surp module (SWAP domain)coord: 321..392
IPR006569CID domainSMARTSM00582558neu5coord: 494..629
e-value: 7.8E-17
score: 71.9
IPR006569CID domainPROSITEPS51391CIDcoord: 487..632
score: 34.035
IPR013170mRNA splicing factor Cwf21 domainSMARTSM01115cwf21_2coord: 777..827
e-value: 1.9E-8
score: 44.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 192..268
e-value: 1.1E-14
score: 64.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 193..265
e-value: 3.4E-11
score: 42.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 191..272
score: 14.453
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 185..279
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 489..638
e-value: 8.1E-29
score: 99.9
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 492..630
IPR035009SR140, RNA recognition motifCDDcd12223RRM_SR140coord: 190..273
e-value: 1.24302E-49
score: 169.752

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059837-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MSSKPNKFVKGHNALKPKIAKPLTKSKELQKKKAEEAETAAVLNEYLADFQTGAAGGKTFVRSGTVNPGKGEVPTMDSGKVYKPKSKMQQLAEEFRKSKEITNEYKLTKDLKKKAQDKKKSNLELFKEELQQSQKERDIRRKLRTGDLSGISEEVLNSLPPAFFNDKAGEDEFSYQYGEGGSRDTGDPSTTNLFVSNINPLLNEEQMCKIFGRYGPLASVKIMWPRTDEEKSRNRNCGFVAFMTRKDGERALDDLEGKYVMDFEMKLGWGKNVPIPPQPIYVHPSQSHIVRPPKQSGLPFNCQLPYKQRKESLPFDGNLEITVVKVVIPTERNIVSIINRMVEFVVREGPMFEAMIMNREIANPMYRFLFDNKSNEHVYYRWRLFAMLQGDTTHKWNQKCFRMYVGGSIWQPPSSNPYGSQVSSSGMTASAALATASTAIVHGNVKVNEEPNPESLAAKKNMLLKHLLKEEKEETDAKQPPKEKKALSDRNRDKLEDFLRTITTDRTKVGELMFWCIDHAECCEEIVECICESLSILETPIPLKIARLFLVSDILSNSTAKVHNASAYRKVFQIELLEMMENMHKALATCSTKSQTEKFRKQVLACLAAWQDWSLYPPGFLINLQNVFVGISTAQDIKDEEERVNKESLRAKMSAIDGEPLKEEEDDEDDVDGIPLTKDVSEIDGLPLVKQEDDIDGVPIKGKSEDPVALSRWERIEDSTEDEQTKENKSKWEKVEGVKMGKSVKEEEMDSEEEPPRRRDRSPTRDKSDRRSRDNSPDEEDRQRLRDVELKVVRFIDKLEQRGGNKSGLNIQKEAAKFREQLLQQYENAREKKRKSNKSSDRKRERSPSPVPDSKRKKSSKRRSSLSPSPPRSRRRGRSRSRSRSFSPNRNRSYSRSPDRFKDSPIFKTDRSRSRRSYSRSPDSRSRSPPMRRSRSPRRSRTPPRRSRSPSYSPRRNSSSSKKKSKKSKR100200300400500600700800900Expect = 0.00e+0 / Id = 42.43SequenceSR140
Match NameE-valueIdentityDescription
SR1400.000e+042.43U2 snRNP-associated SURP motif-containing protein ... [more]
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