Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00059851-protein ID=TCONS_00059851-protein|Name=TCONS_00059851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=874bp MDSASDDEFFDAEEELSPKKVVKALSTEQEITSNVTPIDVVDGEAPQRTS KTKINKDIITKTENIDITQEDMIIKDAEITRLQEFSNSSSSDSLSTVASI KDELKNTESVDEVESQDIKDINEPEKLVVELPPTDILEEDLVTPTPSNPS VNKLPEIIETPPDSSTSINIEKPQPKRPSPPKLPPQPTLSKPEIRIEDQD EKCETEKDDKSQTVSPNQPVAPPRKRRQKKGDTEGKDKPSRPPPPRPPPP AKVVTLTDAPSVPFIKVSTSTTEMNKILVSGNSLEVVYNDDQMARRSGGI LSPPPKSESPTSTTKSSAPLTDAEILEQVIIKNLDTGEAIPLSLAEDRLP KCTNPLALHIFRLATEEDDEENEEVDAGGYDDGHLSDTSTTSSIKAGEGK RKRLKKFLGKTVEKIKLVADEVTRQGRPNESSSEDEDQHDDQHEGAIKFK NHRAIKDRLMFRKIKLLQDLSGEHIGAVWTMKFSLCGKLLATAGQDNIVR VWVLKESAAHFQEMKMKYSKPTGRSSPTGSMTSHTSTASADDDPVIEDLM MAHADDDSNNSGPFKRTPFVSYHGHTSDVLDLSWSKNYFLLSSSMDKTVR LWHISRNECLCCFQHVDFVTAICFHPRDDRYFLSGSLDGKIRLWNIPEKK VALWNEIDGSGTSLITAANFCQDGKLAVVGTYDGRCIFYDTERLKYHTQV TVRSSRGKNARGRKISGIEPMPNEDKVLITSNDSRIRLYDLKDHSLYCKY KGLQNESSQIRASFSNDGKLILCGSEDKFVHIWRTNHDVPNARKDRNEYY ESFSAHDAVVTAAIFAPFPNVIMEQSTNNDDSPATPLACAPPSEKTPAKE PSNKRFEVLVAADWQGGVKFFINR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515
protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
100 200 300 400 500 600 700 800 Score = 31.03 Score = 39.69 Score = 36.8 Expect = 8.5E-5 / Score = 31.9 Expect = 1.7E-7 / Score = 40.9 Expect = 2.7E-9 / Score = 46.9 Expect = 3.6 / Score = 13.5 Expect = 18.0 / Score = 9.1 Expect = 0.6 / Score = 18.4 Expect = 0.019 / Score = 15.7 Expect = 1.9E-5 / Score = 25.3 Expect = 2.6E-4 / Score = 21.6 Expect = 0.026 / Score = 15.3 Score = 11.277 Score = 10.241 Score = 12.58 Expect = 7.0E-57 / Score = 192.3 Expect = 8.2E-5 / Score = 20.9 Score = Score = Score = Score = Score = Score = Score = 20.276 Score = 9.81 Score = Score = Sequence PR00320 SM00320 PF00400 PS50082 PS50082 PS50082 G3DSA:2.130.10.10 mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PS50294 PS50294 SSF50978
IPR Term IPR Description Source Source Term Source Description Alignment
IPR020472 G-protein beta WD-40 repeat PRINTS PR00320 GPROTEINBRPT coord: 490..504 score: 31.03 coord: 590..604 score: 39.69 coord: 632..646 score: 36.8
IPR001680 WD40 repeat SMART SM00320 WD40_4 coord: 647..690 e-value: 3.6 score: 13.5 coord: 743..784 e-value: 0.6 score: 18.4 coord: 463..503 e-value: 8.5E-5 score: 31.9 coord: 698..740 e-value: 18.0 score: 9.1 coord: 606..645 e-value: 2.7E-9 score: 46.9 coord: 565..603 e-value: 1.7E-7 score: 40.9
IPR001680 WD40 repeat PFAM PF00400 WD40 coord: 763..783 e-value: 0.026 score: 15.3 coord: 469..502 e-value: 0.019 score: 15.7 coord: 608..645 e-value: 2.6E-4 score: 21.6 coord: 569..602 e-value: 1.9E-5 score: 25.3
IPR001680 WD40 repeat PROSITE PS50082 WD_REPEATS_2 coord: 612..646 score: 11.277
IPR001680 WD40 repeat PROSITE PS50082 WD_REPEATS_2 coord: 471..502 score: 10.241
IPR001680 WD40 repeat PROSITE PS50082 WD_REPEATS_2 coord: 572..612 score: 12.58
IPR015943 WD40/YVTN repeat-like-containing domain GENE3D 2.130.10.10 coord: 190..776 e-value: 7.0E-57 score: 192.3 coord: 777..871 e-value: 8.2E-5 score: 20.9
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 826..852
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 365..397
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 419..449
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 295..320
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 103..260
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 518..540
IPR017986 WD40-repeat-containing domain PROSITE PS50294 WD_REPEATS_REGION coord: 572..793 score: 20.276
IPR017986 WD40-repeat-containing domain PROSITE PS50294 WD_REPEATS_REGION coord: 471..512 score: 9.81
IPR017986 WD40-repeat-containing domain SUPERFAMILY 50978 WD40 repeat-like coord: 566..823 coord: 473..506
Blast
BLAST of TCONS_00059851-protein vs. Swiss-Prot (Human)
Match:
WDR44 (WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1)
HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 319/590 (54.07%), Postives = 399/590 (67.63%), Query Frame = 0
Query: 314 TKSSAPLTDAEILEQVIIKNLDTGEAIPLSLAEDRLPKCTNPLALHIFRL--------ATEEDDEENEEVDAGGYDDGHLSDTSTTSSIKAGEGKRKRLKKFLGKTVEKIKLVADEVTRQGRPNESSSEDEDQH-------DDQHEGA-----IKFKNHRAIKDRLMFRKIKLLQDLSGEHIGAVWTMKFSLCGKLLATAGQDNIVRVWVLKESAAHFQEMKMKYSKPTGRSSPTGSMTSHTSTASADDDPVIEDLMMAHADDDSNNSGPFKRTPFVSYHGHTSDVLDLSWSKNYFLLSSSMDKTVRLWHISRNECLCCFQHVDFVTAICFHPRDDRYFLSGSLDGKIRLWNIPEKKVALWNEIDGSGTSLITAANFCQDGKLAVVGTYDGRCIFYDTERLKYHTQVTVRSSRGKNARGRKISGIEPMPNEDKVLITSNDSRIRLYDLKDHSLYCKYKGLQNESSQIRASFSNDGKLILCGSEDKFVHIWRTNHDVP---NARKDRNEYYESFSAHDAVVTAAIFAPFPNVIM------EQSTNNDDSPATPLACAPPSEKTPAKEPSNKRFEVLVAADWQGGVKFFINR 874
+ S LTD EIL V+IKNLDTGE IPLSLAE++LP NPL LHI R A + DDEE + D G L +T +LKKFLGK+V++ K +A+E + S DE H EG +KFK K F +IK++QDLSGEH+GAVWTMKFS CG+LLA+AGQDN+VR+W LK + +F M+MKY+ GR SP+ S S +S+ S D V +D + + PF++ PF Y GHT+D+LDLSWSKNYFLLSSSMDKTVRLWHISR ECLCCFQH+DFVTAI FHPRDDRYFLSGSLDGK+RLWNIP+KKVALWNE+DG T LITAANFCQ+GK AV+GTYDGRCIFYDTE LKYHTQ+ VRS+RG+N GRKI+GIEP+P E+K+L+TSNDSRIRLYDL+D SL KYKG N SSQI+ASFS+D ++ GSEDK+V+IW T HD+ + R+DRN+++E AH+AVVT+AIFAP P++++ E+S N+ S + A TP+ EVL++AD+ G +K F+N+
Sbjct: 342 SNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQPTDTDGGRLKQKTT------------QLKKFLGKSVKRAKHLAEEYGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTE-GRVSPSPSQESLSSSKSDTDTGVCS----GTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQ-TKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKSEGNEKSEDAEVLDA-----TPSGIMKTDNTEVLLSADFTGAIKVFVNK 908
The following BLAST results are available for this feature:
BLAST of TCONS_00059851-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M D S A S D D E F F D A E E E L S P K K V V K A L S T E Q E I T S N V T P I D V V D G E A P Q R T S K T K I N K D I I T K T E N I D I T Q E D M I I K D A E I T R L Q E F S N S S S S D S L S T V A S I K D E L K N T E S V D E V E S Q D I K D I N E P E K L V V E L P P T D I L E E D L V T P T P S N P S V N K L P E I I E T P P D S S T S I N I E K P Q P K R P S P P K L P P Q P T L S K P E I R I E D Q D E K C E T E K D D K S Q T V S P N Q P V A P P R K R R Q K K G D T E G K D K P S R P P P P R P P P P A K V V T L T D A P S V P F I K V S T S T T E M N K I L V S G N S L E V V Y N D D Q M A R R S G G I L S P P P K S E S P T S T T K S S A P L T D A E I L E Q V I I K N L D T G E A I P L S L A E D R L P K C T N P L A L H I F R L A T E E D D E E N E E V D A G G Y D D G H L S D T S T T S S I K A G E G K R K R L K K F L G K T V E K I K L V A D E V T R Q G R P N E S S S E D E D Q H D D Q H E G A I K F K N H R A I K D R L M F R K I K L L Q D L S G E H I G A V W T M K F S L C G K L L A T A G Q D N I V R V W V L K E S A A H F Q E M K M K Y S K P T G R S S P T G S M T S H T S T A S A D D D P V I E D L M M A H A D D D S N N S G P F K R T P F V S Y H G H T S D V L D L S W S K N Y F L L S S S M D K T V R L W H I S R N E C L C C F Q H V D F V T A I C F H P R D D R Y F L S G S L D G K I R L W N I P E K K V A L W N E I D G S G T S L I T A A N F C Q D G K L A V V G T Y D G R C I F Y D T E R L K Y H T Q V T V R S S R G K N A R G R K I S G I E P M P N E D K V L I T S N D S R I R L Y D L K D H S L Y C K Y K G L Q N E S S Q I R A S F S N D G K L I L C G S E D K F V H I W R T N H D V P N A R K D R N E Y Y E S F S A H D A V V T A A I F A P F P N V I M E Q S T N N D D S P A T P L A C A P P S E K T P A K E P S N K R F E V L V A A D W Q G G V K F F I N R 100 200 300 400 500 600 700 800 Expect = 0.00e+0 / Id = 54.07 Sequence WDR44
Match Name E-value Identity Description
WDR44 0.000e+0 54.07 WD repeat-containing protein 44 OS=Homo sapiens GN... [more]
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