TCONS_00059851-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059851-protein
Unique NameTCONS_00059851-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059851-protein ID=TCONS_00059851-protein|Name=TCONS_00059851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=874bp
MDSASDDEFFDAEEELSPKKVVKALSTEQEITSNVTPIDVVDGEAPQRTS
KTKINKDIITKTENIDITQEDMIIKDAEITRLQEFSNSSSSDSLSTVASI
KDELKNTESVDEVESQDIKDINEPEKLVVELPPTDILEEDLVTPTPSNPS
VNKLPEIIETPPDSSTSINIEKPQPKRPSPPKLPPQPTLSKPEIRIEDQD
EKCETEKDDKSQTVSPNQPVAPPRKRRQKKGDTEGKDKPSRPPPPRPPPP
AKVVTLTDAPSVPFIKVSTSTTEMNKILVSGNSLEVVYNDDQMARRSGGI
LSPPPKSESPTSTTKSSAPLTDAEILEQVIIKNLDTGEAIPLSLAEDRLP
KCTNPLALHIFRLATEEDDEENEEVDAGGYDDGHLSDTSTTSSIKAGEGK
RKRLKKFLGKTVEKIKLVADEVTRQGRPNESSSEDEDQHDDQHEGAIKFK
NHRAIKDRLMFRKIKLLQDLSGEHIGAVWTMKFSLCGKLLATAGQDNIVR
VWVLKESAAHFQEMKMKYSKPTGRSSPTGSMTSHTSTASADDDPVIEDLM
MAHADDDSNNSGPFKRTPFVSYHGHTSDVLDLSWSKNYFLLSSSMDKTVR
LWHISRNECLCCFQHVDFVTAICFHPRDDRYFLSGSLDGKIRLWNIPEKK
VALWNEIDGSGTSLITAANFCQDGKLAVVGTYDGRCIFYDTERLKYHTQV
TVRSSRGKNARGRKISGIEPMPNEDKVLITSNDSRIRLYDLKDHSLYCKY
KGLQNESSQIRASFSNDGKLILCGSEDKFVHIWRTNHDVPNARKDRNEYY
ESFSAHDAVVTAAIFAPFPNVIMEQSTNNDDSPATPLACAPPSEKTPAKE
PSNKRFEVLVAADWQGGVKFFINR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037645XLOC_037645Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059851TCONS_00059851Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 490..504
score: 31.03
coord: 590..604
score: 39.69
coord: 632..646
score: 36.8
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 647..690
e-value: 3.6
score: 13.5
coord: 743..784
e-value: 0.6
score: 18.4
coord: 463..503
e-value: 8.5E-5
score: 31.9
coord: 698..740
e-value: 18.0
score: 9.1
coord: 606..645
e-value: 2.7E-9
score: 46.9
coord: 565..603
e-value: 1.7E-7
score: 40.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 763..783
e-value: 0.026
score: 15.3
coord: 469..502
e-value: 0.019
score: 15.7
coord: 608..645
e-value: 2.6E-4
score: 21.6
coord: 569..602
e-value: 1.9E-5
score: 25.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 612..646
score: 11.277
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 471..502
score: 10.241
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 572..612
score: 12.58
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 190..776
e-value: 7.0E-57
score: 192.3
coord: 777..871
e-value: 8.2E-5
score: 20.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 826..852
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 419..449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 518..540
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 572..793
score: 20.276
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 471..512
score: 9.81
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 566..823
coord: 473..506

Blast
[Close]
BLAST of TCONS_00059851-protein vs. Swiss-Prot (Human)
Match: WDR44 (WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1)

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 319/590 (54.07%), Postives = 399/590 (67.63%), Query Frame = 0 
Query:  314 TKSSAPLTDAEILEQVIIKNLDTGEAIPLSLAEDRLPKCTNPLALHIFRL--------ATEEDDEENEEVDAGGYDDGHLSDTSTTSSIKAGEGKRKRLKKFLGKTVEKIKLVADEVTRQGRPNESSSEDEDQH-------DDQHEGA-----IKFKNHRAIKDRLMFRKIKLLQDLSGEHIGAVWTMKFSLCGKLLATAGQDNIVRVWVLKESAAHFQEMKMKYSKPTGRSSPTGSMTSHTSTASADDDPVIEDLMMAHADDDSNNSGPFKRTPFVSYHGHTSDVLDLSWSKNYFLLSSSMDKTVRLWHISRNECLCCFQHVDFVTAICFHPRDDRYFLSGSLDGKIRLWNIPEKKVALWNEIDGSGTSLITAANFCQDGKLAVVGTYDGRCIFYDTERLKYHTQVTVRSSRGKNARGRKISGIEPMPNEDKVLITSNDSRIRLYDLKDHSLYCKYKGLQNESSQIRASFSNDGKLILCGSEDKFVHIWRTNHDVP---NARKDRNEYYESFSAHDAVVTAAIFAPFPNVIM------EQSTNNDDSPATPLACAPPSEKTPAKEPSNKRFEVLVAADWQGGVKFFINR 874
            + S   LTD EIL  V+IKNLDTGE IPLSLAE++LP   NPL LHI R         A + DDEE  +      D G L   +T            +LKKFLGK+V++ K +A+E   +      S  DE  H           EG      +KFK     K    F +IK++QDLSGEH+GAVWTMKFS CG+LLA+AGQDN+VR+W LK +  +F  M+MKY+   GR SP+ S  S +S+ S  D  V         +D  + + PF++ PF  Y GHT+D+LDLSWSKNYFLLSSSMDKTVRLWHISR ECLCCFQH+DFVTAI FHPRDDRYFLSGSLDGK+RLWNIP+KKVALWNE+DG  T LITAANFCQ+GK AV+GTYDGRCIFYDTE LKYHTQ+ VRS+RG+N  GRKI+GIEP+P E+K+L+TSNDSRIRLYDL+D SL  KYKG  N SSQI+ASFS+D   ++ GSEDK+V+IW T HD+    + R+DRN+++E   AH+AVVT+AIFAP P++++      E+S  N+ S    +  A     TP+        EVL++AD+ G +K F+N+
Sbjct:  342 SNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQPTDTDGGRLKQKTT------------QLKKFLGKSVKRAKHLAEEYGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTE-GRVSPSPSQESLSSSKSDTDTGVCS----GTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQ-TKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKSEGNEKSEDAEVLDA-----TPSGIMKTDNTEVLLSADFTGAIKVFVNK 908
The following BLAST results are available for this feature:
BLAST of TCONS_00059851-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR440.000e+054.07WD repeat-containing protein 44 OS=Homo sapiens GN... [more]
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