TCONS_00059921-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059921-protein
Unique NameTCONS_00059921-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059921-protein ID=TCONS_00059921-protein|Name=TCONS_00059921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
MSNKLNILNKIIDCKYEKGQPYYLVKWKPSWEPADKLEPLFQDYIEDFWE
RINICKDAKDGILRPPRKRKRIEDHSTIAPTINGTDFTQPTQNNNTSQNN
FTNNFGHHVSGQPMMQTPNQPQHINQHHHQQAQQNQPQPQPQLQHSMNQL
MGFTDQQNMAAGVASNLFQTGLPSPGGAGEKKTRGRGRGRGSKGRGGQGR
GGMSNNIQQQQPQQQMMQNDMQNYGGGMGVSPFGMMSPAQSPGAFNFDTK
PVISQQQQQQHQSLQDIKPTIGPGGVIVDPYQQHQQISQPQPIMPGGMTF
GDSPRGKGRGGGGRGRGRSSSTGGVTPIKEEFKGEPVAGEELRTINKTTS
GVPNLLSGDGQYDNWSNPYAKLALVCRMCTKEQNPKSKATWKQHWESHTD
LKNFGCYSCEKRFRMKGDLKTHIVRVHKEDFIDERVIRYNETAPIPQVDP
SEIIDGWSNPYVRNVFRCLQCNKELQWKNRASWKIHYESHLDIKRFGCYV
CQKPFRLKGDLKTHITRVHKIEFDDLQVIKLDQN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037679XLOC_037679Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059921TCONS_00059921Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 4..53
e-value: 7.5E-5
score: 32.1
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 374..398
e-value: 120.0
score: 3.8
coord: 466..490
e-value: 61.0
score: 6.3
coord: 404..427
e-value: 3.9
score: 16.5
coord: 496..519
e-value: 1.2
score: 18.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 406..427
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 498..519
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 404..432
score: 9.764
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 496..524
score: 9.452
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 465..515
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 390..425
NoneNo IPR availableGENE3D2.40.50.40coord: 5..136
e-value: 8.6E-8
score: 31.4
NoneNo IPR availableGENE3D3.30.160.60coord: 466..525
e-value: 1.0E-8
score: 34.9
NoneNo IPR availableGENE3D3.30.160.60coord: 402..443
e-value: 7.8E-6
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..143
NoneNo IPR availableCDDcd00024CHROMOcoord: 10..51
e-value: 1.55487E-5
score: 41.8659
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 367..401
e-value: 0.036
score: 13.6
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 8..54

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059921-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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