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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059921-protein ID=TCONS_00059921-protein|Name=TCONS_00059921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
MSNKLNILNKIIDCKYEKGQPYYLVKWKPSWEPADKLEPLFQDYIEDFWE
RINICKDAKDGILRPPRKRKRIEDHSTIAPTINGTDFTQPTQNNNTSQNN
FTNNFGHHVSGQPMMQTPNQPQHINQHHHQQAQQNQPQPQPQLQHSMNQL
MGFTDQQNMAAGVASNLFQTGLPSPGGAGEKKTRGRGRGRGSKGRGGQGR
GGMSNNIQQQQPQQQMMQNDMQNYGGGMGVSPFGMMSPAQSPGAFNFDTK
PVISQQQQQQHQSLQDIKPTIGPGGVIVDPYQQHQQISQPQPIMPGGMTF
GDSPRGKGRGGGGRGRGRSSSTGGVTPIKEEFKGEPVAGEELRTINKTTS
GVPNLLSGDGQYDNWSNPYAKLALVCRMCTKEQNPKSKATWKQHWESHTD
LKNFGCYSCEKRFRMKGDLKTHIVRVHKEDFIDERVIRYNETAPIPQVDP
SEIIDGWSNPYVRNVFRCLQCNKELQWKNRASWKIHYESHLDIKRFGCYV
CQKPFRLKGDLKTHITRVHKIEFDDLQVIKLDQN Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000953 | Chromo/chromo shadow domain | SMART | SM00298 | chromo_7 | coord: 4..53
e-value: 7.5E-5
score: 32.1 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 374..398
e-value: 120.0
score: 3.8
coord: 466..490
e-value: 61.0
score: 6.3
coord: 404..427
e-value: 3.9
score: 16.5
coord: 496..519
e-value: 1.2
score: 18.1 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 406..427 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 498..519 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 404..432
score: 9.764 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 496..524
score: 9.452 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 465..515 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 390..425 |
| None | No IPR available | GENE3D | 2.40.50.40 | | coord: 5..136
e-value: 8.6E-8
score: 31.4 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 466..525
e-value: 1.0E-8
score: 34.9 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 402..443
e-value: 7.8E-6
score: 25.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 167..214 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 299..329 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 80..143 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 10..51
e-value: 1.55487E-5
score: 41.8659 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 367..401
e-value: 0.036
score: 13.6 |
| IPR016197 | Chromo domain-like | SUPERFAMILY | 54160 | Chromo domain-like | coord: 8..54 |
Blast
The following BLAST results are available for this feature:
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