TCONS_00060111-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060111-protein
Unique NameTCONS_00060111-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060111-protein ID=TCONS_00060111-protein|Name=TCONS_00060111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MSEGKQSQFRREEEEIAKGARAMEDPERCSICLQPKAPNSPSNKCDQCLD
KMNKVPTGFAFKAVEGQGDKEFECPICLCLIKGATELTCEHLMCGECLLH
YEKGQTEKAEKEVAKKNPKFLCSVCMTPYKVQDKKSVKSTDRFIQNKIRV
HCMQKDCPWIGSIKDYEVHVKKCDYGKIKCPYFELGCLNTFEEQNLPKHN
AMNRQIHEALLLNVVNLLAKERLENRTLLENQNKTIERFEERLGKIEVEN
KDLVDKYETQSNLLIKNTKEIGIRCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037820XLOC_037820Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060111TCONS_00060111Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 229..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 67..139
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 74..125
e-value: 0.0034
score: 26.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 74..125
score: 8.609
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 66..138
e-value: 9.9E-9
score: 34.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 142..199
e-value: 1.7E-12
score: 46.8
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 74..125
e-value: 4.5E-5
score: 23.1
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 148..199
e-value: 7.8E-7
score: 29.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 89..98
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 148..216

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060111-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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