TCONS_00062325-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062325-protein
Unique NameTCONS_00062325-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2173

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062325-protein ID=TCONS_00062325-protein|Name=TCONS_00062325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2173bp
GSERELATFLNKKFSGMIAGIEMLDKEDLDLHNHLTGLKKTYVKLSFHNV
KELLKIKGQLMPIVRKNKEREKANATVALVTGESSKAPSSSKSDQMDNIL
DIREYDVPYYVRVSIDTKISVGHWYTVKVRGITHVEITERTDLLHRPDPV
VMAFDIETTKLPLKFPDSAIDSIMMISYMIDGQGYLITNREIISEDIEDF
EYTPRPEYEGPIIVFNEPDEAALLRRWFDHITETKPMIYVTYNGDFFDWP
FIDARAKIHGIDMKDETGFAPDAQKEYKSSYGIHMDAFRWVQRDSYLPVG
SQNLKAVTKAKLRYNPVEVDPEEMVRMASEEPTEMANYSVSDAVATYYLY
MQYVHPFIFALCTIIPMDPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQ
EQIHTKFFEGHLLDTETYVGGHVEALESGVFRSDIASRFRMVPEAFQGLI
DNIHDTIKTTVENEEGVPIEFVTNMDEVCEDVVKQLEELRDTPNRLEKPM
IYHLDVAAMYPNIILTNRLQPPAQVNEVTCAACDFNKPGAKCQRKLTWMW
RGDYSPANYSEYQNIRSQLEVEKMPGRFPGDPPRNFHQLWPAEQSLQEKK
RLADYSHKAYKKTKITKSELRSTVICQRENSFYIDTVRAFRDRRYEYKGL
LKVWKKKVSAAVDKGDPAEVKHAKGMEVLYDSLQLAHKCILNSFYGYVMR
KGSRWFSMEMAGIVCYTGANIITQARELVEQIGRPLELDTDGIWCILPAS
FPENFLVKTTHPKKPKITISYPGAMLNYIVQTNFTNDQYHNLKNAEKLDY
EIRKENSIFFEVDGPYKAMILPAAKEEGKKLKKRYAVFNEDGSLAELKGF
EVKRRGELQLIKIFQSSVFEAFLQGTSLETCYAAVAKIADYWLDVLYTKG
ENLPDSELFELISENRSMSKALEEYGSQKSTSISTAKRLAEFLGDQMVKD
KGLACRFVISRRPEGAPVTERAIPLAIFQTEESIKKHYLKKWLKVPANFD
FDIRNILDWNYYIERLNSCIQKIVTIPAALQGVSNPVPRCQHPDWLRKRL
LEKNDSFQQQRITDMFTKLKKKKAAEPPKNADPDVQVIEESNDIADIEEI
GGASAGKRAHTTPPAPTVTKKRKVDKHVENTEFVESDLLKSWKEVLGNPP
SMGTTKDEQEAWVTFHKRKWTLQRLQRAAARESRRQLRKEGVNVEHHRRA
LPQSGLDNFFQKQARTILESTWEIIQVSESAVPGVFNVFSMINNDLHNIK
VNIPRIFYVNSKKLKEGHGATWRKVNKILPRSYPSMHLYQYAVPEAIFRE
HSSELVADLSSPDVEGIYETQVPLDVRAVIKLGCVCRVHRNVARALNGRD
VDNFNLDQLEFKTLAGNTYLETDKLKHIYFYHGQLDNRAIYALFMPASQK
VSVFVLNTVKSNQMPNLSNLYKNERSNRILEMEEMGRAYTPPDVSSYSFD
VRVETDTRLLYRDIQRALSAYRDEKRGPTLVMLQTQSDQAHWKANIPELD
NFPLVEMPSVEIDTDQLNALDWQRQFAKKFIQAYLGVNDWLQAQLDQARY
FHIPVGNIPPNDPFLYASDIFFARHLSRSNHVLWISPTDRPDLGGKEEDN
FRLVTEFDEGGSPEINQPGCYSTVCVEISIDSLAVNTVLQSHHVHDAEGV
ASSLDTIQQASLEEMLNSRSGAAATLTSYDEAASCAQSFKVLKGLIISWI
QEVFANRNDFADTQLIHFYRYLRSPEAMLYDPALCKYIHGLMKKFFMQLI
AEFKTLGSTIVYANFNKIILNSKKRRVKDALAYVQYILTSIRSKPLFKNI
ALEPRSCWEYLMWMDPANHGGIRAKEIPENFMSNVDDEEKEENGNEFDSD
DDEDIRDLVAHAKEQKVEMNWNLEKFLPTSAACQTFFKVCIADHIHSVYV
HIVEQLQTHKGGSTPVKRRGLSTQQEMMAETTTTPSTVEFAQSRIQDVLT
EQLFGITQKIHKTLSGGRGKDAGLEFPVLAGSHLPLKNPSLEFIKAVCQV
LQLDVNIRNQVNKLRRDLLKLVGIGQFADEANFQDPCLSFIVPEMICEYC
NSCRDLDLCRDPLITPAKGNQPASVRCDNPDCQQQYNMSLVEEQLVLMLS
RRAMSYTLQDLKCLKCKMVKDKNMSKFCECAGRFGNLTSPDDFKKQLKIF
GNIAKHYQMSHLQETLDFMNSSP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039063XLOC_039063Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062325TCONS_00062325Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006172DNA-dir_DNA_pol_B
IPR013697DNA_pol_e_suA_C
IPR023211DNA_pol_palm_dom
IPR006133DNA-dir_DNA_pol_B_exonuc
IPR012337RNaseH-like_dom
IPR006134DNA-dir_DNA_pol_B_multi_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003887DNA-directed DNA polymerase activity
GO:0008270zinc ion binding
GO:00084083'-5' exonuclease activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006172DNA-directed DNA polymerase, family BSMARTSM00486polmehr3coord: 147..749
e-value: 1.0E-86
score: 304.0
IPR013697DNA polymerase epsilon, catalytic subunit A, C-terminalSMARTSM01159DUF1744_2coord: 1416..1822
e-value: 7.1E-198
score: 673.3
IPR013697DNA polymerase epsilon, catalytic subunit A, C-terminalPFAMPF08490DUF1744coord: 1418..1822
e-value: 5.4E-142
score: 473.0
IPR023211DNA polymerase, palm domainGENE3D3.90.1600.10coord: 491..852
e-value: 6.0E-66
score: 221.9
IPR023211DNA polymerase, palm domainGENE3D3.90.1600.10coord: 1465..1836
e-value: 1.2E-10
score: 40.7
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainPFAMPF03104DNA_pol_B_exo1coord: 4..307
e-value: 3.0E-77
score: 260.0
NoneNo IPR availableGENE3D3.30.342.10coord: 1..135
e-value: 1.2E-16
score: 60.5
NoneNo IPR availableCDDcd05535POLBc_epsiloncoord: 410..1032
e-value: 0.0
score: 1227.92
NoneNo IPR availableCDDcd05779DNA_polB_epsilon_exocoord: 148..351
e-value: 1.86907E-143
score: 443.625
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 624..753
coord: 501..544
coord: 794..1024
coord: 376..434
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 136..353
e-value: 5.9E-41
score: 139.5
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 101..397
coord: 16..65
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 586..943
e-value: 5.4E-15
score: 54.9

Blast
BLAST of TCONS_00062325-protein vs. Swiss-Prot (Human)
Match: DPOE1 (DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5)

HSP 1 Score: 2607.4 bits (6757), Expect = 0.000e+0
Identity = 1265/2199 (57.53%), Postives = 1629/2199 (74.08%), Query Frame = 0
Query:    1 GSERELATFLNKKFSGMIAGIEMLDKEDLDLHNHLTGLKKTYVKLSFHNVKELLKIKGQLMPIVRKNKEREKA-NATVALVT------GESSKAPSSSK--SDQMDNILDIREYDVPYYVRVSIDTKISVGHWYTVKVRGITH-VEITERTDLLHRPDPVVMAFDIETTKLPLKFPDSAIDSIMMISYMIDGQGYLITNREIISEDIEDFEYTPRPEYEGPIIVFNEPDEAALLRRWFDHITETKPMIYVTYNGDFFDWPFIDARAKIHGIDMKDETGFAPDAQKEYKSSYGIHMDAFRWVQRDSYLPVGSQNLKAVTKAKLRYNPVEVDPEEMVRMASEEPTEMANYSVSDAVATYYLYMQYVHPFIFALCTIIPMDPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQIHTKFFE-GHLLDTETYVGGHVEALESGVFRSDIASRFRMVPEAFQGLIDNIHDTIKTTVENEEGVPIEFVTNMDEVCEDVVKQLEELRDTPNRLEKPMIYHLDVAAMYPNIILTNRLQPPAQVNEVTCAACDFNKPGAKCQRKLTWMWRGDYSPANYSEYQNIRSQLEVEKMPGRFPGDPPRNFHQLWPAEQSLQEKKRLADYSHKAYKKTKITKSELRSTVICQRENSFYIDTVRAFRDRRYEYKGLLKVWKKKVSAAVDKGDPAEVKHAKGMEVLYDSLQLAHKCILNSFYGYVMRKGSRWFSMEMAGIVCYTGANIITQARELVEQIGRPLELDTDGIWCILPASFPENFLVKTTHPKKPKITISYPGAMLNYIVQTNFTNDQYHNLKNAEKLDYEIRKENSIFFEVDGPYKAMILPAAKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLQGTSLETCYAAVAKIADYWLDVLYTKGENLPDSELFELISENRSMSKALEEYGSQKSTSISTAKRLAEFLGDQMVKDKGLACRFVISRRPEGAPVTERAIPLAIFQTEESIKKHYLKKWLKVPANFDFDIRNILDWNYYIERLNSCIQKIVTIPAALQGVSNPVPRCQHPDWLRKRLLEKNDSFQQQRITDMFTKLKKKKAAEPPKNADPDVQVIEESND-----IADIEEIGGASAGKRAHTTPPAPTVTKKRKVDKHVENTEFVESDLLKS--WKEVLGNPPSMGTTKDEQEAWVTFHKRKWTLQRLQRAAARESRRQLRKEGVNVEHHRRALPQSGLDNFFQKQARTILESTWEIIQVSESAVPGVFNVFSMINNDLHNIKVNIPRIFYVNSKKLKEGHGATWRKVNKILPRSYPSMHLYQYAVPEAIFREHSSELVADLSSPDVEGIYETQVPLDVRAVIKLGCVCRVHRNVARALNGRDVDNFNLDQLEFKTLAGNTYLETDKLKHIYFYHGQLDNRAIYALFMPASQKVSVFVLNTVKSNQMPNLSNLYKNERSNRILEMEEMGRAYTPPDVSSYSFDVRVETDTRLLYRDIQRALSAYRDEKRGPTLVMLQTQSDQAHWKANIPELDNFPLVEMPSVEIDTDQLNALDWQRQFAKKFIQAYLGVNDWLQAQLDQARYFHIPVGNIPPNDPFLYASDIFFARHLSRSNHVLWISPTDRPDLGGKEEDNFRLVTEFDEGGSPEINQPGCYSTVCVEISIDSLAVNTVLQSHHVHDAEGVAS---SLDTIQQASLEEMLNSRSGAAATLTSYDEAASCAQSFKVLKGLIISWIQEVFANRNDFADTQLIHFYRYLRSPEAMLYDPALCKYIHGLMKKFFMQLIAEFKTLGSTIVYANFNKIILNSKKRRVKDALAYVQYILTSIRSKPLFKNIALEPRSCWEYLMWMDPANHGGIRAKEIPENFMSNVDDEEKEENGNEFDSDDDEDIRDLVAHAK-------EQKVEMNWNLEKFLPTSAACQTFFKVCIADHIHSVYVHIVEQLQTHKGGSTPVKRRGLST-QQEMMAETTTTPSTVEFAQSRIQDVLTEQLFGITQKIHKTLSGGRGKDAGLE-FPVLAGSHLPLKNPSLEFIKAVCQVLQLDVNIRNQVNKLRRDLLKLVGIGQFADEANFQDPCLSFIVPEMICEYCNSCRDLDLCRDPLITPAKGNQPASVRCDNPDCQQQYNMSLVEEQLVLMLSRRAMSYTLQDLKCLKCKMVKDKNMSKFCECAGRFGNLTSPDDFKKQLKIFGNIAKHYQMSHLQETLDFM 2169
            G ERE+++FL+KKF G IA +E + KEDLDL NHL GLK+ Y++LSFH V++L+K++ ++ P V+KN+E++ A +A  AL++      G  +    +SK  +DQ+DNI+D+REYDVPY++R+SID KI V HWY V+ RG    VEIT R DL+ RPDPVV+AFDIETTKLPLKFPD+  D IMMISYMIDGQGYLITNREI+SEDIEDFE+TP+PEYEGP  VFNEPDEA L++RWF+H+ ETKP I VTYNGDFFDWPF++ARA +HG+ M+ E GF  D+Q EYK+   IHMD  RWV+RDSYLPVGS NLKA  KAKL Y+PVE+DPE+M RMA+E+P  +A YSVSDAVATYYLYM+YVHPFIFALCTIIPM+PDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQ   K  + GH+LD+ETYVGGHVEALESGVFRSDI  RFRM P AF  L+  +  T++  +E EE VP+E VTN +EVC+++  +L  L+D P+R+E P+IYHLDV AMYPNIILTNRLQP A V+E TCAACDFNKPGA CQRK+ W WRG++ PA+ SEY  I+ QLE EK P  FP  P R FH+L   EQ+  EK+RLADY  KAYKK  ITK E R T ICQRENSFY+DTVRAFRDRRYE+KGL KVWKKK+SAAV+ GD AEVK  K MEVLYDSLQLAHKCILNSFYGYVMRKG+RW+SMEMAGIVC+TGANIITQAREL+EQIGRPLELDTDGIWC+LP SFPENF+ KTT+ KKPK+TISYPGAMLN +V+  FTNDQY  L     L Y  R ENSIFFEVDGPY AMILPA+KEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFL+G++LE  Y +VAK+ADYWLDVLY+K  N+PDSELFELISENRSMS+ LE+YG QKSTSISTAKRLAEFLGDQMVKD GL+CR++ISR+PEG+PVTERAIPLAIFQ E +++KH+L+KWLK  +  DFDIR ILDW+YYIERL S IQKI+TIPAALQ V NPVPR +HPDWL K+LLEKND ++Q++I+++FT   +++           V + E S D       D+E+ G     K  H  P AP   K+++V   +  ++    DL  +  W+E+LG PP++GT+++E   W+ FHK+KW LQ  QR A R+ +R    EGV      R  P +GL +F ++ AR+IL+  W+I+Q+SE++  G+F +++++ +DLH I+++IPR+FYVN +  K   GA++RKVN++LPRS    +LY+Y+VPE +++EH +E+ A+LS+PD+EG+YETQVPL  RA++ LGCVC V++ + R L+G + + F L+ LE ++LA  +YLE   ++HIY YH    ++A++ +F+P+ ++ SVFVL+TV+SNQMP+L  LY  E     L +E++G    PP    ++F+VR ETD + + R IQR L AY++E+RGPTL+ +Q+  +     + IP L+ FPLV  P    D      LDWQR  A++ I+ YL ++  L    + +RYFHIP+GN+ P D   + SD+FFARHL R NH+LW+SPT RPDLGGKE D+  LV EFD+  + EIN  GCYSTVCVE+ + +LAVNT+LQSHHV+D EG  S   S D IQQASLE+M+     A+A   SYDE A C+ +F++LK +++ W++E+    N +AD Q++HFYR+LRSP ++L+DPAL + +H +MKK F+QLIAEFK LGS+++YANFN+IIL +KKRRV+DA+AYV+YI +SI SK  F ++ +    CWE+L+WMDP+N+GGI+ K +       + D +K     +   ++D++        +       E  +E NWN+ +FLP +A+CQ +F + ++ +I +VY  + + L+    GSTPV+RRG S   QE        P  + F+Q  + + LT+  F ITQKI K ++G R      E FPVL GSHL L NP+LEFIK VC+VL LD NI NQVNKL RDLL+LV +G+F++EA F+DPC S+++PE+IC  CN CRDLDLC+D   +      P  + C N  CQ  Y+ S +E  LV +L ++ M++TLQDL CLKC+ VK+ +M  +C CAG F        F +Q+ IF NIA+HY MS+L ETL+++
Sbjct:  111 GCEREVSSFLSKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIRLSFHTVEDLVKVRKEISPAVKKNREQDHASDAYTALLSSVLQRGGVITDEEETSKKIADQLDNIVDMREYDVPYHIRLSIDLKIHVAHWYNVRYRGNAFPVEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQEIGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKLTDDGHVLDSETYVGGHVEALESGVFRSDIPCRFRMNPAAFDFLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLKDVPSRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRKMAWQWRGEFMPASRSEYHRIQHQLESEKFPPLFPEGPARAFHELSREEQAKYEKRRLADYCRKAYKKIHITKVEERLTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSAAVEVGDAAEVKRCKNMEVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVFKTTNVKKPKVTISYPGAMLNIMVKEGFTNDQYQELAEPSSLTYVTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEVYGSVAKVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYIISRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWLKSSSLQDFDIRAILDWDYYIERLGSAIQKIITIPAALQQVKNPVPRVKHPDWLHKKLLEKNDVYKQKKISELFTLEGRRQ-----------VTMAEASEDSPRPSAPDMEDFGLV---KLPH--PAAPVTVKRKRV---LWESQEESQDLTPTVPWQEILGQPPALGTSQEEWLVWLRFHKKKWQLQARQRLARRKRQRLESAEGVLRPGAIRDGPATGLGSFLRRTARSILDLPWQIVQISETSQAGLFRLWALVGSDLHCIRLSIPRVFYVNQRVAKAEEGASYRKVNRVLPRSNMVYNLYEYSVPEDMYQEHINEINAELSAPDIEGVYETQVPLLFRALVHLGCVCVVNKQLVRHLSGWEAETFALEHLEMRSLAQFSYLEPGSIRHIYLYHHAQAHKALFGIFIPSQRRASVFVLDTVRSNQMPSLGALYSAEHG---LLLEKVGPELLPP--PKHTFEVRAETDLKTICRAIQRFLLAYKEERRGPTLIAVQSSWELKRLASEIPVLEEFPLV--PICVADKINYGVLDWQRHGARRMIRHYLNLDTCLSQAFEMSRYFHIPIGNL-PEDISTFGSDLFFARHLQRHNHLLWLSPTARPDLGGKEADDNCLVMEFDDQATVEINSSGCYSTVCVELDLQNLAVNTILQSHHVNDMEGADSMGISFDVIQQASLEDMITGGQAASAP-ASYDETALCSNTFRILKSMVVGWVKEITQYHNIYADNQVMHFYRWLRSPSSLLHDPALHRTLHNMMKKLFLQLIAEFKRLGSSVIYANFNRIILCTKKRRVEDAIAYVEYITSSIHSKETFHSLTISFSRCWEFLLWMDPSNYGGIKGK-VSSRIHCGLQDSQKAGGAEDEQENEDDEEERDGEEEEEAEESNVEDLLENNWNILQFLPQAASCQNYFLMIVSAYIVAVYHCMKDGLRRSAPGSTPVRRRGASQLSQEAEGAVGALPGMITFSQDYVANELTQSFFTITQKIQKKVTGSRNSTELSEMFPVLPGSHLLLNNPALEFIKYVCKVLSLDTNITNQVNKLNRDLLRLVDVGEFSEEAQFRDPCRSYVLPEVICRSCNFCRDLDLCKDSSFSEDGAVLPQWL-CSN--CQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAGDFALTIHTQVFMEQIGIFRNIAQHYGMSYLLETLEWL 2277          
The following BLAST results are available for this feature:
BLAST of TCONS_00062325-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOE10.000e+057.53DNA polymerase epsilon catalytic subunit A OS=Homo... [more]
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