TCONS_00062718-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062718-protein
Unique NameTCONS_00062718-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062718-protein ID=TCONS_00062718-protein|Name=TCONS_00062718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp
FLNKTVPPETPANLQLQVGNDDDGSHNLKSIHEIPEKYRSIFPFAYFNAL
QSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLFSTTNFTYKIVYL
APIKALCSERYQDWTSKFGPFGLKCTELTGDTDIDDFQELHKAHIVFTTP
EKWDSMTRRWRDQKSLVQTVRLFLIDEVHLLGDDVRGATMEAVVSRMKTI
QVAINSEKEDSNSPAMRFLAISATIPNVNDIGSWLDTGLLPAVTFSLGDD
YRPVQLRKIVLGYPCSAKQSDFKFDLALNYKLSNIIQTYSENKPTLIFGN
TRKGVSQAAGILVKDARFVMNAQHKQTLTRYANIIHDSKLQELVIQGVGF
HHAGLDNDDRKNVEELFLNGHLPVLFCTSTLAMGVNLPAHLVIIKGTMYY
GMGGFIEYSEAQIFQMIGRAGRPQFDTSATAVIMTKQQNKEKYQNLISGT
QQIESSLHLHLTEHINAEIVLGTITDSNIAQEWLKSTFLYVRMCENPKFY
ALLVSMH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039295XLOC_039295Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062718TCONS_00062718Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 43..260
e-value: 7.3E-24
score: 95.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 56..243
score: 21.015
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 334..424
e-value: 9.3E-16
score: 68.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 284..422
e-value: 1.0E-8
score: 35.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 284..469
score: 11.52
NoneNo IPR availableGENE3D3.40.50.300coord: 267..470
e-value: 1.0E-23
score: 83.2
NoneNo IPR availableGENE3D3.40.50.300coord: 21..252
e-value: 1.5E-34
score: 118.6
NoneNo IPR availableCDDcd00046DEXDccoord: 65..225
e-value: 9.39211E-20
score: 84.6964
NoneNo IPR availableCDDcd00079HELICccoord: 321..434
e-value: 6.42022E-13
score: 64.5664
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 50..229
e-value: 1.8E-26
score: 92.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 42..236
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 248..449

Blast
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BLAST of TCONS_00062718-protein vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 286/484 (59.09%), Postives = 360/484 (74.38%), Query Frame = 0 
Query:   22 DDGSHNLKSIHEIPEKYRSIFP-FAYFNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLFSTTN--FTYKIVYLAPIKALCSERYQDWTSKFGPFGLKCTELTGDTDIDDFQELHKAHIVFTTPEKWDSMTRRWRDQKSLVQTVRLFLIDEVHLLGDDVRGATMEAVVSRMKTIQVAINSEKEDSNSPAMRFLAISATIPNVNDIGSWLDTGLLPAVTFSLGDDYRPVQLRKIVLGYPCSAKQSDFKFDLALNYKLSNIIQTYSENKPTLIFGNTRKGVSQAAGILVKDARFVMNAQHKQTLTRYANIIHDSKLQELVIQGVGFHHAGLDNDDRKNVEELFLNGHLPVLFCTSTLAMGVNLPAHLVIIKGTMYYGMGGFIEYSEAQIFQMIGRAGRPQFDTSATAVIMTKQQNKEKYQNLISGTQQIESSLHLHLTEHINAEIVLGTITDSNIAQEWLKSTFLYVRMCENPKFYAL 502
            ++G  +LK++ EIP K+RSIF  F YFN +QSK FD+++Y+D   VICAPTGSGKT +FE++I RLL          KIVY+APIKALCS+R+ DW  KFGP GL C ELTGDT +DD  E+  AHI+ TTPEKWDSMTR+WRD  SLVQ VRLFLIDEVH++ D+ RG T+E VVSRMKT+Q    + K  S +  MRF+A+SATIPN  DI  WL  G  PAV   + + +RPV+L+K+VLG+PCS+ Q++FKFDL LNYK++++IQ YS+ KPTL+F  TRKGV QAA +LVKDA+F+M  + KQ L +YA  + DSKL++++  G  +HHAG++  DRK VE  F  G LPVLF TSTLAMGVNLPAHLV+IK TM+Y  G F EYSE  I QMIGRAGRPQFDT+ATAVIMT+   ++KY  +++    +ESSLH HL EH+NAEIVL TITD NIA EW++ST LY+R  +NP  Y  
Sbjct:  255 ENGLGSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDN-SLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGF 737
The following BLAST results are available for this feature:
BLAST of TCONS_00062718-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HFM10.000e+059.09Probable ATP-dependent DNA helicase HFM1 OS=Homo s... [more]
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