TCONS_00062942-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062942-protein
Unique NameTCONS_00062942-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062942-protein ID=TCONS_00062942-protein|Name=TCONS_00062942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MSGFLYSVYIINKAGGLVYQRDHSISETEISRQFNYPTGLVLKELDEKLV
VSYGEKNGIKVGHSFVAINGEYLSGKYMPNGELVQDYLKNEKNFPANLTF
CKPKLTTNERIMLASMFHSLFAISCKLSPVEKSSGIELLETNSFKLHCFQ
SITGVKFLVLTDPRVMNMDAFLKKLYEFYSDYALKNPFYSLEMPIRCDLF
DTNLQKHLEQTEKSIAHGVNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039428XLOC_039428Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062942TCONS_00062942Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007233TRAPPC
IPR011012Longin-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0030008 TRAPP complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 5..211
e-value: 4.6E-95
score: 331.8
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 6..210
e-value: 1.4E-54
score: 183.8
NoneNo IPR availableGENE3D3.30.450.70coord: 4..219
e-value: 5.5E-50
score: 168.7
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 6..22
coord: 99..210

Blast
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BLAST of TCONS_00062942-protein vs. Swiss-Prot (Human)
Match: TPPC4 (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 4.674e-92
Identity = 119/217 (54.84%), Postives = 170/217 (78.34%), Query Frame = 0 
Query:    5 LYSVYIINKAGGLVYQRDHSISETEISRQFNYPTGLVLKELDEKLVVSYGEKNGIKVGHSFVAINGEYLSGKYMPNGELVQDYLKNEKNFPANLTFCKPKLTTNERIMLASMFHSLFAISCKLSPVEKSSGIELLETNSFKLHCFQSITGVKFLVLTDPRVMNMDAFLKKLYEFYSDYALKNPFYSLEMPIRCDLFDTNLQKHLEQTEKSIAHGVNS 221
            ++SVY++NKAGGL+YQ D      E  + F+YP  L+LK  DE+++V++G+++GI+VGH+ +AING  ++G+Y  +G+ V +YL N  N+P ++ F +P+LT+NE++MLASMFHSLFAI  +LSP + SSGIE+LET++FKLHC+Q++TG+KF+VL DPR   +D+ L+K+YE YSD+ALKNPFYSLEMPIRC+LFD NL+  LE  EK+   G  S
Sbjct:    3 IFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPGS 219
The following BLAST results are available for this feature:
BLAST of TCONS_00062942-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPPC44.674e-9254.84Trafficking protein particle complex subunit 4 OS=... [more]
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