TCONS_00069779-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069779-protein
Unique NameTCONS_00069779-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069779-protein ID=TCONS_00069779-protein|Name=TCONS_00069779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp
MEVDSHQDDHQLLDWEAKLFLEIMEDDGLLVLAKGLGLDRMFLKVVQTFC
KQDNLVFVLNTIPEEQFHFLNELSALDVKHLPKVISDSSVEERRQLYLQG
GVFFVSSKILVMDMLTKRVPIDYITGILVTRAHKIAESSQESFILRMFRE
HNSDGFIKAFSDIPTAFMAGYCQVERVMKLLFIRHLFLRPRFHNEIAACL
ELHKPDVIEVNIEITPKMRAIQLSLLDLLNISLRELKRAVPNLDPDHFTL
ENSLNRTFDRMLKVQLDSVWNELANRTKELVSDIRVLRTLLSYLTQYDCV
TFYNFLDTLKKNEKNKKSMWMLTDAANTVYVNAKERVMGVPEKDKKGKVV
KKGKPEPCPKWEILTEILDEIEKEKVNQDEKKVLVCAVDDRTSYQLSQVL
CHGIDSFLQGQYERSALSTGYHSGSAEETDSDFSMNFSKFSDNEKAGDKG
KSDEEDNDSKFSLDLNTNPLIIHSLHGSADHYSLFQTLYEFEPTYVVLFD
ASVEFVRQLEVFKASRPGIPLRVYFLFYSSSIEEQRYLTSLRQEKDAFEL
LIRQKADMVIPEERQAKTQAAKSSLRDASKASATVVSSRKAGGRDVQNAK
TRNIVVDMREFGSELPNMLYCRGIELLPVTLEVGDYILTPDICVERKSVS
DLIGSLNNGRLYTQCVSMTRFYRKPVLLIEFNESKSFSLQAKGSLKNEIS
LQNISSKLTLLTIHFPKLRIIWSQSPQLTAEIFEDLKSNADEPNAEVAMA
VGVEGAGQQNHFYNIIQQDLVDRLPGVNMKNCRHILNKFNTMKELMNTDE
KTISDVFGNANNAKLLSNFIHKKHDVTQPKMKRRKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043452XLOC_043452Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069779TCONS_00069779Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006166ERCC4_domain
IPR011335Restrct_endonuc-II-like
IPR010994RuvA_2-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0004518nuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006166ERCC4 domainSMARTSM00891ERCC4_2coord: 603..683
e-value: 4.8E-26
score: 102.5
IPR006166ERCC4 domainPFAMPF02732ERCC4coord: 606..733
e-value: 1.2E-21
score: 77.5
NoneNo IPR availableGENE3D3.40.50.10130coord: 602..750
e-value: 1.4E-38
score: 131.4
NoneNo IPR availableGENE3D1.10.150.20coord: 754..835
e-value: 4.7E-8
score: 32.4
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 604..741
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 759..824

Blast
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BLAST of TCONS_00069779-protein vs. Swiss-Prot (Human)
Match: XPF (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3)

HSP 1 Score: 410.223 bits (1053), Expect = 1.094e-129
Identity = 201/378 (53.17%), Postives = 277/378 (73.28%), Query Frame = 0 
Query:  454 EEDNDSKFSLDLNTN--------PL-IIHSLHGSADHYSLFQTLYEFEPTYVVLFDASVEFVRQLEVFKASRPGIPLRVYFLFYSSSIEEQRYLTSLRQEKDAFELLIRQKADMVIPEERQAKTQAAKSSLRDASKASATVVSSRKAGGRDVQNAKTRNIVVDMREFGSELPNMLYCRGIELLPVTLEVGDYILTPDICVERKSVSDLIGSLNNGRLYTQCVSMTRFYRKPVLLIEFNESKSFSLQAKGSLKNEISLQNISSKLTLLTIHFPKLRIIWSQSPQLTAEIFEDLKSNADEPNAEVAMAVGVEGAG-QQNHFYNIIQQDLVDRLPGVNMKNCRHILNKFNTMKELMNTDEKTISDVFGNANNAKLLSNFIH 821
            EE    +F ++L+++        PL IIH L G +D Y+L + L+E EP YVVL+DA + FVRQLE+++ASRPG PLRVYFL Y  S EEQRYLT+LR+EK+AFE LIR+KA MV+PEER+ + +     +R  + A  +   +RKAGG++ QN   ++IVVDMREF SELP++++ RGI++ PVTLEVGDYILTP++CVERKS+SDLIGSLNNGRLY+QC+SM+R+Y++PVLLIEF+ SK FSL ++G+L  EIS  +ISSKLTLLT+HFP+LRI+W  SP  TAE+FE+LK +  +P+A  A+A+  +     ++  YN   QD + ++PGVN KNCR +++    + EL    +  ++ + GNA NAK L +FIH
Sbjct:  527 EEIKHEEFDVNLSSDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVST-DTRKAGGQE-QNGTQQSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 902

HSP 2 Score: 382.489 bits (981), Expect = 4.137e-119
Identity = 193/425 (45.41%), Postives = 284/425 (66.82%), Query Frame = 0 
Query:   12 LLDWEAKLFLEIMEDDGLLVLAKGLGLDRMFLKVVQTFCKQDNLVFVLNTIPEEQFHFLNELSALDVKHLPK-VISDSSVEERRQLYLQGGVFFVSSKILVMDMLTKRVPIDYITGILVTRAHKIAESSQESFILRMFREHNSDGFIKAFSDIPTAFMAGYCQVERVMKLLFIRHLFLRPRFHNEIAACLELHKPDVIEVNIEITPKMRAIQLSLLDLLNISLRELKRAVPNLDPDHFTLENSLNRTFDRMLKVQLDSVWNELANRTKELVSDIRVLRTLLSYLTQYDCVTFYNFLDTLKKNEK--NKKSMWMLTDAANTVYVNAKERVMGVPEK--DKKGKV-----VKKGKP-------EPCPKWEILTEILDEIEKEKVNQDE----KKVLVCAVDDRTSYQLSQVLCHGIDSFLQGQYERS 415
            LL++E +L LE+++ DGL+V A+GLG DR+    +Q  C    LV VLNT P E+ +F+N+L    V+HLP+ V ++ +   R ++Y QGGV F +S+ILV+D LT R+P D ITGILV RAH+I ES QE+FILR+FR+ N  GFIKAF+D   AF  G+C VERVM+ LF+R L+L PRFH  + + LE HKP+V+E+++ +TP M AIQ ++LD+LN  L+ELK   P+L+ +  +LEN++ + FD+ ++  LD +W++L  +TK LV D+++LRTLL YL+QYDCVTF N L++L+  EK   + S W+  D++ ++++NA+ RV  +P+    KK K+     +K+G+        E  PKWE LTE+L EIE E    +      +VL+CA DDRT  QL   +  G ++FL   Y ++
Sbjct:   15 LLEYERQLVLELLDTDGLVVCARGLGADRLLYHFLQLHCHPACLVLVLNTQPAEEEYFINQLKIEGVEHLPRRVTNEITSNSRYEVYTQGGVIFATSRILVVDFLTDRIPSDLITGILVYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAILDILNACLKELKCHNPSLEVEDLSLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLESLRATEKAFGQNSGWLFLDSSTSMFINARARVYHLPDAKMSKKEKISEKMEIKEGEETKKELVLESNPKWEALTEVLKEIEAENKESEALGGPGQVLICASDDRTCSQLRDYITLGAEAFLLRLYRKT 439
The following BLAST results are available for this feature:
BLAST of TCONS_00069779-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPF1.094e-12953.17DNA repair endonuclease XPF OS=Homo sapiens GN=ERC... [more]
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