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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004034 ID=TCONS_00004034|Name=TCONS_00004034|organism=Clytia hemisphaerica|type=transcript|length=2341bp
AGCACGGCATGGAAGGTCATTTGTGACGGACAAAATATGAATATCAAAAA
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGCA
TGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatatttt
ccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCTG
TCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGGG
GATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTCC
AACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAAC
CCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGCCACC
ACAGAACAACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACA
ACCCGAAGTGATCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAG
TAACAACGGAACAACCCGAAGTCACCACGGAAGAACCCGAAGTAACCACG
GAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAACGGGAGAACC
CGAAGTAACCACAGAACAACCTGAGGCCACCACAGAACAACCCGAGGCCA
CCACAGAACAACCCGAAGTAACTACGGAAGAACCCGAGCAAGCCACGGAA
TCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGTCTTAGA
GGATTTCGAAGtgaattaaaagaaaaactgttttttattaTCGCTTATCT
AGAAAACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTTCTACCA
TTTCTCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTATGTGGAA
ACTTTACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGCTATGCA
TCGTTGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTAACTTAC
TTTAGTACtaagtaaaaaaaagtaaagcGTCCACAAATACTTTTGATACG
CGGATTTGGGtttcatccgcgaaattaagtctcaaTGGAATGTTTTCAAA
CAAATATCCTGTCAAATAAACTACTTTTtcaatgtttactggcatcaaag
aagtgctAATAGCGCGTCTTtaaacaaccaacatgcatgatgtgatgatt
tgacagtaaaagcaACGAActcgtgaaaatattgtctcccaatagtgcca
cccgcgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTGCAAACA
ATTTGGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGACTCGGT
AggatttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTGATACTC
CCATGTTTTATATGGCTGgagaattccattgtttttgagcaAGAAAATTC
AGAGGGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTTTCTTAT
CTGGTTATTTTCAgcagggacaaaaattggagaaaaactTTCAGATagga
acgatattttggccaatttttccagtagcAAGGGGGTCCCAGTGGAGTGG
gtatgtgagaagggggtgttttaagttttttttaaacctGCATTTCAGCA
AGAAGTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGCTTATAA
TTTTTAATGAGAATTtactatggcgcgccaaagcggaaataaatactatc
tttcatttcgcgacactatctttcatttcgcgacactatct Run BLAST on NCBI transcript from alignment at sc0000039:461096..463642+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004034 ID=TCONS_00004034|Name=TCONS_00004034|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at sc0000039:461096..463642+ (Clytia hemisphaerica)
AGCACGGCATGGAAGGTCATTTGTGACGGACAAAATATGAATATCAAAAA
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGGTAAGTTAGTGTAAAAAATCAACTAAAACCTCGCCA
GCATTGATATAACATCAATAGTTTCAAACGAAACCAAAATCcttattttc
acttttaatttttagtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGC
ATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatattt
tccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCT
GTCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGG
GGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTC
CAACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAA
CCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGTAAC
AACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCACCACAGAAC
AACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAA
GTGATCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAAC
GGAACAACCCGAAGTCACCACGGAAGAACCCGAAGTAACCACGGAACAAC
CCGAAGTAACAACGGAACAACCCGAAGTAACAACGGGAGAACCCGAAGTA
ACCACAGAACAACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGA
ACAACCCGAAGTAGCCACAGAACAACCCGAAGTAACCACGGAAAAACCCG
AAGTCACAACGGAAGAACCCGAGGTAACTACGGAAGAACCCGAGCAAGCC
ACGGAATCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGT
CTTAGAGGATTTCGAAGtgaattaaaagaaaaactgttttttattaTCGC
TTATCTAGAAAACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTT
CTACCATTTCTCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTAT
GTGGAAACTTTACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGC
TATGCATCGTTGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTA
ACTTACTTTAGTACtaagtaaaaaaaagtaaagcGTCCACAAATACTTTT
GATACGCGGATTTGGGtttcatccgcgaaattaagtctcaaTGGAATGTT
TTCAAACAAATATCCTGTCAAATAAACTACTTTTtcaatgtttactggca
tcaaagaagtgctAATAGCGCGTCTTtaaacaaccaacatgcatgatgtg
atgatttgacagtaaaagcaACGAActcgtgaaaatattgtctcccaata
gtgccacccgcgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTG
CAAACAATTTGGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGA
CTCGGTAggatttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTG
ATACTCCCATGTTTTATATGGCTGgagaattccattgtttttgagcaAGA
AAATTCAGAGGGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTT
TCTTATCTGGTTATTTTCAgcagggacaaaaattggagaaaaactTTCAG
ATaggaacgatattttggccaatttttccagtagcAAGGGGGTCCCAGTG
GAGTGGgtatgtgagaagggggtgttttaagttttttttaaacctGCATT
TCAGCAAGAAGTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGC
TTATAATTTTTAATGAGAATTtactatggcgcgccaaagcggaaataaat
actatctttcatttcgcgacactatctttcatttcgcgacactatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004034-exon-sc0000039-1491911889:461096..461709 | TCONS_00004034-exon-sc0000039-1491911889:461096..461709 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1510915933:461096..461709 | TCONS_00004034-exon-sc0000039-1510915933:461096..461709 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1575043694:461096..461709 | TCONS_00004034-exon-sc0000039-1575043694:461096..461709 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1491911889:461811..462140 | TCONS_00004034-exon-sc0000039-1491911889:461811..462140 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1510915933:461811..462140 | TCONS_00004034-exon-sc0000039-1510915933:461811..462140 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1575043694:461811..462140 | TCONS_00004034-exon-sc0000039-1575043694:461811..462140 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1491911889:462183..462455 | TCONS_00004034-exon-sc0000039-1491911889:462183..462455 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1510915933:462183..462455 | TCONS_00004034-exon-sc0000039-1510915933:462183..462455 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1575043694:462183..462455 | TCONS_00004034-exon-sc0000039-1575043694:462183..462455 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1491911889:462519..463642 | TCONS_00004034-exon-sc0000039-1491911889:462519..463642 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1510915933:462519..463642 | TCONS_00004034-exon-sc0000039-1510915933:462519..463642 | Clytia hemisphaerica | exon |
| TCONS_00004034-exon-sc0000039-1575043694:462519..463642 | TCONS_00004034-exon-sc0000039-1575043694:462519..463642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:461096..463642 + |
Blast
The following BLAST results are available for this feature:
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