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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004371 ID=TCONS_00004371|Name=TCONS_00004371|organism=Clytia hemisphaerica|type=transcript|length=3405bpRun BLAST on NCBI protein sequence of TCONS_00004371-protein >TCONS_00004371-protein ID=TCONS_00004371-protein|Name=TCONS_00004371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp MNVEDTLERCENRLSFLSNKLSEYGKTQQYIKESADSTKKALQGHLMHAKRun BLAST on NCBI transcript from alignment at sc0000044:584679..598853+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004371 ID=TCONS_00004371|Name=TCONS_00004371|organism=Clytia hemisphaerica|type=transcript|length=14175bp|location=Sequence derived from alignment at sc0000044:584679..598853+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:584679..598853+ >TCONS_00004371 ID=TCONS_00004371|Name=TCONS_00004371|organism=Clytia hemisphaerica|type=CDS|length=10584bp|location=Sequence derived from alignment at sc0000044:584679..598853+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004371 vs. Swiss-Prot (Human)
Match: CRLF3 (Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 4.276e-41 Identity = 121/436 (27.75%), Postives = 201/436 (46.10%), Query Frame = 3
Query: 105 LSNKLSEYGKTQQYIKESADSTKKALQGHLMHAKETILRNLDHQYERLCTSVDETVKKDIENLFDLEEHLKKEIENLKNILASVK------ADEKQLNLQQINQKVTEIG-KSQPELPVVS--LSFSTKINEAALHSIEDKTRDLLKLNMTGSVQIMETLERPGAIIVRWDEQPMSDSESVATDTSTITEYILQATTKNDGVFYTIYEGENLEYTMTLAEPSKTYKFRVCQYMNTTNGGAVCGAWSVIKTAATMLSPHVWCEGDCRTDSDLQLYQLSNGGRTATKVFPESSRILRSKEPSCQSGQQITFWVDETGESSSNDGIGLICGTQTNKQFTASPNTTVLNTKGIIYVNGTRMTTKLPSLKKNSIIV--IQASKLAHTLNS--GAKKYRVSISVDDKEVTFDWSASTTSAANEIDALFFGCVFEHTGWQLSV 1373
L ++L + ++ IKESA T+ L+ H K T+ + LD + L VD ++ I+ L D ++ ++ + ++++ + E+ L +K + I S PE+P++ S +++++ L+ ++D + VQI E +E+PG IIVRW D T +Y LQ F +Y G E+ + +P+ Y+FRVC +G WSV + + L PH W G + Y LS+ A + ESS +L S+ P+ GQ +TF V+ G+ D IG+ Q ++T G ++VNG MT +LP++ S + I+A L T N+ G K RV+IS +++EV FDW + +L+FGC F + GW++ V
Sbjct: 30 LGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRW---------CKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCA---RGDGRQEWSPWSVPQIGHSTLVPHEWTAG-------FEGYSLSSRRNIALRNDSESSGVLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLDQSCG-----SLYFGCSFFYPGWKVLV 441 The following BLAST results are available for this feature:
BLAST of TCONS_00004371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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