TCONS_00048488 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048488
Unique Name	TCONS_00048488
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1078

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_143:10442..14381+
coding sequence from alignment at scaffold_143:10442..14381+

transcript sequence

>TCONS_00048488 ID=TCONS_00048488|Name=TCONS_00048488|organism=Clytia hemisphaerica|type=transcript|length=1078bp
tttaaagtgatagagatgacgcgttctttagaaaagtaataagattcttt
tattacatcttaacgaccaaccaaatcaaacaagagcttgtaaaaactgc
AGCTTGTCCCAGAGAAACCTGGTATATAGGAGTACTGAGTCCGAGTGTTA
TTATCATAAAAAATTCTTCTCAGCATTTCAGATataaaagaatcaaaaaa
tatGTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTC
AATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAA
TGTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAA
GTGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGA
AGAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGC
AAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGG
AGcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTA
AACAATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAA
CGGTTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGC
TGCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAG
CTTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGC
TTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAc
aatgaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCA
ACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAACAAGCGATTAT
AACAAAGCATACAAAGAGACACGTTGGTTTGCTGGCTTAACCAACAATGA
TTACCCGTCTACCATCTTTAAAGAGAGGTGGTTCTTCTTAAAGCAATACT
TCGAAACAACCAAAactaaataaagctttttatttCAAGTGAGGGGATAT
AGTGTTAATTATAAAAACTTTCTGAAAC

Run BLAST on NCBI

protein sequence of TCONS_00048488-protein

>TCONS_00048488-protein ID=TCONS_00048488-protein|Name=TCONS_00048488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MYKILTFILLASEICCQWIPVEKNEDSPCYNYKCPFGQRCVIINNQPICK
CNHNCDKSEKTGPVCTKSGRTYPNLCKLKQDECKRGDYIMVDHFGACKTG
AVRCYDNKKESELGLCKQWKEHGACTKHTNLMKRFCRATCDMCDVKALPA
ACMESKFGCCPGNKIQALGPRNKGCFNGCRDGRLCPFFPNFCGDEANKET
MKKFCPYTCRYCVPEGNERVEILTEDNL

Run BLAST on NCBI

transcript from alignment at scaffold_143:10442..14381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048488 ID=TCONS_00048488|Name=TCONS_00048488|organism=Clytia hemisphaerica|type=transcript|length=3940bp|location=Sequence derived from alignment at scaffold_143:10442..14381+ (Clytia hemisphaerica)
tttaaagtgatagagatgacgcgttctttagaaaagtaataagattcttt
tattacatcttaacgaccaaccaaatcaaacaagagcttgtaaaaactgc
AGCTTGTCCCAGAGAAACCTGGTATATAGGAGTACTGAGTCCGAGTGTTA
TTATCATAAAAAATTCTTCTCAGCATTTCAGATataaaagaatcaaaaaa
tatGTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTC
AATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAA
TGTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAA
GTGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGA
AGAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGC
AAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGG
AGGTTAGaaattaaattcaattgtgCTTTAGCCTTTGACGTACCTTAGCC
TGCccttttgtgtgaaaaaaaattaaatctttatCAGCTGAGCCAAGCTG
GAGAAATTTAAGTTAGAAGTTGCCTCATATTATTCATCGTTAGTTGACTT
GGCTAGTCATCATCTTTCGGGTTAGAATTCCTCTTTTAACTTTACAAATG
ATTCATTGGTTTTAACTTCGAAAGAAAGAATGGAATTTGATGTTTCTTGA
TGCTTTTCCTACCTATGATGTGAAATGTCATCAAAAAGGATTATAATGAA
AAGCCAAATAAGTATTAAAAACGCATTTAAAATACTGTTTACATTGAACA
TAGATAATAATCAAGGGATGATCTCCTGAAAGTGTAGTCAACACATCGGT
TGCATCGTATTACTAAGCGATGAGTTACCAAGCTCATATATGAAGAGTTT
AAGATTATaatcaacaaaagaagaaaagctTTACACCACCTTTGGTCAAA
TGATTCGAAATAGAAGGCCGAAAAAAAGCGGGATGAGGTCACAAAGAGAC
TTATAGTAACCAATTTGTTACAAGCCAAAAGATGTAGAGTTTAAGATTAG
AATTAACGAAAGAGGAACCTTTTTTTACGCCTTTTGTGTTCCACAATTTG
ATATAAAAGCCAAAATCGTAGGAAGAGTTCGAAATGAGAGGCACTGCTAA
GCGTGAAAAAGCAAGGTCATTAAAATATTGATAAGAGcacttttcatttt
gtttatttcagcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGG
GTTTGTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACCAAT
TTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGGTAAGCCTTA
CTATTTGCTTTATTCGGGAAATAGTTCatacccctatgttgaggaggtgt
gacgtacAGGGTAGTATGGAAAGTAAAAATTCCAGGGGGTCaggtttttt
gcttttttgtgtaaaaattAACAATGGTCAATAAAATGAGGTTGAAAACA
TTTTCTGGAATAACGCAATTTTTCTGATATCGTCCAaataaaaactagat
ttcaaGCAAACGAAATTTGCCGAATCATCAAATTTTTGCAACTTACTATA
cttgtcttttgtcttttttctatTCACTAGACGTGAAAGCATTGCCAGCT
GCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGC
TTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTAAGTCAGCAATATCCA
TTTCGATCCCATTAATTTCCCATAATGCTTCTTGTTCTTTTTGTGAAACC
ATAATTggcacaaaaaaaactttttagaaaagCAAATTATACCAAACTCT
TGCGTTATCTGATTTTCAGATGGGGGATTGGCGGCCGCCAAGGCAAAAGC
CCTGGTTGCCCCTGCCAATCCCCAacaacgagggctgggttatcAGGCCT
CCCGCACTGATTTataaagtccgaagggctaaATGTCATACTTTAAGCCA
TCGccggcaaaaaaagtgaatatcgcaagaaatattttttccattgtttc
cggaaatcctcgaagcttctgattggtcaagcatTGAAATTCTATTATAA
TGTCGTGTGACGTAGGTagaatttcctacctaaccacggcggcacacttt
tcagccaaagcacgacatctagcccttcgggctttctAATATGTGCCTTC
CGCTgaaaaatccttgacgcggtctcgcaaaattccgtaatgtaaacctt
ccagatgttgaaaatttccccgacattcagagctttagcgtgttggaatt
aaaatttctgcatctgagTGCCAGATAAACTCTGGCGTGGAGCCTGATGA
GTTGCACGGAAATATGTatgcaaagaaaaatattttcattcacCTTCTTG
CTTGTTTGCATACGACAGGTTGCCGAGATGGTCGCTTGTGCCCATTCTTC
CCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaatgaagaaattttg
tccTTACACATGTCGATATTGCGGTGAGTATGATAGATCCCAACTACTCT
GGAAAGAGAAAGAAAACTTACAATAATAGATAATCTATAGAGAGCCAAGA
TATTACTGAATACCCGAATGAATACCCTTGCAATGTTTTATGAATGTTCT
TAAATATTGAAGGCTTCGAAACCTCGTGTTGTTTTTGTAGAGCCAAAACA
TGCATTTGATGTCATATCGATATCAATAGCAATACCTACCATAACGATTT
AGCCCCCGGGGAGGggagggtacttaggcaaattgagggtacggtatgtg
tcgcccttaagggtaccttttgtggatttccaaagtcccgctaaaagtcg
gaaaaatcagaaaatcaaatttcagtcccaccaAGGGTCGTAGAAATAGG
AAGACTTCAACTTTTTAACCCCCGGAAAGATAAAAacttggtcaaatttg
tcccaataaggttcgtaaaatttacaaaattttcctttgttttctctttt
ttagtcccggcaagggtccaagggtcgaaagtcgggcggcaccccccgtc
agctAGCCCTAGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccc
cccccccgtcagctcacaGCCCTAGTAACCCCTCGTCTGGGGATTTATCT
AAACTGAACCCTCCACCGATCTGaacccaaaaaaattaatttctaatTCC
ATAGTACACTTTTCTTCCGGTCGTAAtggaaatttcttcctttgttATAG
TACCTGAAGGCAACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAA
ACAAGCGATTATAACAAAGCATACAAAGAGACACGTTGGTTTGCTGGCTT
AACCAACAATGATTACCCGTCTACCATCTTTAAAGAGAGGTGGTTCTTCT
TAAAGCAATACTTCGAAACAACCAAAactaaataaagctttttatttCAA
GTGAGGGGATATAGTGTTAATTATAAAAACTTTCTGAAAC

Coding sequence (CDS) from alignment at scaffold_143:10442..14381+

>TCONS_00048488 ID=TCONS_00048488|Name=TCONS_00048488|organism=Clytia hemisphaerica|type=CDS|length=3435bp|location=Sequence derived from alignment at scaffold_143:10442..14381+ (Clytia hemisphaerica)
atGTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTCA
ATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAAT
GTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAAG
TGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGAA
GAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGCA
AGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGA
GcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTAA
ACAATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAAC
GGTTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCT
GCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGC
TTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCT
TGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAca
atgaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCAA
CGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAatGTATAAGATAT
TGACATTTATATTACTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTG
GAGAAAAACGAAGATTCACCTTGCTACAACTATAAATGTCCTTTCGGTCA
ACGTTGCGTCATCATCAATAATCAACCTATTTGCAAGTGCAATCACAACT
GTGATAAATCAGAGAAAACTGGACCAGTTTGTACGAAGAGTGGTCGCACT
TATCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAGAGAGGCGATTA
CATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGcCGTCCGTTGTT
ATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTAAACAATGGAAAGAA
CACGGGGCATGTACCAAACACACCAATTTAATGAAACGGTTCTGTAGAGC
AACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCTGCTTGCATGGAAT
CCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGA
AATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCTTGTGCCCATTCTT
CCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaatgaagaaatttt
gtccTTACACATGTCGATATTGCGTACCTGAAGGCAACGAGCGTGTGGAG
ATTCTAACTGAAGACAACTTGTAAatGTATAAGATATTGACATTTATATT
ACTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTGGAGAAAAACGAAG
ATTCACCTTGCTACAACTATAAATGTCCTTTCGGTCAACGTTGCGTCATC
ATCAATAATCAACCTATTTGCAAGTGCAATCACAACTGTGATAAATCAGA
GAAAACTGGACCAGTTTGTACGAAGAGTGGTCGCACTTATCCTAATTTGT
GTAAATTAAAACAAGATGAATGCAAGAGAGGCGATTACATAATGGTAGAT
CATTTCGGTGCTTGCAAAACCGGAGcCGTCCGTTGTTATGACAACAAGAA
GGAGAGTGAGCTGGGTTTGTGTAAACAATGGAAAGAACACGGGGCATGTA
CCAAACACACCAATTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATG
TGTGACGTGAAAGCATTGCCAGCTGCTTGCATGGAATCCAAGTTCGGATG
TTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGAAATAAAGGCTGTT
TTAATGGTTGCCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGT
GGTGATGAAGCCAATAAAGAAAcaatgaagaaattttgtccTTACACATG
TCGATATTGCGTACCTGAAGGCAACGAGCGTGTGGAGATTCTAACTGAAG
ACAACTTGTAAatGTATAAGATATTGACATTTATATTACTGGCTTCAGAA
ATTTGTTGTCAATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTA
CAACTATAAATGTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAAC
CTATTTGCAAGTGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCA
GTTTGTACGAAGAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACA
AGATGAATGCAAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTT
GCAAAACCGGAGcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTG
GGTTTGTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACCAA
TTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAG
CATTGCCAGCTGCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAAC
AAAATACAAGCTTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCG
AGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCA
ATAAAGAAAcaatgaagaaattttgtccTTACACATGTCGATATTGCGTA
CCTGAAGGCAACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAat
GTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTCAAT
GGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAATGT
CCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAAGTG
CAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGAAGA
GTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAG
AGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGc
CGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTAAAC
AATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAACGG
TTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCTGC
TTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTT
TAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCTTG
TGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaat
gaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCAACG
AGCGTGTGGAGATTCTAACTGAAGACAACTTGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030842	XLOC_030842	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00048488-protein	TCONS_00048488-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_143	supercontig	scaffold_143:10442..14381 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0511368	0	2.58691	2.46718	3.29753	3.04231	1.90421	2.80295	0.868824	1.4702	1.65565	2.46873	0	0	0	0	0	0	0	0	0	0	2.13057	2.1623	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003582	ShKT_dom
IPR002350	Kazal_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00048488 vs. Swiss-Prot (Human)

BLAST of TCONS_00048488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00048488 (transcript) - C. hemisphaerica