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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048488 ID=TCONS_00048488|Name=TCONS_00048488|organism=Clytia hemisphaerica|type=transcript|length=1078bp tttaaagtgatagagatgacgcgttctttagaaaagtaataagattcttt tattacatcttaacgaccaaccaaatcaaacaagagcttgtaaaaactgc AGCTTGTCCCAGAGAAACCTGGTATATAGGAGTACTGAGTCCGAGTGTTA TTATCATAAAAAATTCTTCTCAGCATTTCAGATataaaagaatcaaaaaa tatGTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTC AATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAA TGTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAA GTGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGA AGAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGC AAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGG AGcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTA AACAATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAA CGGTTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGC TGCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAG CTTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGC TTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAc aatgaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCA ACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAACAAGCGATTAT AACAAAGCATACAAAGAGACACGTTGGTTTGCTGGCTTAACCAACAATGA TTACCCGTCTACCATCTTTAAAGAGAGGTGGTTCTTCTTAAAGCAATACT TCGAAACAACCAAAactaaataaagctttttatttCAAGTGAGGGGATAT AGTGTTAATTATAAAAACTTTCTGAAAC Run BLAST on NCBI protein sequence of TCONS_00048488-protein >TCONS_00048488-protein ID=TCONS_00048488-protein|Name=TCONS_00048488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MYKILTFILLASEICCQWIPVEKNEDSPCYNYKCPFGQRCVIINNQPICK CNHNCDKSEKTGPVCTKSGRTYPNLCKLKQDECKRGDYIMVDHFGACKTG AVRCYDNKKESELGLCKQWKEHGACTKHTNLMKRFCRATCDMCDVKALPA ACMESKFGCCPGNKIQALGPRNKGCFNGCRDGRLCPFFPNFCGDEANKET MKKFCPYTCRYCVPEGNERVEILTEDNL Run BLAST on NCBI transcript from alignment at scaffold_143:10442..14381+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048488 ID=TCONS_00048488|Name=TCONS_00048488|organism=Clytia hemisphaerica|type=transcript|length=3940bp|location=Sequence derived from alignment at scaffold_143:10442..14381+ (Clytia hemisphaerica) tttaaagtgatagagatgacgcgttctttagaaaagtaataagattcttt
tattacatcttaacgaccaaccaaatcaaacaagagcttgtaaaaactgc
AGCTTGTCCCAGAGAAACCTGGTATATAGGAGTACTGAGTCCGAGTGTTA
TTATCATAAAAAATTCTTCTCAGCATTTCAGATataaaagaatcaaaaaa
tatGTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTC
AATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAA
TGTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAA
GTGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGA
AGAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGC
AAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGG
AGGTTAGaaattaaattcaattgtgCTTTAGCCTTTGACGTACCTTAGCC
TGCccttttgtgtgaaaaaaaattaaatctttatCAGCTGAGCCAAGCTG
GAGAAATTTAAGTTAGAAGTTGCCTCATATTATTCATCGTTAGTTGACTT
GGCTAGTCATCATCTTTCGGGTTAGAATTCCTCTTTTAACTTTACAAATG
ATTCATTGGTTTTAACTTCGAAAGAAAGAATGGAATTTGATGTTTCTTGA
TGCTTTTCCTACCTATGATGTGAAATGTCATCAAAAAGGATTATAATGAA
AAGCCAAATAAGTATTAAAAACGCATTTAAAATACTGTTTACATTGAACA
TAGATAATAATCAAGGGATGATCTCCTGAAAGTGTAGTCAACACATCGGT
TGCATCGTATTACTAAGCGATGAGTTACCAAGCTCATATATGAAGAGTTT
AAGATTATaatcaacaaaagaagaaaagctTTACACCACCTTTGGTCAAA
TGATTCGAAATAGAAGGCCGAAAAAAAGCGGGATGAGGTCACAAAGAGAC
TTATAGTAACCAATTTGTTACAAGCCAAAAGATGTAGAGTTTAAGATTAG
AATTAACGAAAGAGGAACCTTTTTTTACGCCTTTTGTGTTCCACAATTTG
ATATAAAAGCCAAAATCGTAGGAAGAGTTCGAAATGAGAGGCACTGCTAA
GCGTGAAAAAGCAAGGTCATTAAAATATTGATAAGAGcacttttcatttt
gtttatttcagcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGG
GTTTGTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACCAAT
TTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGGTAAGCCTTA
CTATTTGCTTTATTCGGGAAATAGTTCatacccctatgttgaggaggtgt
gacgtacAGGGTAGTATGGAAAGTAAAAATTCCAGGGGGTCaggtttttt
gcttttttgtgtaaaaattAACAATGGTCAATAAAATGAGGTTGAAAACA
TTTTCTGGAATAACGCAATTTTTCTGATATCGTCCAaataaaaactagat
ttcaaGCAAACGAAATTTGCCGAATCATCAAATTTTTGCAACTTACTATA
cttgtcttttgtcttttttctatTCACTAGACGTGAAAGCATTGCCAGCT
GCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGC
TTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTAAGTCAGCAATATCCA
TTTCGATCCCATTAATTTCCCATAATGCTTCTTGTTCTTTTTGTGAAACC
ATAATTggcacaaaaaaaactttttagaaaagCAAATTATACCAAACTCT
TGCGTTATCTGATTTTCAGATGGGGGATTGGCGGCCGCCAAGGCAAAAGC
CCTGGTTGCCCCTGCCAATCCCCAacaacgagggctgggttatcAGGCCT
CCCGCACTGATTTataaagtccgaagggctaaATGTCATACTTTAAGCCA
TCGccggcaaaaaaagtgaatatcgcaagaaatattttttccattgtttc
cggaaatcctcgaagcttctgattggtcaagcatTGAAATTCTATTATAA
TGTCGTGTGACGTAGGTagaatttcctacctaaccacggcggcacacttt
tcagccaaagcacgacatctagcccttcgggctttctAATATGTGCCTTC
CGCTgaaaaatccttgacgcggtctcgcaaaattccgtaatgtaaacctt
ccagatgttgaaaatttccccgacattcagagctttagcgtgttggaatt
aaaatttctgcatctgagTGCCAGATAAACTCTGGCGTGGAGCCTGATGA
GTTGCACGGAAATATGTatgcaaagaaaaatattttcattcacCTTCTTG
CTTGTTTGCATACGACAGGTTGCCGAGATGGTCGCTTGTGCCCATTCTTC
CCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaatgaagaaattttg
tccTTACACATGTCGATATTGCGGTGAGTATGATAGATCCCAACTACTCT
GGAAAGAGAAAGAAAACTTACAATAATAGATAATCTATAGAGAGCCAAGA
TATTACTGAATACCCGAATGAATACCCTTGCAATGTTTTATGAATGTTCT
TAAATATTGAAGGCTTCGAAACCTCGTGTTGTTTTTGTAGAGCCAAAACA
TGCATTTGATGTCATATCGATATCAATAGCAATACCTACCATAACGATTT
AGCCCCCGGGGAGGggagggtacttaggcaaattgagggtacggtatgtg
tcgcccttaagggtaccttttgtggatttccaaagtcccgctaaaagtcg
gaaaaatcagaaaatcaaatttcagtcccaccaAGGGTCGTAGAAATAGG
AAGACTTCAACTTTTTAACCCCCGGAAAGATAAAAacttggtcaaatttg
tcccaataaggttcgtaaaatttacaaaattttcctttgttttctctttt
ttagtcccggcaagggtccaagggtcgaaagtcgggcggcaccccccgtc
agctAGCCCTAGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccc
cccccccgtcagctcacaGCCCTAGTAACCCCTCGTCTGGGGATTTATCT
AAACTGAACCCTCCACCGATCTGaacccaaaaaaattaatttctaatTCC
ATAGTACACTTTTCTTCCGGTCGTAAtggaaatttcttcctttgttATAG
TACCTGAAGGCAACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAA
ACAAGCGATTATAACAAAGCATACAAAGAGACACGTTGGTTTGCTGGCTT
AACCAACAATGATTACCCGTCTACCATCTTTAAAGAGAGGTGGTTCTTCT
TAAAGCAATACTTCGAAACAACCAAAactaaataaagctttttatttCAA
GTGAGGGGATATAGTGTTAATTATAAAAACTTTCTGAAAC Coding sequence (CDS) from alignment at scaffold_143:10442..14381+ >TCONS_00048488 ID=TCONS_00048488|Name=TCONS_00048488|organism=Clytia hemisphaerica|type=CDS|length=3435bp|location=Sequence derived from alignment at scaffold_143:10442..14381+ (Clytia hemisphaerica) atGTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTCA ATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAAT GTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAAG TGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGAA GAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGCA AGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGA GcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTAA ACAATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAAC GGTTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCT GCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGC TTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCT TGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAca atgaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCAA CGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAatGTATAAGATAT TGACATTTATATTACTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTG GAGAAAAACGAAGATTCACCTTGCTACAACTATAAATGTCCTTTCGGTCA ACGTTGCGTCATCATCAATAATCAACCTATTTGCAAGTGCAATCACAACT GTGATAAATCAGAGAAAACTGGACCAGTTTGTACGAAGAGTGGTCGCACT TATCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAGAGAGGCGATTA CATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGcCGTCCGTTGTT ATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTAAACAATGGAAAGAA CACGGGGCATGTACCAAACACACCAATTTAATGAAACGGTTCTGTAGAGC AACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCTGCTTGCATGGAAT CCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGA AATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCTTGTGCCCATTCTT CCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaatgaagaaatttt gtccTTACACATGTCGATATTGCGTACCTGAAGGCAACGAGCGTGTGGAG ATTCTAACTGAAGACAACTTGTAAatGTATAAGATATTGACATTTATATT ACTGGCTTCAGAAATTTGTTGTCAATGGATACCAGTGGAGAAAAACGAAG ATTCACCTTGCTACAACTATAAATGTCCTTTCGGTCAACGTTGCGTCATC ATCAATAATCAACCTATTTGCAAGTGCAATCACAACTGTGATAAATCAGA GAAAACTGGACCAGTTTGTACGAAGAGTGGTCGCACTTATCCTAATTTGT GTAAATTAAAACAAGATGAATGCAAGAGAGGCGATTACATAATGGTAGAT CATTTCGGTGCTTGCAAAACCGGAGcCGTCCGTTGTTATGACAACAAGAA GGAGAGTGAGCTGGGTTTGTGTAAACAATGGAAAGAACACGGGGCATGTA CCAAACACACCAATTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATG TGTGACGTGAAAGCATTGCCAGCTGCTTGCATGGAATCCAAGTTCGGATG TTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGAAATAAAGGCTGTT TTAATGGTTGCCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGT GGTGATGAAGCCAATAAAGAAAcaatgaagaaattttgtccTTACACATG TCGATATTGCGTACCTGAAGGCAACGAGCGTGTGGAGATTCTAACTGAAG ACAACTTGTAAatGTATAAGATATTGACATTTATATTACTGGCTTCAGAA ATTTGTTGTCAATGGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTA CAACTATAAATGTCCTTTCGGTCAACGTTGCGTCATCATCAATAATCAAC CTATTTGCAAGTGCAATCACAACTGTGATAAATCAGAGAAAACTGGACCA GTTTGTACGAAGAGTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACA AGATGAATGCAAGAGAGGCGATTACATAATGGTAGATCATTTCGGTGCTT GCAAAACCGGAGcCGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTG GGTTTGTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACCAA TTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAG CATTGCCAGCTGCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAAC AAAATACAAGCTTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCG AGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCA ATAAAGAAAcaatgaagaaattttgtccTTACACATGTCGATATTGCGTA CCTGAAGGCAACGAGCGTGTGGAGATTCTAACTGAAGACAACTTGTAAat GTATAAGATATTGACATTTATATTACTGGCTTCAGAAATTTGTTGTCAAT GGATACCAGTGGAGAAAAACGAAGATTCACCTTGCTACAACTATAAATGT CCTTTCGGTCAACGTTGCGTCATCATCAATAATCAACCTATTTGCAAGTG CAATCACAACTGTGATAAATCAGAGAAAACTGGACCAGTTTGTACGAAGA GTGGTCGCACTTATCCTAATTTGTGTAAATTAAAACAAGATGAATGCAAG AGAGGCGATTACATAATGGTAGATCATTTCGGTGCTTGCAAAACCGGAGc CGTCCGTTGTTATGACAACAAGAAGGAGAGTGAGCTGGGTTTGTGTAAAC AATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAACGG TTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCTGC TTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTT TAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCTTG TGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaat gaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCAACG AGCGTGTGGAGATTCTAACTGAAGACAACTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00048488-exon-scaffold_143-1491911889:10442..10943 | TCONS_00048488-exon-scaffold_143-1491911889:10442..10943 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1510915933:10442..10943 | TCONS_00048488-exon-scaffold_143-1510915933:10442..10943 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1575043694:10442..10943 | TCONS_00048488-exon-scaffold_143-1575043694:10442..10943 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1491911889:11703..11831 | TCONS_00048488-exon-scaffold_143-1491911889:11703..11831 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1510915933:11703..11831 | TCONS_00048488-exon-scaffold_143-1510915933:11703..11831 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1575043694:11703..11831 | TCONS_00048488-exon-scaffold_143-1575043694:11703..11831 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1491911889:12122..12223 | TCONS_00048488-exon-scaffold_143-1491911889:12122..12223 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1510915933:12122..12223 | TCONS_00048488-exon-scaffold_143-1510915933:12122..12223 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1575043694:12122..12223 | TCONS_00048488-exon-scaffold_143-1575043694:12122..12223 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1491911889:12910..13014 | TCONS_00048488-exon-scaffold_143-1491911889:12910..13014 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1510915933:12910..13014 | TCONS_00048488-exon-scaffold_143-1510915933:12910..13014 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1575043694:12910..13014 | TCONS_00048488-exon-scaffold_143-1575043694:12910..13014 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1491911889:14142..14381 | TCONS_00048488-exon-scaffold_143-1491911889:14142..14381 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1510915933:14142..14381 | TCONS_00048488-exon-scaffold_143-1510915933:14142..14381 | Clytia hemisphaerica | exon |
TCONS_00048488-exon-scaffold_143-1575043694:14142..14381 | TCONS_00048488-exon-scaffold_143-1575043694:14142..14381 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_143 | supercontig | scaffold_143:10442..14381 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|