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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048630 ID=TCONS_00048630|Name=TCONS_00048630|organism=Clytia hemisphaerica|type=transcript|length=2772bpRun BLAST on NCBI protein sequence of TCONS_00048630-protein >TCONS_00048630-protein ID=TCONS_00048630-protein|Name=TCONS_00048630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp MPKQVLETDIEKATSEYNVSEDWQVFMDICDRIKTMPNGPKDSLKCIMKRRun BLAST on NCBI transcript from alignment at scaffold_145:169319..182591+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048630 ID=TCONS_00048630|Name=TCONS_00048630|organism=Clytia hemisphaerica|type=transcript|length=13273bp|location=Sequence derived from alignment at scaffold_145:169319..182591+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_145:169319..182591+ >TCONS_00048630 ID=TCONS_00048630|Name=TCONS_00048630|organism=Clytia hemisphaerica|type=CDS|length=30243bp|location=Sequence derived from alignment at scaffold_145:169319..182591+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048630 vs. Swiss-Prot (Human)
Match: STAM1 (Signal transducing adapter molecule 1 OS=Homo sapiens GN=STAM PE=1 SV=3) HSP 1 Score: 311.612 bits (797), Expect = 2.034e-94 Identity = 170/394 (43.15%), Postives = 240/394 (60.91%), Query Frame = 2
Query: 206 DIEKATSEYNVSEDWQVFMDICDRIKTMPNGPKDSLKCIMKRVNHQIPHVALQALTLLQTCVSNCGKQFMLEVSSRDWCNNAKNVITRGHEKVSQRLREMIKKWAEDEFKEDPQLALIGQFYKRLKQDGYGFEFGATDKPNSTLAASLVQTPKPRSEDDVSFKEDLELAIAMSLQTADTNQGQKTXXXXXXXXXXXXXLYPTFSAPQLSYEETELFQVRALYDFEAAEDNEMTFKTGEIFAVLDNSDENWWKGKNHLGVGLFPANFVTSDLT--PPESKSEKK-VRFSDXXXXXXXXXXXXXXXXXXXXXLIVKRKTVIDENHLDSTLSMLKNASPNEVGDEEENIASMEDTCKEMGPLIEKKILETDRRKDDLGDLNDKFLQALQMYQQLMKE 1378
D+EKATSE N +EDW + +DICD++ GPKD L+ IM+RVNH+ PHVA+QALTLL CVSNCGK F LEV SRD+ + NV+ +GH KV ++L+ ++ +W DEFK DPQL+LI K LK+ G F + A+ + P + + +EDL AI +SL+ Q Q++ S+LYP+ S+ L+ + E +VRA+YDFEAAEDNE+TFK GEI VLD+SD NWWKG+ H G+GLFP+NFVT+DLT P K+EKK V+FSD + + IDE+ +D L ML++ P++ + + +E C +MGPLI++K+ + DR+ +L +LN K ++AL +Y +LM E
Sbjct: 12 DVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT-DEFKNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAIELSLK----EQRQQS--------TTLSTLYPSTSS-LLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPE--------------PEPAFIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNE 377 The following BLAST results are available for this feature:
BLAST of TCONS_00048630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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