TCONS_00048923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048923
Unique NameTCONS_00048923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048923 ID=TCONS_00048923|Name=TCONS_00048923|organism=Clytia hemisphaerica|type=transcript|length=2475bp
acctTTGGACCTTCCTTGTTCCACATTCCTGCAAACCAAAGTCTGAGAAA
AAGCTCGAGACCTGCTCTATAAAATTTGATCATTACAAATCAACAAGAGC
AGCAAACTGGTAGATGAGTTCTTGtcattgcaattataatttacaAACAA
AATTCATCCGACACGTGCGACGAAATTCGAGAATGTATCACTTAGCAAGC
TGCTTGGCAGCAGCTGCCAtcggacaaaaatattttgatcttcCATGGTT
AACTGCATTAGCCGGCGGTGCTGCCGCATATATTCTCACTGGAGGTTGGA
AATGGGTACGCTTGTTTTATCTGACTATCGGTAGAGATCTGCAACTTGGA
AAAGTATTCATTGGTGTAGAAATGTTTATCCGAAATCTATCCAAGAAAAA
CATGGTCGTAGCTGATGTCTTCTCCGAAACTGCAAAGAAATTTCCCAACA
AACCAGCATTCGTTTCAGTTGATACAGGAGCCTCCATGACCTACCAGGAA
GCAGAAGAATTCAGTAACAAGATTGCAAACATTTTCCAAGAAGCTGGCTA
TAAGAAGGGTGATGTAGTTGCTTTATTGATGGAGAATTGCATCGAATACA
TCCCGATTTGGATCGGATTGACTAGAATTGGTGTCACTGTATCTCTTTTG
AATTACAACGTCAAAGGGGAAGGCTTAAAACACTGTATCACAGTGGCTGA
TTGTAAAGCTGTTATCTATAGCCCAACACTTGAAGGCTCTTTGAAGGACA
TCGAATCTTCTTTGGGAAACATGAAATACTACATGTTTGCAGATAGTGCT
GGTGAACTAGATCGAGCACAAAGTTTGAAGAAGTTGATGAATTCTGCATC
TTCTTACGCTCCAAGCAGACATGCACCACTCTCAATCACCGATAAAATGT
TGTTCATCTACACATCGGGTACCACTGGATTACCTAAAGCTGCTGTAATC
CGAGGTACAAGATTCACATTCATGAGCTATGCGGTCGCTCATGCTATCGG
AGCGAAAGCGGACGATGTTCTTTACAATACTTTACCACTTTATCACAGCA
ATGGCGGTATTGGGCTAGCTGGCCAAATCCTTTACACTGGCAGTACTTTG
GTTATCCGTAAGAAGTTTTCAGCAAGTCGATTCTTTGAAGATTGTTATAA
ACACGATGCGACTATCGTCAATTACATTGGAGAGACATGCCGGTATCTTC
TATCCACGCCACCAGGAGAATTCGACCGCAAACACAAAGTTCGAATTGCT
ACAGGAAACGGCCTACGACCTTCCATTTGGGACGACTTCAAAGATCGCTT
CAACATTGGTATGATTGCGGAATTTTATGGTGCCACGGAGGGCAATGCAA
ACATGATCAATAACACTGGCAAAAGTGGAGCTGTTGGATATAATTCTGTT
CTCTTCCCTTTCGTTTACCCAATCAAGATTGTCCGTATCGATAAAGAAAC
TGGTGCTTTACTTCGAGGACCAGACGGTTTGGCCATTCCATGTGGGCCAG
GAGAGGTAGGGGAACTAGTGGGTAAAGTAAAAACAGACGCCATACATCAA
TTCGATGGATATGTTAACCAAACCGCCACTAAGAAAAAGATCGCGTACGA
CGTCTTCAAGAAAGGAGATTCAGCTTTCATGACCGGAGATGTTTTGTACC
AAGATGAATTGGGATATTATTTCTTCCAGGATCGTATGGGAGATACCTTT
AGATGGAAAGGAGAGAACGTGTCCACCAATGAAGTTGAAGGAGTGATCAG
TAAAGCATTGGAATTGAGCGATGTTTGCGTTTACGGTGTCGACGTTGATG
GTGTGGAAGGAAAAGCTGGTATGGTCATCATGTCCGACCCTGAACGAAAG
GTCAAGATCGAAGATGTGTACCGCCTTATAAGTCGTTCATTACCTGCTTA
CGCATGCCCCATTTTCCTTCGTATCACGACTGGCGACCTGGAGAAAACGT
CAACGTACAAATACAAGAAAGTGAAATTACGCGAGCAATTTTATGATCCC
TCGTTGTGTGGAAGCGATGAATTGTTTTATTTCAATGGAAAGGAAAAGAC
ATTCTTACCCATCACTTCCGATGCTTTTGCCCAAattaaaaatcgggaaa
ttcgATTTTAGGTCTTTTTTTATCCGCGATAGTTTTTTTACATGTTGTGC
AGTAAAgggatttttttatcaattgcATTTTTGTTAAcctttgttatatt
tttttgtatttagtATTTTATATCACCATGTTAATCCTGGAAAATTCATG
AATATCACCGTTAACTCAAGTTTTGGTTTGAAATACTGTTAATTAAAAAA
TGTAGTAAATGACCAGTTTGCAATGATTATTTAATTCTTTTGAAAGTGGA
ACATACACAATCGGTGATATTCAaggattaaaattttttttttgaataca
tcttttcgaccgtagccgccggttgccgcgcgggcatttttttgtccacc
ctaaaaccgtcccagtcttttttcg
Run BLAST on NCBI

protein sequence of TCONS_00048923-protein

>TCONS_00048923-protein ID=TCONS_00048923-protein|Name=TCONS_00048923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
MSSCHCNYNLQTKFIRHVRRNSRMYHLASCLAAAAIGQKYFDLPWLTALA
GGAAAYILTGGWKWVRLFYLTIGRDLQLGKVFIGVEMFIRNLSKKNMVVA
DVFSETAKKFPNKPAFVSVDTGASMTYQEAEEFSNKIANIFQEAGYKKGD
VVALLMENCIEYIPIWIGLTRIGVTVSLLNYNVKGEGLKHCITVADCKAV
IYSPTLEGSLKDIESSLGNMKYYMFADSAGELDRAQSLKKLMNSASSYAP
SRHAPLSITDKMLFIYTSGTTGLPKAAVIRGTRFTFMSYAVAHAIGAKAD
DVLYNTLPLYHSNGGIGLAGQILYTGSTLVIRKKFSASRFFEDCYKHDAT
IVNYIGETCRYLLSTPPGEFDRKHKVRIATGNGLRPSIWDDFKDRFNIGM
IAEFYGATEGNANMINNTGKSGAVGYNSVLFPFVYPIKIVRIDKETGALL
RGPDGLAIPCGPGEVGELVGKVKTDAIHQFDGYVNQTATKKKIAYDVFKK
GDSAFMTGDVLYQDELGYYFFQDRMGDTFRWKGENVSTNEVEGVISKALE
LSDVCVYGVDVDGVEGKAGMVIMSDPERKVKIEDVYRLISRSLPAYACPI
FLRITTGDLEKTSTYKYKKVKLREQFYDPSLCGSDELFYFNGKEKTFLPI
TSDAFAQIKNREIRF
Run BLAST on NCBI

transcript from alignment at scaffold_148:196706..205915-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048923 ID=TCONS_00048923|Name=TCONS_00048923|organism=Clytia hemisphaerica|type=transcript|length=9210bp|location=Sequence derived from alignment at scaffold_148:196706..205915- (Clytia hemisphaerica)
ACCTTTGGACCTTCCTTGTTCCACATTCCTGCAAACCAAAGTCTGAGAAA
AAGCTCGAGACCTGCTCTATAAAATTTGATCATTACAAATCAACAAGAGC
AGCAAACTGGTAAGAGTAGCATTATTAGCCTGTTAGCATATTAGTAGCAT
ATTTACATTTAAGATTATCTTTTCTGATTATATTATAATTTCAAGCACCT
TCCAGATGAGTGACAATTTTGCAAACTTGACTGCTTTGACTGACACACAC
CCCTTTTTCTTTTTTTATAAACCAGGAGACTCACCCACTTGATACGATCA
ATAACTTTTTCCAATTTATGACTAAACAATAATCAATCGATTGTTTAGAT
ATCAATTGATTCCGATAATCGATAGGTATTCAAGACAATATCTAAATTTT
TTGGATCAATTGGCTATTTGCTCTCTACTGGCTTTATTATCGAGTATGAT
TATAGTCCTTCATCTTTTTTAGAGTCGATCTATACCTAGTCAATTGAGCT
TCCCTTATAAAAATCCCGATTATATTGTCTATTAATTACAGGACCCTGCC
GACGCACCGGACTGTCCGGTGTATTTGTCCGGTGGCAGAAAGTATCCTTT
CGCTACACCGGACGCAATAAGTCCGACGTCAGTCCGGTGTTGCATACGGG
GAATTCTGGCCGCTGGACATTTATGTTTTGATTGTCCGGTGGAAAAAAGT
ATCCTTCTAAGACACCGGACAACCGACTTCCTTTAGTAGCCTTTAGTCCG
GTGTAGAGATGGTCCGGTGGTAAAAAAATTCTCATTTTACACCGGACTTT
CGCGTGTCCGGTGTTCGTTAAGTCCGGTGCGTCGGCAGGGTCCTTTAATT
ATCAGAATCAATCCAAATCTTATTCATCGATTAGTTATCAATTGGTTATT
GAAGGACCCTGCCGACGCCAGACCAGATGGCTCAGATCAGTTATATACAG
ATTTACCTACATAGCAATAGTTTCAATATTCCTCTGATGTTTCTATTTTT
CCAAAAACGAAAACTTTTCTTCTATCTTACACCCCTGCCTCAGGCAGTTA
GACACACTAGCGTCCCGCCGAAATGCGTATCAAAGATTAATGCTGCGAAA
GCGCTATATCGTTTACCTGACTCTTAAGCAAAAAAATGTGTCACAAAAAT
TCTAAAGGGATTCATGAAAAAATAACACGGCGCTTTTTAATGAAATTAAC
ATTCTCAAAAACTATGAGAAATTGCTTAAAATTTGAGAACTAATTTGAAG
ATCAACTTCCCAAGAAAAAGATCTACGGGGGAGACGGAACCCACCTAGCT
AAATCCGCGCACTGCCCGATAGGCTATTTCCTGGAAATTTTGCCGGACCT
CAAACACTGACCCATTCACATGTGCAAAATTGTTTTTACTTAGCGTTTAA
ACAAGGCCTTAAAATTCAAAGCGCTGTCTAATTTTGGTTGGTGGATTTTG
GCTGTGGCACGTTTTATATTGTTTCAAACCTTCAAGTTTTAATTAATTGT
TTTGCAAACTTGATTCAGGTAACTCTCATCCTTGTTGTTGCAAATACATC
CTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTTGATTTCCTAGTGTGA
CTAACTGTCAGGTACAACTACAGTGCATTTTACCCAATGTTTCTGACCCT
TGCAGTTGTAGTGTAGTTTGATATCAAATCTTATTTTTTTGAGGGCACCT
GAAAATGAGCCCAAGATGTCGACACAGTGTTCAAAACAAATCAAAATGAG
TGCAACTGAAAACTACCTTAAATGGTATTAAATTTCGCGTGTTACAAATT
TTTTACGTGTATTGAATTTCGCAATACAGTAGTCAATTTCTGGAAATTTT
CATGTGTATTAAATTTCCCGATTCACTACATTGGGCATTTTCAAGAAGTA
GGAATAAAGAAAGATGACTAATTTTGCTTAAAAAACATATTGGGTGTAAA
CATATCAAAGATAGTAACAAAACTAGTGACAAAAATAGTAACCAACAAAA
AAATTCGCCATTTTCTGTCTATTTAAAAAGTTTTAGCGTGTATTTAATTT
CGCGATGTTGAAATTTTGAAAAATTTAAACGACAGAATTAAATTTCACGA
AATTTGACCTAAAAAATTGCAAAATAAAGTACCCGCAAAATTAATGATTA
AGGTATAAAGATACATCAGATTTTTACTGTCAGACTTCGAATTCAGCAGT
CTTAAAAACACCCTTAAAGTGTATCCAGCTAAAAAAAAGTGCATCTCAAG
GGTCTCAAAAAACCTACTCTTAAGGGTGGCACATGCCGTTTGTCAGATCA
TGAGTGCCCTCCTCCCCAGGTGAGGCTTTCAGCAAAACTAACAAAAGAGA
AATAGAATTTCTATTCTTCTGCAAGTAGCACAATTCTTTTCTGACTATAG
TTTTTTGCTCAACCTCTATAATCTCTTGTACTTTCTGGTACTTTCCAAGG
AAAATCAACCAATATAATACATCCCAAAATCAATCAATCAATACAACCAA
TCCAATTTCTTGTATTTTCCAAGGAAAATTGCTTATAAAAGATAATGTTC
CAAGAGATTAACTAAATTATTTCTCCAGTTTTCTAACTAATTTCTCCAGC
ATAAATTTTTCTAATGGCACTTTTGATTCTTTCAAAAAGATTCTACCATT
CTTTGCCTTTTTTAAGACAGTGATTTTTATAGAAAAGTATCAGAAATTTG
CTTGTAGATAATTTTCTTAAAAAATTTGAATTATGTTAATATTTTTTCCC
TTGAAAAATACAACAAATTGTATTGGTTGACTTCCTTGAAAAGTACAAGA
ATTTGCTTGTAGGTTGGGATCATGTGCAGTTTACGGTGCCCATGGTCAAA
TTGTTGTCCAGTGGGTTTCACTAGTCCAGTTGTAATCAACATCTGTAATT
TTTGAGGGACTTCTATTTCTGAAGATTTGTGAGAAATAACTTTGGTACAC
AATTATATTAAATATGATCTCTCGCTTACCAGGCTCCTTTTGTTGAGCGC
TATCTAATACTTTTACGTGTAAAAATGAAATACAGGATTGCTAATATTTC
TCATGTTAATGATAAAAAATATATCATTACTCATTTTCCTTGAAAAATAC
AAGGGTTTCCTTTAGCAGGTTGTTTCCCTTGCCCCAAATACAAGAATTGT
GTTTATCTAATTTTCCTTGGAAAATACAAGAAATTGTTTACAGTTGATTT
TCCTTAAAAGTATAATGCATTTTCTTTGCTTAGTTTTTCTTGGAAAATAC
AGGAAAATATTTTAATTTATGTAACTTTCAATGGGTTGTTCCATAATATT
TCCTTACAGAGAGGTGGAAGAACCTTTTCAAGTCAAAACAATTCTTAAAA
ATGACAAAATTTATTGCAAAAGACCCTTGGAAAAAATTATTTTCATGTCT
TTAAGTGAGGGTGGGCGAACTAAAATCAGTCGTTCACCCCCCCTTGGAAA
TTTTTAAGAAACACTTCTTTTGACTCCCTGGAAATTCTTCTTGGATTACC
CACTGGAAATGTTCGTCCACCCCCCTGAATGGTTATAAAATGGAATGGGT
CAATATAACCAGAAAATATTATTGTTCATTTCCCTTGACAAATACAAGAA
TTTGCTTTAGGTTGTTTCCCTTGCCAAATACAAGAAATGTGATGTGTGTA
ATCTAATTTCACTTGGAAAATACAACAAATTGTTTACGCTAATTATTAAA
AGTTATTAATACTATTAATAGCAATGCCCACCATCAAGTGCGTTCCAATT
TTCAATGAAATTGATTTTTGAAGCCGGAACTATTCAAAAATCGCTGGAAC
AACCTATTTTCGCCGGAAAGACAGTATTTCTTGAATTTCTCGAGCTGTAC
TTTATATTTTTTTATGAAATTTTGCACACTGATGCAAAATGACAATACCT
AAAATGAAACGGAGCCAGATTTTCGAAAAACATTTTTTTCAGGCTGCCGG
AAAAACTGTTTTTTTTGGCATTTTCTCGAGATTTTATCATTAGTATTTTC
TGATTTTTTGCAGAAAGATGCGTATTCGCAATACTCAAAATATGGCTGAA
TCCGATTTTTGAGAACTTTTTTTTTTAAATCGCCGTTTTTCTGGATTTTA
TTGGACTTTTTCTTTACAATTGGTTGTTTTTTTCATTCAAAAAATTATTA
ATAGTAATATGCCCACCATCAAGTATGTTCCAATTTTCAATGAAATTGAT
TTTTGAAGCCGGAACTATTCAAAAATCGCCGGAACGACCTATTTTCGCCG
GAAAGACAGTATTTCATGAATTTCTCGAACTGTACTTTATATTTTTTTAT
GAAATTTTGCACACTGATGATAAATGACAATGAAATACCTAAAATGTGAC
CGAGCCCGATTTTTGAAAAACATTTTTTTCCGGCCAAAAATGCTGGAAAT
ATGCTGGACATTTTCTCAAATTTTCATCCTTATTTTTCTCTGATTTTTTG
CAGAATGATGCGTATTCACAATGCTCAAAACATGACCGAGTTCGATTTTT
GAGAAAAATTTTTTTTCCGGTTAAAAAAGCCGGAAATTTCTGTTTTTGCA
GATTTTCATTGGATTTTTTTCGTTTAATGTCTTTGTTTTTTTCAAACAAA
AACATGATTTATAAGAATTTCCACGATTAAGCATGGTTCAATTTTCAATG
AAACTGATTTTGGTACAGGAACTTTCTAAAAATTGACAGAACAGCCGAAT
TCCATGAATTTCTCGAGTTGTTCTTGTATTATTCTGCATTTTCATACTAT
TGTTCTCATTTTTCAATTGTCTTATTACATCAATCTTCAGGTAGGTCCAT
TCAGCATGTAGCTTGTTAAATTTGTCATTCTTTTTATCTCTTTTAAGTAA
ATGCGGGATTCTTATTAAGATTCACTCCCTCTCTACTTTAGAGGAATAAT
TGAGTTGGTTTGCAAGCAGAAAATTATGAAAGAATCTCTATTTTGAATGC
ATTTATGGCTTTTGAGTAACAACATTACTTAATAGAGATACTACTTATTG
CCCTTGTATCATTTGTAATTTGAGACCAAAATAAAGTAAGACATAACTTA
GTTAATCACAATCCTTTATTACTTAAGTCTTAAAAATTATTTAAAATCTT
TTTACTTTAATGATAATCTGCTCAGATAAATGCTTAATATTAATGATTTG
TCTCTAATTTTTCCAATAGTTACTATTGAAACATATCTAAGTTTGTCCTA
AAATTCGTTTTAAGGAGCTACTTTATGTTTTATAGTGAGTTAATAGTTTA
GAATGAATGAACTCCTCAAACATTAACCAAGGATACTTCAATGTTGTGCA
TATTTCCTATAGTATTCAACCAATGGCGAAACCCTATTCATGATTTTGTA
CCATTCTAAAATCACTGTTCCAGGTATTGGAGACTCTTATAAGTTAAAAG
ATAGGTCCAGTGGAGGAGGGGTAGGATTTGTAGAAAATCNTCCAGGTATT
GGAGACTCTAAGTTAAAAGATAGGTCCAGTGGAGGAGGGGTAGGATTTGT
AGGAAATCAGCTCGTATACTTGTGTTTATCAAGTCCAAAGATATACATCT
CCTGTATTTTTTGTGTGAAGGATTAGAGCCTGACTGTTAAACAATACAGT
CCTGTATTTCTGAAGGACTATATTCTTGCCTTTTAGAAACTAAATATTCC
AGGAAAGAAAATGGTTTGAGCTTTAGAACTTTGGAAAATAGAAAATTTCT
AATAAGCTTATTTATCAGTCAAAATTTTCTGATATATCGTGCTTGAAAGA
GAGTTGTTCTATTTCGAAGTCATGTTTTTTTCAAGTTATTTTCTGTGTTT
TATATCCACAGGTAGATGAGTTCTTGTCATTGCAATTATAATTTACAAAC
AAAATTCATCCGACACGTGCGACGAAATTCGAGAATGTATCACTTAGCAA
GCTGCTTGGCAGCAGCTGCCATCGGACAAAAATATTTTGATCTTCCATGG
TTAACTGCATTAGCCGGCGGTGCTGCCGCATATATTCTCACTGGAGGTTG
GAAATGGGTACGCTTGTTTTATCTGACTATCGGTAGAGATCTGCAACTTG
GAAAAGTATTCATTGGTGTAGAAATGTTTATCCGAAATCTATCCAAGAAA
AACATGGTCGTAGCTGATGTCTTCTCCGAAACTGCAAAGAAATTTCCCAA
CAAACCAGCATTCGTTTCAGTTGATACAGGAGCCTCCATGACCTACCAGG
AAGCAGAAGAATTCAGTAACAAGATTGCAAACATTTTCCAAGAAGCTGGC
TATAAGAAGGGTGATGTAGTTGCTTTATTGATGGAGAATTGCATCGAATA
CATCCCGATTTGGATCGGATTGACTAGAATTGGTGTCACTGTATCTCTTT
TGAATTACAACGTCAAAGGGGAAGGCTTAAAACACTGTATCACAGTGGCT
GATTGTAAAGCTGTTATCTATAGCCCAACACTTGAAGGCTCTTTGAAGGA
CATCGAATCTTCTTTGGGAAACATGAAATACTACATGTTTGCAGATAGTG
CTGGTGAACTAGATCGAGCACAAAGTTTGAAGAAGTTGATGAATTCTGCA
TCTTCTTACGCTCCAAGCAGACATGCACCACTCTCAATCACCGATAAAAT
GTTGTTCATCTACACATCGGGTACCACTGGATTACCTAAAGCTGCTGTAA
TCCGAGGTACAAGATTCACATTCATGAGCTATGCGGTCGCTCATGCTATC
GGAGCGAAAGCGGACGATGTTCTTTACAATACTTTACCACTTTATCACAG
CAATGGCGGTATTGGGCTAGCTGGCCAAATCCTTTACACTGGCAGTACTT
TGGTTATCCGTAAGAAGTTTTCAGCAAGTCGATTCTTTGAAGATTGTTAT
AAACACGATGCGACTATCGTCAATTACATTGGAGAGACATGCCGGTATCT
TCTATCCACGCCACCAGGAGAATTCGACCGCAAACACAAAGTTCGAATTG
CTACAGGAAACGGCCTACGACCTTCCATTTGGGACGACTTCAAAGATCGC
TTCAACATTGGTATGATTGCGGAATTTTATGGTGCCACGGAGGGCAATGC
AAACATGATCAATAACACTGGCAAAAGTGGAGCTGTTGGATATAATTCTG
TTCTCTTCCCTTTCGTTTACCCAATCAAGATTGTCCGTATCGATAAAGAA
ACTGGTATGAAGATTTTTTAAATTAACGCCGGACTAATTACAGAAATTCA
AAACACAATTGCAATGTTGCTTTTGTCACTTAAATCTTTTAGTCTTCAAC
TTCAACTTTTCAATCAGATTTTCTTCTCCATTTCGGATACCTGATTATTT
TCTTATGACCTTCTTCTTAACTCTTATCAGGTGCTTTACTTCGAGGACCA
GACGGTTTGGCCATTCCATGTGGGCCAGGAGAGGTAGGGGAACTAGTGGG
TAAAGTAAAAACAGACGCCATACATCAATTCGATGGATATGTTAACCAAA
CCGCCACTAAGAAAAAGATCGCGTACGACGTCTTCAAGAAAGGAGATTCA
GCTTTCATGACCGGAGATGTTTTGTACCAAGATGAATTGGGATATTATTT
CTTCCAGGATCGTATGGGAGATACCTTTAGGTTAGTAGCACTCTTCTCTT
TTACACTAAAGATCATGTACCTAGCAACCTCTTTATTTATCTTTATCTAC
ATTGAATCAACTATTAACAAGTCGACTTTAAGCCGAAAATTTCGCCTATT
ATGTGAAAAATAAGTTGAAGTTAAGTTAAGGTTCATAAAAATGCGAATCG
CTTTAATAACGATACAATCCGTTGAAAATGATAAAAAATTAAGAGCTTTG
GTATTTTGACTATATACTTGTATTCTTTTTATTAGAACGATGAGGCTTTA
AATTGCCAATTTCACCCTAATAATAACATGATCAGAACAATTTGAGGCTC
AAAGTGCCAAAAAAATGAGAACAGCCGAGCCTCATCAAAAACTTACTGGT
TCTTATAAAAAAAGCGTATTATAATTAGGATAAGAAGAAGAAAAATTTTA
CAATCAATATCCATTAGGTTTGTTTCAATTCAATCTTATGTTAACTTTCA
ACATGCGCGTTATCTTTTAACAGATGGAAAGGAGAGAACGTGTCCACCAA
TGAAGTTGAAGGAGTGATCAGTAAAGCATTGGAATTGAGCGATGTTTGCG
TTTACGGTGTCGACGTTGATGGTGTGGAAGGAAAAGCTGGTATGGTCATC
ATGTCCGACCCTGAACGAAAGGTAAGATACATTGAGTCTGCTTTCTCCCA
TCTGATTCTGGCTAGTCCAAGTTTTATCAGAGAAAATCGTAAAAAATTCG
AAAAAAAACAAGGTGTAAAAGAAAAGAGCTTTATGCGTTGCTATAAAGTT
TTGGAAAAATAACAAAATTACTTTCTAAAGTATTAAAGTATTAAAACATT
TTTCCAAAGATAGAAGAAAAAGCAGTGAAAGTGAGATTAATTTTAGATGA
TCGTTAACGAGGTGTAATAAAAAACCCTTTTTTCCACAAAATAAGAGCTC
ATAAAATACCATTATTCAGATGATAAGGGATGAGCTATACCAGAATCAAA
GATAGATTTCACTATCGCCCCCTTTTATGTTTCAGGTCAAGATCGAAGAT
GTGTACCGCCTTATAAGTCGTTCATTACCTGCTTACGCATGCCCCATTTT
CCTTCGTATCACGACTGGCGACCTGGAGAAAACGTCAACGTACAAATACA
AGAAAGTGAAATTACGCGAGCAATTTTATGATCCCTCGTTGTGTGGAAGC
GATGAATTGTTTTATTTCAATGGAAAGGAAAAGACATTCTTACCCATCAC
TTCCGATGCTTTTGCCCAAATTAAAAATCGGGAAATTCGATTTTAGGTCT
TTTTTTATCCGCGATAGTTTTTTTACATGTTGTGCAGTAAAGGGATTTTT
TTATCAATTGCATTTTTGTTAACCTTTGTTATATTTTTTTGTATTTAGTA
TTTTATATCACCATGTTAATCCTGGAAAATTCATGAATATCACCGTTAAC
TCAAGTTTTGGTTTGAAATACTGTTAATTAAAAAATGTAGTAAATGACCA
GTTTGCAATGATTATTTAATTCTTTTGAAAGTGGAACATACACAATCGGT
GATATTCAAGGATTAAAATTTTTTTTTTGAATACATCTTTTCGACCGTAG
CCGCCGGTTGCCGCGCGGGCATTTTTTTGTCCACCCTAAAACCGTCCCAG
TCTTTTTTCG

Coding sequence (CDS) from alignment at scaffold_148:196706..205915-

>TCONS_00048923 ID=TCONS_00048923|Name=TCONS_00048923|organism=Clytia hemisphaerica|type=CDS|length=7992bp|location=Sequence derived from alignment at scaffold_148:196706..205915- (Clytia hemisphaerica)
GTCAAGATCGAAGATGTGTACCGCCTTATAAGTCGTTCATTACCTGCTTA
CGCATGCCCCATTTTCCTTCGTATCACGACTGGCGACCTGGAGAAAACGT
CAACGTACAAATACAAGAAAGTGAAATTACGCGAGCAATTTTATGATCCC
TCGTTGTGTGGAAGCGATGAATTGTTTTATTTCAATGGAAAGGAAAAGAC
ATTCTTACCCATCACTTCCGATGCTTTTGCCCAAATTAAAAATCGGGAAA
TTCGATTTTAGATGGAAAGGAGAGAACGTGTCCACCAATGAAGTTGAAGG
AGTGATCAGTAAAGCATTGGAATTGAGCGATGTTTGCGTTTACGGTGTCG
ACGTTGATGGTGTGGAAGGAAAAGCTGGTATGGTCATCATGTCCGACCCT
GAACGAAAGGTGCTTTACTTCGAGGACCAGACGGTTTGGCCATTCCATGT
GGGCCAGGAGAGGTAGGGGAACTAGTGGGTAAAGTAAAAACAGACGCCAT
ACATCAATTCGATGGATATGTTAACCAAACCGCCACTAAGAAAAAGATCG
CGTACGACGTCTTCAAGAAAGGAGATTCAGCTTTCATGACCGGAGATGTT
TTGTACCAAGATGAATTGGGATATTATTTCTTCCAGGATCGTATGGGAGA
TACCTTTAGATGAGTTCTTGTCATTGCAATTATAATTTACAAACAAAATT
CATCCGACACGTGCGACGAAATTCGAGAATGTATCACTTAGCAAGCTGCT
TGGCAGCAGCTGCCATCGGACAAAAATATTTTGATCTTCCATGGTTAACT
GCATTAGCCGGCGGTGCTGCCGCATATATTCTCACTGGAGGTTGGAAATG
GGTACGCTTGTTTTATCTGACTATCGGTAGAGATCTGCAACTTGGAAAAG
TATTCATTGGTGTAGAAATGTTTATCCGAAATCTATCCAAGAAAAACATG
GTCGTAGCTGATGTCTTCTCCGAAACTGCAAAGAAATTTCCCAACAAACC
AGCATTCGTTTCAGTTGATACAGGAGCCTCCATGACCTACCAGGAAGCAG
AAGAATTCAGTAACAAGATTGCAAACATTTTCCAAGAAGCTGGCTATAAG
AAGGGTGATGTAGTTGCTTTATTGATGGAGAATTGCATCGAATACATCCC
GATTTGGATCGGATTGACTAGAATTGGTGTCACTGTATCTCTTTTGAATT
ACAACGTCAAAGGGGAAGGCTTAAAACACTGTATCACAGTGGCTGATTGT
AAAGCTGTTATCTATAGCCCAACACTTGAAGGCTCTTTGAAGGACATCGA
ATCTTCTTTGGGAAACATGAAATACTACATGTTTGCAGATAGTGCTGGTG
AACTAGATCGAGCACAAAGTTTGAAGAAGTTGATGAATTCTGCATCTTCT
TACGCTCCAAGCAGACATGCACCACTCTCAATCACCGATAAAATGTTGTT
CATCTACACATCGGGTACCACTGGATTACCTAAAGCTGCTGTAATCCGAG
GTACAAGATTCACATTCATGAGCTATGCGGTCGCTCATGCTATCGGAGCG
AAAGCGGACGATGTTCTTTACAATACTTTACCACTTTATCACAGCAATGG
CGGTATTGGGCTAGCTGGCCAAATCCTTTACACTGGCAGTACTTTGGTTA
TCCGTAAGAAGTTTTCAGCAAGTCGATTCTTTGAAGATTGTTATAAACAC
GATGCGACTATCGTCAATTACATTGGAGAGACATGCCGGTATCTTCTATC
CACGCCACCAGGAGAATTCGACCGCAAACACAAAGTTCGAATTGCTACAG
GAAACGGCCTACGACCTTCCATTTGGGACGACTTCAAAGATCGCTTCAAC
ATTGGTATGATTGCGGAATTTTATGGTGCCACGGAGGGCAATGCAAACAT
GATCAATAACACTGGCAAAAGTGGAGCTGTTGGATATAATTCTGTTCTCT
TCCCTTTCGTTTACCCAATCAAGATTGTCCGTATCGATAAAGAAACTGGT
CAAGATCGAAGATGTGTACCGCCTTATAAGTCGTTCATTACCTGCTTACG
CATGCCCCATTTTCCTTCGTATCACGACTGGCGACCTGGAGAAAACGTCA
ACGTACAAATACAAGAAAGTGAAATTACGCGAGCAATTTTATGATCCCTC
GTTGTGTGGAAGCGATGAATTGTTTTATTTCAATGGAAAGGAAAAGACAT
TCTTACCCATCACTTCCGATGCTTTTGCCCAAATTAAAAATCGGGAAATT
CGATTTTAGATGGAAAGGAGAGAACGTGTCCACCAATGAAGTTGAAGGAG
TGATCAGTAAAGCATTGGAATTGAGCGATGTTTGCGTTTACGGTGTCGAC
GTTGATGGTGTGGAAGGAAAAGCTGGTATGGTCATCATGTCCGACCCTGA
ACGAAAGGTGCTTTACTTCGAGGACCAGACGGTTTGGCCATTCCATGTGG
GCCAGGAGAGGTAGGGGAACTAGTGGGTAAAGTAAAAACAGACGCCATAC
ATCAATTCGATGGATATGTTAACCAAACCGCCACTAAGAAAAAGATCGCG
TACGACGTCTTCAAGAAAGGAGATTCAGCTTTCATGACCGGAGATGTTTT
GTACCAAGATGAATTGGGATATTATTTCTTCCAGGATCGTATGGGAGATA
CCTTTAGATGAGTTCTTGTCATTGCAATTATAATTTACAAACAAAATTCA
TCCGACACGTGCGACGAAATTCGAGAATGTATCACTTAGCAAGCTGCTTG
GCAGCAGCTGCCATCGGACAAAAATATTTTGATCTTCCATGGTTAACTGC
ATTAGCCGGCGGTGCTGCCGCATATATTCTCACTGGAGGTTGGAAATGGG
TACGCTTGTTTTATCTGACTATCGGTAGAGATCTGCAACTTGGAAAAGTA
TTCATTGGTGTAGAAATGTTTATCCGAAATCTATCCAAGAAAAACATGGT
CGTAGCTGATGTCTTCTCCGAAACTGCAAAGAAATTTCCCAACAAACCAG
CATTCGTTTCAGTTGATACAGGAGCCTCCATGACCTACCAGGAAGCAGAA
GAATTCAGTAACAAGATTGCAAACATTTTCCAAGAAGCTGGCTATAAGAA
GGGTGATGTAGTTGCTTTATTGATGGAGAATTGCATCGAATACATCCCGA
TTTGGATCGGATTGACTAGAATTGGTGTCACTGTATCTCTTTTGAATTAC
AACGTCAAAGGGGAAGGCTTAAAACACTGTATCACAGTGGCTGATTGTAA
AGCTGTTATCTATAGCCCAACACTTGAAGGCTCTTTGAAGGACATCGAAT
CTTCTTTGGGAAACATGAAATACTACATGTTTGCAGATAGTGCTGGTGAA
CTAGATCGAGCACAAAGTTTGAAGAAGTTGATGAATTCTGCATCTTCTTA
CGCTCCAAGCAGACATGCACCACTCTCAATCACCGATAAAATGTTGTTCA
TCTACACATCGGGTACCACTGGATTACCTAAAGCTGCTGTAATCCGAGGT
ACAAGATTCACATTCATGAGCTATGCGGTCGCTCATGCTATCGGAGCGAA
AGCGGACGATGTTCTTTACAATACTTTACCACTTTATCACAGCAATGGCG
GTATTGGGCTAGCTGGCCAAATCCTTTACACTGGCAGTACTTTGGTTATC
CGTAAGAAGTTTTCAGCAAGTCGATTCTTTGAAGATTGTTATAAACACGA
TGCGACTATCGTCAATTACATTGGAGAGACATGCCGGTATCTTCTATCCA
CGCCACCAGGAGAATTCGACCGCAAACACAAAGTTCGAATTGCTACAGGA
AACGGCCTACGACCTTCCATTTGGGACGACTTCAAAGATCGCTTCAACAT
TGGTATGATTGCGGAATTTTATGGTGCCACGGAGGGCAATGCAAACATGA
TCAATAACACTGGCAAAAGTGGAGCTGTTGGATATAATTCTGTTCTCTTC
CCTTTCGTTTACCCAATCAAGATTGTCCGTATCGATAAAGAAACTGGTCA
AGATCGAAGATGTGTACCGCCTTATAAGTCGTTCATTACCTGCTTACGCA
TGCCCCATTTTCCTTCGTATCACGACTGGCGACCTGGAGAAAACGTCAAC
GTACAAATACAAGAAAGTGAAATTACGCGAGCAATTTTATGATCCCTCGT
TGTGTGGAAGCGATGAATTGTTTTATTTCAATGGAAAGGAAAAGACATTC
TTACCCATCACTTCCGATGCTTTTGCCCAAATTAAAAATCGGGAAATTCG
ATTTTAGATGGAAAGGAGAGAACGTGTCCACCAATGAAGTTGAAGGAGTG
ATCAGTAAAGCATTGGAATTGAGCGATGTTTGCGTTTACGGTGTCGACGT
TGATGGTGTGGAAGGAAAAGCTGGTATGGTCATCATGTCCGACCCTGAAC
GAAAGGTGCTTTACTTCGAGGACCAGACGGTTTGGCCATTCCATGTGGGC
CAGGAGAGGTAGGGGAACTAGTGGGTAAAGTAAAAACAGACGCCATACAT
CAATTCGATGGATATGTTAACCAAACCGCCACTAAGAAAAAGATCGCGTA
CGACGTCTTCAAGAAAGGAGATTCAGCTTTCATGACCGGAGATGTTTTGT
ACCAAGATGAATTGGGATATTATTTCTTCCAGGATCGTATGGGAGATACC
TTTAGATGAGTTCTTGTCATTGCAATTATAATTTACAAACAAAATTCATC
CGACACGTGCGACGAAATTCGAGAATGTATCACTTAGCAAGCTGCTTGGC
AGCAGCTGCCATCGGACAAAAATATTTTGATCTTCCATGGTTAACTGCAT
TAGCCGGCGGTGCTGCCGCATATATTCTCACTGGAGGTTGGAAATGGGTA
CGCTTGTTTTATCTGACTATCGGTAGAGATCTGCAACTTGGAAAAGTATT
CATTGGTGTAGAAATGTTTATCCGAAATCTATCCAAGAAAAACATGGTCG
TAGCTGATGTCTTCTCCGAAACTGCAAAGAAATTTCCCAACAAACCAGCA
TTCGTTTCAGTTGATACAGGAGCCTCCATGACCTACCAGGAAGCAGAAGA
ATTCAGTAACAAGATTGCAAACATTTTCCAAGAAGCTGGCTATAAGAAGG
GTGATGTAGTTGCTTTATTGATGGAGAATTGCATCGAATACATCCCGATT
TGGATCGGATTGACTAGAATTGGTGTCACTGTATCTCTTTTGAATTACAA
CGTCAAAGGGGAAGGCTTAAAACACTGTATCACAGTGGCTGATTGTAAAG
CTGTTATCTATAGCCCAACACTTGAAGGCTCTTTGAAGGACATCGAATCT
TCTTTGGGAAACATGAAATACTACATGTTTGCAGATAGTGCTGGTGAACT
AGATCGAGCACAAAGTTTGAAGAAGTTGATGAATTCTGCATCTTCTTACG
CTCCAAGCAGACATGCACCACTCTCAATCACCGATAAAATGTTGTTCATC
TACACATCGGGTACCACTGGATTACCTAAAGCTGCTGTAATCCGAGGTAC
AAGATTCACATTCATGAGCTATGCGGTCGCTCATGCTATCGGAGCGAAAG
CGGACGATGTTCTTTACAATACTTTACCACTTTATCACAGCAATGGCGGT
ATTGGGCTAGCTGGCCAAATCCTTTACACTGGCAGTACTTTGGTTATCCG
TAAGAAGTTTTCAGCAAGTCGATTCTTTGAAGATTGTTATAAACACGATG
CGACTATCGTCAATTACATTGGAGAGACATGCCGGTATCTTCTATCCACG
CCACCAGGAGAATTCGACCGCAAACACAAAGTTCGAATTGCTACAGGAAA
CGGCCTACGACCTTCCATTTGGGACGACTTCAAAGATCGCTTCAACATTG
GTATGATTGCGGAATTTTATGGTGCCACGGAGGGCAATGCAAACATGATC
AATAACACTGGCAAAAGTGGAGCTGTTGGATATAATTCTGTTCTCTTCCC
TTTCGTTTACCCAATCAAGATTGTCCGTATCGATAAAGAAACTGGTCAAG
ATCGAAGATGTGTACCGCCTTATAAGTCGTTCATTACCTGCTTACGCATG
CCCCATTTTCCTTCGTATCACGACTGGCGACCTGGAGAAAACGTCAACGT
ACAAATACAAGAAAGTGAAATTACGCGAGCAATTTTATGATCCCTCGTTG
TGTGGAAGCGATGAATTGTTTTATTTCAATGGAAAGGAAAAGACATTCTT
ACCCATCACTTCCGATGCTTTTGCCCAAATTAAAAATCGGGAAATTCGAT
TTTAGATGGAAAGGAGAGAACGTGTCCACCAATGAAGTTGAAGGAGTGAT
CAGTAAAGCATTGGAATTGAGCGATGTTTGCGTTTACGGTGTCGACGTTG
ATGGTGTGGAAGGAAAAGCTGGTATGGTCATCATGTCCGACCCTGAACGA
AAGGTGCTTTACTTCGAGGACCAGACGGTTTGGCCATTCCATGTGGGCCA
GGAGAGGTAGGGGAACTAGTGGGTAAAGTAAAAACAGACGCCATACATCA
ATTCGATGGATATGTTAACCAAACCGCCACTAAGAAAAAGATCGCGTACG
ACGTCTTCAAGAAAGGAGATTCAGCTTTCATGACCGGAGATGTTTTGTAC
CAAGATGAATTGGGATATTATTTCTTCCAGGATCGTATGGGAGATACCTT
TAGATGAGTTCTTGTCATTGCAATTATAATTTACAAACAAAATTCATCCG
ACACGTGCGACGAAATTCGAGAATGTATCACTTAGCAAGCTGCTTGGCAG
CAGCTGCCATCGGACAAAAATATTTTGATCTTCCATGGTTAACTGCATTA
GCCGGCGGTGCTGCCGCATATATTCTCACTGGAGGTTGGAAATGGGTACG
CTTGTTTTATCTGACTATCGGTAGAGATCTGCAACTTGGAAAAGTATTCA
TTGGTGTAGAAATGTTTATCCGAAATCTATCCAAGAAAAACATGGTCGTA
GCTGATGTCTTCTCCGAAACTGCAAAGAAATTTCCCAACAAACCAGCATT
CGTTTCAGTTGATACAGGAGCCTCCATGACCTACCAGGAAGCAGAAGAAT
TCAGTAACAAGATTGCAAACATTTTCCAAGAAGCTGGCTATAAGAAGGGT
GATGTAGTTGCTTTATTGATGGAGAATTGCATCGAATACATCCCGATTTG
GATCGGATTGACTAGAATTGGTGTCACTGTATCTCTTTTGAATTACAACG
TCAAAGGGGAAGGCTTAAAACACTGTATCACAGTGGCTGATTGTAAAGCT
GTTATCTATAGCCCAACACTTGAAGGCTCTTTGAAGGACATCGAATCTTC
TTTGGGAAACATGAAATACTACATGTTTGCAGATAGTGCTGGTGAACTAG
ATCGAGCACAAAGTTTGAAGAAGTTGATGAATTCTGCATCTTCTTACGCT
CCAAGCAGACATGCACCACTCTCAATCACCGATAAAATGTTGTTCATCTA
CACATCGGGTACCACTGGATTACCTAAAGCTGCTGTAATCCGAGGTACAA
GATTCACATTCATGAGCTATGCGGTCGCTCATGCTATCGGAGCGAAAGCG
GACGATGTTCTTTACAATACTTTACCACTTTATCACAGCAATGGCGGTAT
TGGGCTAGCTGGCCAAATCCTTTACACTGGCAGTACTTTGGTTATCCGTA
AGAAGTTTTCAGCAAGTCGATTCTTTGAAGATTGTTATAAACACGATGCG
ACTATCGTCAATTACATTGGAGAGACATGCCGGTATCTTCTATCCACGCC
ACCAGGAGAATTCGACCGCAAACACAAAGTTCGAATTGCTACAGGAAACG
GCCTACGACCTTCCATTTGGGACGACTTCAAAGATCGCTTCAACATTGGT
ATGATTGCGGAATTTTATGGTGCCACGGAGGGCAATGCAAACATGATCAA
TAACACTGGCAAAAGTGGAGCTGTTGGATATAATTCTGTTCTCTTCCCTT
TCGTTTACCCAATCAAGATTGTCCGTATCGATAAAGAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031077XLOC_031077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048923-exon-scaffold_148-1575043694:205807..205915TCONS_00048923-exon-scaffold_148-1575043694:205807..205915Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1575043694:198762..200104TCONS_00048923-exon-scaffold_148-1575043694:198762..200104Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1575043694:198336..198585TCONS_00048923-exon-scaffold_148-1575043694:198336..198585Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1575043694:197695..197842TCONS_00048923-exon-scaffold_148-1575043694:197695..197842Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1575043694:196706..197330TCONS_00048923-exon-scaffold_148-1575043694:196706..197330Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1510915933:205807..205915TCONS_00048923-exon-scaffold_148-1510915933:205807..205915Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1510915933:198762..200104TCONS_00048923-exon-scaffold_148-1510915933:198762..200104Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1510915933:198336..198585TCONS_00048923-exon-scaffold_148-1510915933:198336..198585Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1510915933:197695..197842TCONS_00048923-exon-scaffold_148-1510915933:197695..197842Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1510915933:196706..197330TCONS_00048923-exon-scaffold_148-1510915933:196706..197330Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1491911889:205807..205915TCONS_00048923-exon-scaffold_148-1491911889:205807..205915Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1491911889:198762..200104TCONS_00048923-exon-scaffold_148-1491911889:198762..200104Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1491911889:198336..198585TCONS_00048923-exon-scaffold_148-1491911889:198336..198585Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1491911889:197695..197842TCONS_00048923-exon-scaffold_148-1491911889:197695..197842Clytia hemisphaericaexon
TCONS_00048923-exon-scaffold_148-1491911889:196706..197330TCONS_00048923-exon-scaffold_148-1491911889:196706..197330Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048923-proteinTCONS_00048923-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:196706..205915 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
146.495	141.208	135.681	136.204	42.8248	35.5073	79.2068	91.5537	108.187	135.564	157.295	69.3482	74.8446	76.9068	74.8448	93.7766	86.6478	76.5142	39.6174	62.7279	63.4676	66.7441	131.026	125.522	74.0337	82.0351	79.2828	110.257	217.963	162.492
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
IPR020845AMP-binding_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00048923 vs. Swiss-Prot (Human)
Match: S27A4 (Long-chain fatty acid transport protein 4 OS=Homo sapiens GN=SLC27A4 PE=1 SV=1)

HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 275/640 (42.97%), Postives = 418/640 (65.31%), Query Frame = 3 
Query:  195 ASCLAAAAIGQKYFDLPWLTALAGGAAAYILTGGWKWVRLFYLTIGRDLQLGKVFIGVEMFIRNLSKKNMVVADVFSETAKKFPNKPAFVSVDTGASMTYQEAEEFSNKIANIFQEAGYKKGDVVALLMENCIEYIPIWIGLTRIGVTVSLLNYNVKGEGLKHCITVADCKAVIYSPTLEGSLKDIESSLGNMKYYMFADSAGEL----DRAQSLKKLMNSASSYAPSRHAPLSITDKMLFIYTSGTTGLPKAAVIRGTRFTFMSYAVAHAIGAKADDVLYNTLPLYHSNGGIGLAGQILYTGSTLVIRKKFSASRFFEDCYKHDATIVNYIGETCRYLLSTPPGEFDRKHKVRIATGNGLRPSIWDDFKDRFNIGMIAEFYGATEGNANMINNTGKSGAVGYNSVLFPFVYPIKIVRIDKETGALLRGPDGLAIPCGPGEVGELVGK-VKTDAIHQFDGYVNQTATKKKIAYDVFKKGDSAFMTGDVLYQDELGYYFFQDRMGDTFRWKGENVSTNEVEGVISKALELSXXXXXXXXXXXXXXKAGMVIMSDPERKVKIEDVYRLISRSLPAYACPIFLRITTGDLEKTSTYKYKKVKLREQFYDPSLCGSDELFYFNGKEKTFLPITSDAFAQIKNRE 2099
            AS +      +    LPW          Y+ +GGW+++R+F  TI RD+  G V + V+  +R   ++   V  +F+ T ++ P+K A +   T    T+++ +E+S+ +AN  Q  G   GDV A+ MEN  E++ +W+G+ ++GV  +L+N N++ + L HC+T +  +A+++   +  ++ ++ +SL +    +F   + E        + L  L+  A  + PS       TDK+ +IYTSGTTGLPKAA++  +R+  M+  V +    + +D++Y+ LPLYHS G I   GQ L  G T+VIRKKFSASRF++DC K++ TIV YIGE CRYLL+ PP E + +H+VR+A GNGLR SIW +F  RF+I  +AEFYGATE N ++ N   + GA G+NS +  FVYPI++VR++++T  L+RGPDG+ IPC PGE G+LVG+ ++ D + +FDGY+NQ A  KKIA DVFKKGD A++TGDVL  DELGY +F+DR GDTFRWKGENVST EVEG +S+ L+++DV VYGV+V G EG+AGM  ++ P     +E   +++ + LP YA PIFLR+   +L KT TYK++K +LR++ +DP++   D LFY + ++  ++P+  +A+++I+  E
Sbjct:    5 ASLVGVLLFSKLVLKLPWTQVGFSLLFLYLGSGGWRFIRVFIKTIRRDIFGGLVLLKVKAKVRQCLQERRTVPILFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAICEVHASL-DPSLSLFCSGSWEPGAVPPSTEHLDPLLKDAPKHLPS-CPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIRLVRVNEDTMELIRGPDGVCIPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLDMADVAVYGVEVPGTEGRAGMAAVASPTGNCDLERFAQVLEKELPLYARPIFLRLLP-ELHKTGTYKFQKTELRKEGFDPAIV-KDPLFYLDAQKGRYVPLDQEAYSRIQAGE 640
The following BLAST results are available for this feature:
BLAST of TCONS_00048923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S27A40.000e+042.97Long-chain fatty acid transport protein 4 OS=Homo ... [more]
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