TCONS_00048992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048992
Unique NameTCONS_00048992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048992 ID=TCONS_00048992|Name=TCONS_00048992|organism=Clytia hemisphaerica|type=transcript|length=761bp
attttctttccgccaaaatttcttcctttaaggtattgtTAAAGTTATAG
ACATATTGTTATAAAGTTATGAAACGGTTACTGACAAAAACAAACTGGTT
TCGTTCATGCCTTCTACGAGAAGAAGAAAATAGACATTATGAAAGTAATT
AATGAGAAAAAACATattcattgataaaaaactttaaaaataaaaatggc
cGACGAACAAAAAGCACAATACACTGGATGTGAAGGGCCAGACTCAATGT
ATGTTAAATTGATCTCAAGTGACGGTCTTGAATTCATTGTCAAAAGAGAA
CATGCACTGACTTCAGGAACCATCAAAGCTATGCTCAGTGGTCCAGgACA
ATTTGAAGAGAACGATACCAACGAAGTGTCATTCCGTGAGATTCCGTCAC
ACGTCTTAGAGAAAGTCTGCACGTATTTTTCTTACAAAGTTCGATACACA
AATAGCAGTTCCGAAATCCCCGAATTCCAAATCCAACCAGACATCGCATT
AGAATTGCTAATGGCAGCAAATTTCTTGGATTGTTAAAATAATCGCATGG
TATGAAGCCACGATTTGGTAATTTTGTTGGTTCTTTGGTATTTTAGATAA
AAGACTTCCTAGAACATTTTGATATACAAAGGGGCTTGTCGCACTAATTG
AAAAAGAGCGTCTTGattgttatttttgtaaataaataacCATGTTTTTT
ATTGAGTAACTtgtaaaaaataagaagaaaaaacGTTGGTCAACTCGAAT
CTTGTTTCTCT
Run BLAST on NCBI

protein sequence of TCONS_00048992-protein

>TCONS_00048992-protein ID=TCONS_00048992-protein|Name=TCONS_00048992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MADEQKAQYTGCEGPDSMYVKLISSDGLEFIVKREHALTSGTIKAMLSGP
GQFEENDTNEVSFREIPSHVLEKVCTYFSYKVRYTNSSSEIPEFQIQPDI
ALELLMAANFLDC
Run BLAST on NCBI

transcript from alignment at scaffold_15:322999..325578+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048992 ID=TCONS_00048992|Name=TCONS_00048992|organism=Clytia hemisphaerica|type=transcript|length=2580bp|location=Sequence derived from alignment at scaffold_15:322999..325578+ (Clytia hemisphaerica)
attttctttccgccaaaatttcttcctttaaggtattgtTAAAGTTATAG
ACATATTGTTATAAAGTTATGAAACGGTTACTGACAAAAACAAACTGGTT
TCGTTCATGCCTTCTACGAGAAGAAGAAAATAGACATTATGAAAGTAATT
AATGAGAAAAGTAagcatttatttatttagtagAAAGTCTAggtcaaaga
aaaatttgagctgACGTGGGCACGCAAAAATCTCGAGGGCACGTGGGTAC
GCAAGATTTTTGAGGGCACATGGATACGCGAAATTTTTGAGTGCACGTCA
AAATAGTGGGCATGTGGGCACGCAAAGGCACATGGACACTCGNCACGTGG
GTACGCAAGATTTTTGAGGGCACATGGATACGCGAAATTTTTGAGTGCAC
GTCAAAATAGTGGGCATGTGGGCACGCAAAGGCACGTGGACACTCTGGCA
CGTGGACACTTGGGCACGCAAAGGCACGTGGGCGCATGGAAAAAAGTAGG
GCATGTGGGCACGCAGGGCacgtcatttaacagactcatttttgcaaaag
ttccagaaatgaaaataaagggataatgataattgatgATCTGCGTCAAT
ACCAtaaagctagaattgcttcGTGTCtccttcgcttgagaaaatgattg
acagattaaagtttttcacctgCGGGGTAGCTCAAGGTAGCTCGTGGGCG
TTCTGGGAATCAATCAATCTGAAACAAGCTAATAGATTCGGGTGAAGTCC
TCAAGGGTAAAGTTCTCAATTGATAAAACTTCTTTCGTATTTTACAGAAC
ATattcattgataaaaaactttaaaaataaaaatggccGACGAACAAAAA
GCACAATACACTGGATGTGAAGGGCCAGACTCAATGTATGTTAAATTGAT
CTCAAGTGACGGTCTTGAATTCATTGTCAAAAGAGAACATGCACTGACTT
CAGGAACCATCAAAGCTATGCTCAGTGGTCCAGGTATGTAAAAAATGCTC
TCGCTTCGATCGAATAACTTATTATATCCAATTCTAGGTTTTCCTCAGCC
AACTTTGATGACAAATGCTTTATGACAACAGTTATCGCTACAGAAATTTT
TAGAGATGCACTCGAGTGCGctctttttattaaaaatgataCGTCTCTTT
AAGACGAGTCAGTTATTGTATGGaagttttttttggaccacccggtaTGT
GACGTAGTTTCATGAAAAGGTCTATGTGTGAGAAATTTTAGCTTCTAGTA
GATGCGTAGAAAATTTCCGTCCCCGTCACAAAATATATTTGTAGATTGTA
GTTTTGCTGCTGGCAGAAAATTTGAAGgcgttattttcttttttattctt
aggACAATTTGAAGAGAACGATACCAACGAAGTGTCATTCCGTGAGATTC
CGTAAGTTTTGTTATACAGTTggtgctctctaattcgacgttctactatt
cgataggctcccttattcgatgaattttaaagtccccgtcaacaagaagc
TCTCATAAatgacgctcccttattcgataagctctcttattcgatgaaag
tccaattccccttgaagatcgaatttagagagcgtcaactgtattgttAA
ATTATCATAGATACAATATTGTTTATGATAACTATGTCTTTTAAAGTGAT
TATATTAAATACaacatagtgcggaaaggggtctgctccgcccttcttaa
atgaccccccccctaacctttaaaaatgcctatcccccaagaattttgga
tgaaaatagctaacaaatataatgtgaaatatctttagagagagaaagcg
aaataataaacttctttcttctttttgactcaaactactctaacagaaaa
ctttctttcaccaaatttcataacatgtgcttgaaaataatctaaaatat
atatgtaagccccccttcttaaactatcccccccttccttgctatccccc
tttctcatgaaaatttttgacccccccccccttcttcatCTTTTCGAAAG
GTGTCATACCCCTTAAGAAAGAGGGGGGCGAACTATGTACAATTTTGAAT
TTCGCAGGAAttaacttttgcaattttgttgAGAATTTGTTTTTATCTCA
TTCAGTGAATCTCTGACTCAAAAATGACTCaaaaagggaacttttttgCA
GCTAAAAACAATGATGCTATCGAAATACATAataatgtttcttttatttc
ttttaattttccagGTCACACGTCTTAGAGAAAGTCTGCACGTATTTTTC
TTACAAAGTTCGATACACAAATAGCAGTTCCGAAATCCCCGAATTCCAAA
TCCAACCAGACATCGCATTAGAATTGCTAATGGCAGCAAATTTCTTGGAT
TGTTAAAATAATCGCATGGTATGAAGCCACGATTTGGTAATTTTGTTGGT
TCTTTGGTATTTTAGATAAAAGACTTCCTAGAACATTTTGATATACAAAG
GGGCTTGTCGCACTAATTGAAAAAGAGCGTCTTGattgttatttttgtaa
ataaataacCATGTTTTTTATTGAGTAACTtgtaaaaaataagaagaaaa
aacGTTGGTCAACTCGAATCTTGTTTCTCT

Coding sequence (CDS) from alignment at scaffold_15:322999..325578+

>TCONS_00048992 ID=TCONS_00048992|Name=TCONS_00048992|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_15:322999..325578+ (Clytia hemisphaerica)
atggccGACGAACAAAAAGCACAATACACTGGATGTGAAGGGCCAGACTC
AATGTATGTTAAATTGATCTCAAGTGACGGTCTTGAATTCATTGTCAAAA
GAGAACATGCACTGACTTCAGGAACCATCAAAGCTATGCTCAGTGGTCCA
GgACAATTTGAAGAGAACGATACCAACGAAGTGTCATTCCGTGAGATTCC
GTCACACGTCTTAGAGAAAGTCTGCACGTATTTTTCTTACAAAGTTCGAT
ACACAAATAGCAGTTCCGAAATCCCCGAATTCCAAATCCAACCAGACATC
GCATTAGAATTGCTAATGGCAGCAAATTTCTTGGATTGTTAAatggccGA
CGAACAAAAAGCACAATACACTGGATGTGAAGGGCCAGACTCAATGTATG
TTAAATTGATCTCAAGTGACGGTCTTGAATTCATTGTCAAAAGAGAACAT
GCACTGACTTCAGGAACCATCAAAGCTATGCTCAGTGGTCCAGgACAATT
TGAAGAGAACGATACCAACGAAGTGTCATTCCGTGAGATTCCGTCACACG
TCTTAGAGAAAGTCTGCACGTATTTTTCTTACAAAGTTCGATACACAAAT
AGCAGTTCCGAAATCCCCGAATTCCAAATCCAACCAGACATCGCATTAGA
ATTGCTAATGGCAGCAAATTTCTTGGATTGTTAAatggccGACGAACAAA
AAGCACAATACACTGGATGTGAAGGGCCAGACTCAATGTATGTTAAATTG
ATCTCAAGTGACGGTCTTGAATTCATTGTCAAAAGAGAACATGCACTGAC
TTCAGGAACCATCAAAGCTATGCTCAGTGGTCCAGgACAATTTGAAGAGA
ACGATACCAACGAAGTGTCATTCCGTGAGATTCCGTCACACGTCTTAGAG
AAAGTCTGCACGTATTTTTCTTACAAAGTTCGATACACAAATAGCAGTTC
CGAAATCCCCGAATTCCAAATCCAACCAGACATCGCATTAGAATTGCTAA
TGGCAGCAAATTTCTTGGATTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031118XLOC_031118Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048992-proteinTCONS_00048992-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048992-exon-scaffold_15-1491911889:322999..323158TCONS_00048992-exon-scaffold_15-1491911889:322999..323158Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1510915933:322999..323158TCONS_00048992-exon-scaffold_15-1510915933:322999..323158Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1575043694:322999..323158TCONS_00048992-exon-scaffold_15-1575043694:322999..323158Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1491911889:323796..323981TCONS_00048992-exon-scaffold_15-1491911889:323796..323981Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1510915933:323796..323981TCONS_00048992-exon-scaffold_15-1510915933:323796..323981Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1575043694:323796..323981TCONS_00048992-exon-scaffold_15-1575043694:323796..323981Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1491911889:324351..324399TCONS_00048992-exon-scaffold_15-1491911889:324351..324399Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1510915933:324351..324399TCONS_00048992-exon-scaffold_15-1510915933:324351..324399Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1575043694:324351..324399TCONS_00048992-exon-scaffold_15-1575043694:324351..324399Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1491911889:325213..325578TCONS_00048992-exon-scaffold_15-1491911889:325213..325578Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1510915933:325213..325578TCONS_00048992-exon-scaffold_15-1510915933:325213..325578Clytia hemisphaericaexon
TCONS_00048992-exon-scaffold_15-1575043694:325213..325578TCONS_00048992-exon-scaffold_15-1575043694:325213..325578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:322999..325578 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
357.516	349.098	479.523	537.785	161.213	117.598	128.574	137.62	161	118.66	128.408	131.281	110.782	126.425	103.574	104.923	149.452	152.386	92.5077	89.9659	178.642	165.676	182.414	163.582	155.66	174.871	138.943	120.2	83.7489	78.2443
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016073Skp1_comp_POZ
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
Blast
[Close]
BLAST of TCONS_00048992 vs. Swiss-Prot (Human)
Match: ELOC (Elongin-C OS=Homo sapiens GN=ELOC PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 6.009e-64
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 1 
Query:  202 DEQKAQYTGCEGPDSMYVKLISSDGLEFIVKREHALTSGTIKAMLSGPGQFEENDTNEVSFREIPSHVLEKVCTYFSYKVRYTNSSSEIPEFQIQPDIALELLMAANFLDC 534
            D ++  Y GCEGPD+MYVKLISSDG EFIVKREHALTSGTIKAMLSGPGQF EN+TNEV+FREIPSHVL KVC YF+YKVRYTNSS+EIPEF I P+IALELLMAANFLDC
Sbjct:    2 DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
The following BLAST results are available for this feature:
BLAST of TCONS_00048992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOC6.009e-6483.78Elongin-C OS=Homo sapiens GN=ELOC PE=1 SV=1[more]
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