TCONS_00048993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048993
Unique NameTCONS_00048993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048993 ID=TCONS_00048993|Name=TCONS_00048993|organism=Clytia hemisphaerica|type=transcript|length=3326bp
tcagaattcacattttaataaaaagaaataataaataCACGACTTTGGTA
ATTATCTGATTATAATTATTGATGGAGAGTTTCATTGGCAAGCAGCTACA
GCTTGACTATGAAGAAGATGATGGATTCATTACTTACAAAGGCACAGTCA
AAAATGTAGATACAAGACAAAAGAAACTTATCATCAAAAATGTGTTTGAC
ATCACCAATGATAAAAAGCTTCGAAACGAAAAACATTGCTTTGGTGAAAA
GATAAAAGATTTAAAAATATTACAAGATGCTCCGCTAGATAAAGAATCAA
GacCTATTACCAGTGACGTCAAATATGAAAAGAAGAACCAGAATTCAACG
CTTTATATGGACACAGCAGATGAAGGGACGTCACTCTTTCAAATGGATCA
TCTTCAACCCTCAAACTATATCAATGGGATTGACTCAAACTTTTCTGATT
TGTCATTGAATGAACCTCCAAAAGTCATTCTGATTGATAAGATTGACTCT
TCATTTTACCAAGCAcATACAATGATATGCAACCAGAAGAACATATCTAT
GTTGGTGGACGGACCAAAAATTAATCGATTTGGTGACATCTCCTTACTAA
CCATCGGAACAAGACACATGGTCTATCTGTTTGACATTGAATCCCTGGGA
AATGATGCCTTCCAAAAAGGATTATTATCAGTCATTGAAAATCCGAATAT
TTTAAAGATTTGTCACGATGTTCGAATGGTAAGCGATTGTCTTCAAGGCA
GATACCATATTCATCCAGTGAACATATTTGACACACAGGTTGCTGATGCT
TTTgtacataaaaatgaaaatggtaCTTTCCCTGAGAAAGTATCATCATT
ATCAGAGTGTGTCAAAAAACATTTGCCAATTGAAGATTTAGGATTTGACA
ACAAATCATTAAACTTAAGGGACAGACCAATAAGCATGGAAACCCAGAGA
CACATTGCTTTGAGAGCAATGTATCTTCGTGAATTGAGAACAATCATGAT
GGAGAAATTACTAGCAGATTACTTGTATGGCGTTGACATTTACTTGAAAA
CAATTCGACAAGAACCTGACCATGGCTTGAAGTTTGTAAGATTAAATTCT
CTTTCTAATTAACAGCCCGGCATTCTGCTCTCACAGGGTTTTAGTGAGTT
CATTTGACAAGTCTTGGCTTTTGATCACTGAAGATGAAGCTAGCAGATTA
GATGAATCTTTTGAGATATTTATTccattttaaggtttttgtcTTGCTTT
AGTAACCCGTTATGGCCATCTAAGTAGCCGAAGTAGAGTTTTATATACAT
TCACTGCTGTCAAAAACTTTACTCTTTTTAGGTAAATACAAATAAGTTGC
CTCGTgaaatgataaaacagttttcgAATAAAACAACAGACAATCACCAC
CgagggaaatttcaaacttccaGAAGGAAAAACAACAACAGGAACATTGA
AGATGAATTAGAAGACGAGACATTTAATGACTTTGTAGTACAACAATCGA
ATCGAAGCGCTTGGGACGCGGGTGAAACTTTCTCACAACAATACCAAGAA
AAACATGGTGAAATCGTAGAAAGCATGGGTGATAAGTTTACACTCTTGAA
CCATGATAAACCAATATTACGTCAATCTAACAGTCCAAACCTTTCAGATT
CCCAGAGATCTGATAAAGAATCAACTCCACTCGACATCAAAGGAAAGCCT
CATTCGAAATCATCTAACAAAGGATCAGACTCGGATACAAGTGTCGGCTC
AAAGCGTCAAAAATCACATGTTCGCCAGTTTAAGACACGCGAACAGAATT
TTGACGATTACCAGTTCTCAACGACTTCAGATTCAGATTGCGATCCATTT
TTGGTGACGTCTGGTGATCGTGAGGAATATGATATGGCACAGATCGAAGA
ACTCATGAAAATGGAAATGAACAAAGTCAATAATAAGCCTCATACTagca
agaaacaaaaaaatcaaacatttaatTCGAACAAAGAACAACCTTCCAAA
GGAGCTCCACATATATCAAATGCTGGTAAACGAATGATCATGAGGGGTCT
TGGTGCCGAGAAAACTACCAATAATAAATCATTAAAACCTCCGAATCAGC
AATTAACAAGAGATTCTTACTATTCTTCTTCGCCGGCATCTTCAGTTGAT
CCAAACGAGTATCCATCTCTACAAGAAGCTGCCAAAACATCATCCAAGAC
TTCACCAGGCGATagacaatcaaaatcaaaattcaacaatGATCAGTCTG
GTCATCATTCTCCTTATACCAATGGAGTAGTTTCTCCTAGTTTCAATGGA
TCTGGTAATTCACAAAATGACTCTTTTTCTAGTCCAATTAAGCCTAGAGG
GCGTGGTCAAATTCTGAGATCTTTGACAGAGAATCAAACGAACAAGAATC
GACCACCACCTGGATTTGTTGAAATTGGTGCTCCACGACAGATCCGAGAA
ATGAAGACTTCCTATGACTTTCCTTCCGATGACGAACTTTTAGATACTCC
TCATGTTTTGAAAGCTGTTGAAGGAACTGTCATTACTGGAGAGAATGTAA
GcgtcttgaaaaagaaatatacaAGTCATTGATCTGATGTTGGTGGCGAC
TTTGAAATGTATGATTCTACTTGTTGATTGATGTCGGAGTCTTTTCAAGA
TTCGCAAGTACATCTGGAAAGGTTTATCTGGAAGGTCCTtgctttctttt
gttgaaaattatGGAAATACTGGGACGGTTAAAAGAAATCATTGACAATG
TTTCTTGATCTTCATGAGCAGTATTTGTTTGGAAACACTTGCTCAGCTTC
CAAGAAGTTCCCtcttttataaacaaaacaaaatgttgcataaacttttg
aaatttgttgcTGTTTGGTGTGTTGTGTTTACTGCAATTCCGCCATAAAA
ACAAAGGTCAAAAAAGGTTGATTGATATTTTGGGCTAAAAAGTgtttgaa
aaatggcaaaagtgGTTTGGATTTACCATTAATTTCTTCGTAAGCTTATT
TCTAGATAGCTTTTGTTTTCTGATCCTGTGTCATGCTTCTATTTTCTCTT
TCTATCTACATTTAGTTCCCAGTCTTTTGGCTTTAGAAGGACACAGTAGC
TGGTTTCACATGACAtagttatttttctttgaaaaacggAACTCACCCTT
TCTTCTTTTCTATTCTTAAaaaccaaatttaatttttcatattttagttc
atgattttaaaattgtttgttttcattttaaccTAAAAAAGTTGTGTTTG
TTAAGTATATGTTGCACTAATCTTTGTAAGAGGTTTTATGATGCAGTATT
TTTATGGTCGATATTTTAAACATGTC
Run BLAST on NCBI

transcript from alignment at scaffold_15:344512..351498+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048993 ID=TCONS_00048993|Name=TCONS_00048993|organism=Clytia hemisphaerica|type=transcript|length=6987bp|location=Sequence derived from alignment at scaffold_15:344512..351498+ (Clytia hemisphaerica)
tcagaattcacattttaataaaaagaaataataaataCACGACTTTGGTA
ATTATCTGATTATAATTATTGATGGAGAGTTTCATTGGCAAGCAGCTACA
GCTTGACTATGAAGAAGATGATGGATTCATTACTTACAAAGGCACAGTCA
AAAATGTAGATACAAGACAAAAGAAACTTATCATCAAAAATGGTAAAAGT
TACTAGTATAATAGGCTTCTTGTTAAAGTTTGCAGTataactttgtattt
ttaaaacACTAATTTCAACAGTctcagaaaaatgaaattcagcTAGTTAA
AAGTTTCTCTTTCAGTTAGGAACTAACAAAAGTTACAATTAATTAGGTTA
GGAATAATAAAACTGTGTGAGAAAATCCTCGCAAAAACTTATTCAATAAT
GTTTCTTTCCATCATTGATTTTCAGTTAAGTTTGCAATCTGTTGACCAAT
ATGcttaaagaaaataaactttagACAGAGATGCAGACTGTAATAAACTT
TCAAGCCagactttttcaatttcaatcaaatctAATAACTATCATAATTT
TTTCAGTGTTTGACATCACCAATGATAAAAAGCTTCGAAACGAAAAACAT
TGCTTTGGTGAAAAGATAAAAGATTGTAAGTATAGTAATAAATTATCAAA
AGCTTCCATCCATGTTCACAAATTCACCGTTCATGTCTTGAACTTTGTTT
GAACCCTTTTCTGTTGATTAATAGATTAACATTTGAATACGATTTTATTA
TAAAATTGACTTCTAATACCAAAGGATATAGAGAAACCTTATTGTAAGTT
CTAAATTTGCTATGGTTATCTAAGTATTTTTTTTGATGGTTTTACTTTTA
TAGTAAAAATATTACAAGATGCTCCGCTAGATAAAGAATCAAGGtatatc
aaaatttgataaatttttatttcattgacCATTTTGATGATATGTACATT
ATGATTAGATGATATTGAGATAAGCAGTGATTAATATGGATAAAATGTGG
AAAGTGTTTTTTTAAGTCTGGGTGCCTTTTAAAACCTTACGTCCTTGCTT
GTATCAGGCTGactattattttctttttagacCTATTACCAGTGACGTCA
AATATGAAAAGAAGAACCAGAATTCAACGCTTTATATGGACACAGCAGAT
GAAGGGACGTCACTCTTTCAAATGGATCATCTTCAACCCTCAAACTGTAA
GATCGGTTATATAGTTTTTGGAATTATGAATCTAATAAAGCTACTTTTTG
ATCCCACACATATTCTCCCCTCTTAATGTTATCTCAAGCTTCAATGCCCC
TAATATGATTGCTAATAATTctcgaaaacaaaattttatctgATTTTACC
ACTCTTGATATTGATATGTTAACCATTTTAATTTGTTTCTGAAATATTCA
GATATCAATGGGATTGACTCAAACTTTTCTGATTTGTCATTGAATGAACC
TCCAAAAGTCATTCTGATTGATAAGATTGACTCTTCATTTTACCAAGCAG
TAAGTAATGTATTGAGCTTAATCGATTTATTATAAAGGATTGTGTTTTGA
GCCCTTTTTTAATCAGTGAAAATCTCCAACTAAGAGTGTGTAAGGAGCTG
GGATTCTGGCCAGGATCCCAGGCATGGGTACTGGATCCAAGGAATCTTAT
TGGGTCtgctttttcttgaaattgttttgtttgcagattttcatgttttg
aatgaaaatttaactgtttgatatttttgtttttatttaattagcATACA
ATGATATGCAACCAGAAGAACATATCTATGTTGGTGGACGGACCAAAAAT
TAATCGATTTGGTGACATCTCCTTACTAACCATCGGAACAAGACACATGG
TCTATCTGTTTGACATTGAATCCCTGGGAAATGATGCCTTCCAAAAAGGA
TTATTATCAGTCATTGAAAATCCGAATATTTTAAAGGTAGGCTGGGTTAT
GTAAGGCTATATCTTAATTTGCTATTAAAGTGAAGGGTTTGAAAAGTTTG
CATCACCGTTCCTTATACAATTTTAGTGCAATATATTATAAACCCTCTTA
ACCCGtcgagcatcttcctatttttttactaggagacccccccccccccc
tttgaaATCTCAAGATAGACAAGTgctatgaccttgaaattttgtgaaag
acCAGTGATAGATATGTCAACGGTTTCTGTTACTAATCTCTAACTGACAA
ATCAGCCTTCAAGAAAATTGTTTAGTCAAATCGAAcgagtcaatcagtca
atacatgattttgGTCAATCTTACATTCTGGTCTGTTAAATACCAACCAG
ATAAGTGGccgaaccaaaattttgtcaattatCTTCAACTATACATATCC
TATCACTGgtctttcacaaaatttcaaggCCTATAGCACTTGTCTATCTT
GAGATTTCAAGGGgggatcaaaaagtatgcagaCCGCTCCCTTTTTACCT
AAAAAGCTCAATTTGAGTATAACCACTCGTCCGATTTGCTCGAAATTTCG
ACTGCAAGCTTTTATGATCAATACCTAACACTTgtcaaaattttaagtca
aaagcATTTTCCGATCATTACATATAGAATTCTAGGGCTGTTTAGGCAAA
AAGGGCAATTTTgggccggtctgtaaaatacacgataccAACAGGTAGTG
AAAAAATTACCATCTGCACCAATAAGTACATGTCACATGATGTGGCCTAa
caaatttgagcaaaaaaaattaaagtgaaaaaaaattaaaaggggGTCCT
ATTTTCTTAAAGCATCACCAATGATgctgaaattttcaacaaagatgCCA
ATTCATATTTGGGGCACActtacaaaatttcaagtcaattggataaaata
attcaaaagtgataaaaaaaattcgtttTGGGGTGGGGGCCTCATGCCCT
CCCccaagatgctcgaagggtcAACACTTGATTGGAAAGAAAGTAGAAAC
TGTAATACAATAACTCGCCTGTATATATTCTCTTTTCCCCAAGATTTGTC
ACGATGTTCGAATGGTAAGCGATTGTCTTCAAGGCAGATACCATATTCAT
CCAGTGAACATATTTGACACACAGGTAAGAAtttatgaaacatttttaat
ctTCAAAGTCAATAGGAAGAACATGATTTAGAAAAGCCCTGGAAAACATG
CTACGGAAAACCAAGAACATCCTACAGAAAACCAGACAGAAACTCAGGGA
TTTTCCTTTCAAATTGTCTTTAACTTGATTTCGATATCCTAAGTTCTCTG
TATAACAGAAAGGCTTGTATGGATCTGTTTTACTTGATTTATAAAAGTTT
CTTCCTTTGGGGCCAACCATGTGACTCCTCAGATCCATTTAAAGTCATTT
GTATTGTAATCTCTATAATGTTTTGTAAACATGGTGTTGAAAAGTTTCAA
CAATTTCGAAATCAGTTATGGATTTCATTcagggaaaatattttgtttta
aaactcgGGGAAACTCGGGGAGAAGCTGCATTTCTTAATTTCTGCCTGAA
CCATAAAGAAGTACGAATTGTTATTTGTAGGGCTCGTAAAACgtaaattt
tctttctatcGTTCTTGTATTTTTAGGTTGCTGATGCTTTTgtacataaa
aatgaaaatggtaCTTTCCCTGAGTATGTCATTATTGATAAGTCTAAATT
CTACGAAATAAATTTATTCTCTGCAATTTTCTTTCTACAATAGAATGAAA
GACTGTTTTTCATGCAAACGTGAAATCAAATACACGCCTTACCATCgtta
cgtcatttttcaaacGTGTCAAAATAATTAAGCTGACAAGGGTGTGATTG
GTCAGGATTGGCTCTTCGGAAAGGCTCGACTATCAACTATCATTAATGTC
TTTTTATTGAGGtatttggctcaaattttactTCGGGTTTCTCCTACCTT
TCAGGAAAGTATCATCATTATCAGAGTGTGTCAAAAAACATTTGCCAATT
GAAGATTTAGGATTTGACAACAAATCATTAAACTTAAGGGACAGACCAAT
AAGCATGGAAACCCAGAGACACATTGCTTTGGTAAGTATAatgagctttt
ccagaaaagaattttacccccactgttgaggatattattcttcgaagtat
cgaaccccctggatatcctactttattattacccctggatatcgtatttt
ttacttgaaaagacactttacctcctggatatccgctcccttgtagatat
ttaaccccctgcctggatatccacttttgaacaaaaatcgtttaaccccc
tggatatccgatattctcaacagggggcacggactatttttTTAAAGGCC
AATGTTGGTTTACCGACTTTGACAGAattttttgatacttgataAGTATA
AATTAAACCCACGACCTATTGCACTGTAATCGGATGCCCTATCATTGCAC
TATGTGGTGCTACACGACTGCGATCTTACATTAGCCAGCCTTCATACGTT
GAACCTCTTAAATCTCGAATGTTTCTGTAACTCGCAAGTTTTTATGGTCC
ACGGAGATTTTTGATTTAACTAATTGActaaatttgtccaaaaaagccAT
CCCTGTCTTCTTCTCCAAGTCTCTGTCACTTtgcttaaaaataaaaccaa
aattcaTACTATTTATCTTTCAGAGAGCAATGTATCTTCGTGAATTGAGA
ACAATCATGATGGAGAAATTACTAGCAGATTACTTGTATGGCGTTGACAT
TTACTTGAAAACAATTCGACAAGAACCTGACCATGGCTTGAAGTTTGTAA
GATTAAATTCTCTTTCTAATTAACAGCCCGGCATTCTGCTCTCACAGGGT
TTTAGTGAGTTCATTTGACAAGTCTTGGCTTTTGATCACTGAAGATGAAG
CTAGCAGATTAGATGAATCTTTTGAGATATTTATTccattttaaggtttt
tgtcTTGCTTTAGTAACCCGTTATGGCCATCTAAGTAGCCGAAGTAGAGT
TTTATATACATTCACTGCTGTCAAAAACTTTACTCTTTTTAGGTAAATAC
AAATAAGTTGCCTCGTgaaatgataaaacagttttcgAATAAAACAACAG
ACAATCACCACCgagggaaatttcaaacttccaGAAGGAAAAACAACAAC
AGGAACATTGAAGATGAATTAGAAGACGAGACATTTAATGACTTTGTAGT
ACAACAATCGAATCGAAGCGCTTGGGACGCGGGTGAAACTTTCTCACAAC
AATACCAAGAAAAACATGGTGAAATCGTAGAAAGCATGGGTGATAAGTTT
ACACTCTTGAACCATGATAAACCAATATTACGTCAATCTAACAGTCCAAA
CCTTTCAGATTCCCAGAGATCTGATAAAGAATCAACTCCACTCGACATCA
AAGGAAAGCCTCATTCGAAATCATCTAACAAAGGATCAGACTCGGATACA
AGTGTCGGCTCAAAGCGTCAAAAATCACATGTTCGCCAGTTTAAGACACG
CGAACAGAATTTTGACGATTACCAGTTCTCAACGACTTCAGATTCAGATT
GCGATCCATTTTTGGTGACGTCTGGTGATCGTGAGGAATATGATATGGCA
CAGATCGAAGAACTCATGAAAATGGAAATGAACAAAGTCAATAATAAGCC
TCATACTagcaagaaacaaaaaaatcaaacatttaatTCGAACAAAGAAC
AACCTTCCAAAGGAGCTCCACATATATCAAATGCTGGTAAACGAATGATC
ATGAGGGGTCTTGGTGCCGAGAAAACTACCAATAATAAATCATTAAAACC
TCCGAATCAGCAATTAACAAGAGATTCTTACTATTCTTCTTCGCCGGCAT
CTTCAGTTGATCCAAACGAGTATCCATCTCTACAAGAAGCTGCCAAAACA
TCATCCAAGACTTCACCAGGCGATagacaatcaaaatcaaaattcaacaa
tGATCAGTCTGGTCATCATTCTCCTTATACCAATGGAGTAGTTTCTCCTA
GTTTCAATGGATCTGGTAATTCACAAAATGACTCTTTTTCTAGTCCAATT
AAGCCTAGAGGGCGTGGTCAAATTCTGAGATCTTTGACAGAGAATCAAAC
GAACAAGAATCGACCACCACCTGGATTTGTTGAAATTGGTGCTCCACGAC
AGATCCGAGAAATGAAGACTTCCTATGACTTTCCTTCCGATGACGAACTT
TTAGATACTCCTCATGTTTTGAAAGCTGTTGAAGGAACTGTCATTACTGG
AGAGAATGTAAGcgtcttgaaaaagaaatatacaAGTCATTGATCTGATG
TTGGTGGCGACTTTGAAATGTATGATTCTACTTGTTGATTGATGTCGGAG
TCTTTTCAAGATTCGCAAGTACATCTGGAAAGGTTTATCTGGAAGGTCCT
tgctttcttttgttgaaaattatGGAAATACTGGGACGGTTAAAAGAAAT
CATTGACAATGTTTCTTGATCTTCATGAGCAGTATTTGTTTGGAAACACT
TGCTCAGCTTCCAAGAAGTTCCCtcttttataaacaaaacaaaatgttgc
ataaacttttgaaatttgttgcTGTTTGGTGTGTTGTGTTTACTGCAATT
CCGCCATAAAAACAAAGGTCAAAAAAGGTTGATTGATATTTTGGGCTAAA
AAGTgtttgaaaaatggcaaaagtgGTTTGGATTTACCATTAATTTCTTC
GTAAGCTTATTTCTAGATAGCTTTTGTTTTCTGATCCTGTGTCATGCTTC
TATTTTCTCTTTCTATCTACATTTAGTTCCCAGTCTTTTGGCTTTAGAAG
GACACAGTAGCTGGTTTCACATGACAtagttatttttctttgaaaaacgg
AACTCACCCTTTCTTCTTTTCTATTCTTAAaaaccaaatttaatttttca
tattttagttcatgattttaaaattgtttgttttcattttaaccTAAAAA
AGTTGTGTTTGTTAAGTATATGTTGCACTAATCTTTGTAAGAGGTTTTAT
GATGCAGTATTTTTATGGTCGATATTTTAAACATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031119XLOC_031119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048993-exon-scaffold_15-1491911889:344512..344703TCONS_00048993-exon-scaffold_15-1491911889:344512..344703Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:344512..344703TCONS_00048993-exon-scaffold_15-1510915933:344512..344703Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:344512..344703TCONS_00048993-exon-scaffold_15-1575043694:344512..344703Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:345068..345136TCONS_00048993-exon-scaffold_15-1491911889:345068..345136Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:345068..345136TCONS_00048993-exon-scaffold_15-1510915933:345068..345136Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:345068..345136TCONS_00048993-exon-scaffold_15-1575043694:345068..345136Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:345365..345404TCONS_00048993-exon-scaffold_15-1491911889:345365..345404Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:345365..345404TCONS_00048993-exon-scaffold_15-1510915933:345365..345404Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:345365..345404TCONS_00048993-exon-scaffold_15-1575043694:345365..345404Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:345592..345707TCONS_00048993-exon-scaffold_15-1491911889:345592..345707Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:345592..345707TCONS_00048993-exon-scaffold_15-1510915933:345592..345707Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:345592..345707TCONS_00048993-exon-scaffold_15-1575043694:345592..345707Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:345913..346010TCONS_00048993-exon-scaffold_15-1491911889:345913..346010Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:345913..346010TCONS_00048993-exon-scaffold_15-1510915933:345913..346010Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:345913..346010TCONS_00048993-exon-scaffold_15-1575043694:345913..346010Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:346256..346447TCONS_00048993-exon-scaffold_15-1491911889:346256..346447Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:346256..346447TCONS_00048993-exon-scaffold_15-1510915933:346256..346447Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:346256..346447TCONS_00048993-exon-scaffold_15-1575043694:346256..346447Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:347505..347585TCONS_00048993-exon-scaffold_15-1491911889:347505..347585Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:347505..347585TCONS_00048993-exon-scaffold_15-1510915933:347505..347585Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:347505..347585TCONS_00048993-exon-scaffold_15-1575043694:347505..347585Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:348088..348134TCONS_00048993-exon-scaffold_15-1491911889:348088..348134Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:348088..348134TCONS_00048993-exon-scaffold_15-1510915933:348088..348134Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:348088..348134TCONS_00048993-exon-scaffold_15-1575043694:348088..348134Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:348416..348542TCONS_00048993-exon-scaffold_15-1491911889:348416..348542Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:348416..348542TCONS_00048993-exon-scaffold_15-1510915933:348416..348542Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:348416..348542TCONS_00048993-exon-scaffold_15-1575043694:348416..348542Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1491911889:349135..351498TCONS_00048993-exon-scaffold_15-1491911889:349135..351498Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1510915933:349135..351498TCONS_00048993-exon-scaffold_15-1510915933:349135..351498Clytia hemisphaericaexon
TCONS_00048993-exon-scaffold_15-1575043694:349135..351498TCONS_00048993-exon-scaffold_15-1575043694:349135..351498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:344512..351498 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11544	0.847463	0.326583	0	3.09979	4.8033	3.89488	3.78577	0.790487	1.73704	1.67575	1.43549	2.25733	2.21105	1.40474	2.14472	1.45766	1.97746	1.25733	1.67304	0.660646	1.16465	1.15751	1.32408	2.24361	3.03329	3.71187	2.32151	1.35927	1.31016
Blast
[Close]
BLAST of TCONS_00048993 vs. Swiss-Prot (Human)
Match: EXD1 (piRNA biogenesis protein EXD1 OS=Homo sapiens GN=EXD1 PE=1 SV=4)

HSP 1 Score: 108.227 bits (269), Expect = 2.952e-24
Identity = 73/205 (35.61%), Postives = 107/205 (52.20%), Query Frame = 3 
Query:  480 LIDKIDSSFYQAHTMICNQKNISMLVDGPKINRFGDISLLTIGTRHMVYLFDIESLGNDAFQKGLLSVIENPNILKICHDVRMVSDCLQGRYHIHPVNIFDTQVADAFVHKNENGTF-PEKVSSLSECVKKHLPIED--LGFDNKSLNLRD--------RPISMETQRHIALRAMYLRELRTIMMEKLLADYLYGVDIYLKTIRQ 1061
            +I++    F  A   I  Q  +S+  +G  + R G +  L + T   VYLFDI  LG+ AF  GL  ++E+  ILK+ HD R +SDCL  +Y I   N+FDTQVAD      E G + P  +++L E + KHL +    L F  K   L          RP+S    + +AL A YL  LR  +++++++D    VD YL T R+
Sbjct:   80 VINQFQQKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYRE 284
The following BLAST results are available for this feature:
BLAST of TCONS_00048993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXD12.952e-2435.61piRNA biogenesis protein EXD1 OS=Homo sapiens GN=E... [more]
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