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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049392 ID=TCONS_00049392|Name=TCONS_00049392|organism=Clytia hemisphaerica|type=transcript|length=1436bp TACACATAGCGGTGAGAGACAGTGAGAAAAATGCTAGATCACCATGGAGG AGGAAACTCTAAATTACAGAGACTTTTCTTGGTGCTTCTCGGTGGGGTGA TTGTTTTGTTGGCATTAGAAGGATTGTCGATGGTCAGAAGTGAAGCAAGG TGTACTATACAACAAGTTCCAGTTGTGATACAACAAGGAGATAGGCGGGA AAAGGTTCCAAGAGAGTTTGATCTTCCAGACACTCATTCTGAACGACgtc taaaaacaacaaaaaccacAAGAAAAACTGTCCCAACGACTGAAGCCAAA ACAACAGCTGAACCTGTGACAGATGAAAACATAGCTACAGACACACCAGC ACCAGTTATCGATCAGAATCGCCAAACACAACTCCAGCGTCAACAACATT TGAAAGAGTTTTGCCAAAACAATCGAAGATTACGGACGGAAAAGTTCAAA ATCCGAGATTTCCATTTCATATATAGCGACAAAGCGTCCGCTCTATATTG TTATATCCCAAAAGTGGCTTGCACTAATTGGAAAAAGGTGTTCCAAGTGA TGGATGGGAATTATGAAACTCCTTTAGATATCAAGGGTAAagaaaaagtt cattatttaaaGTTCAATACTTTTGAGAAAACGAATTTAACTGAAATCGA GTGGCGTCGAAATTTGTATTATTCTTTCTTGTTCATACGGCACCCCTTTG AAAGGGTTTTATCAGCATACAGAAATAAGTTTCAAGATCCCTACAACGAA CAGTACCAACGTGTGTACGGCTCACGTGTTTTACGTCTGTTCCGTAAGAA CCTTACGGAAGCCGAGTACAAAGCCGGGAAGAACGTCACTTTCCGAGAAT TCGCCGATTATGTTATCCGAGTTCATACGAAACGAGAATTTGTAAACGAG CATTGGGACACGATGCATAATTTATGCCACCCTTGTCGTGTGAAGTATGA TTATATTGGCTCAATGGACTCACTTATCGAAGACTCGGAGACGGTTCTAA AAGAGATTGGTTGGTATAATCgagtcaaatttcccgccaAAGCAACGGAT AAATACAAGAATAAATTACCCACTTTGATGAAGCAATATTTTTCACAATT ACCGAGAAATGTGACAATGAAGCTGTATAAAATTTATGAAGctgatttta aagcttttggaTACTCGGCCGATGAATATCTGTAGGGATTAACAAATTAT AGTTCAGTTTTTAATGCACATCTTAGATACTTTATTTTATTCCTTTAAGA TATTTAGAGATTAGAAATTTCGAAAGCATTACAAAGAATTTACTCCACAC AGAAATGGATGGTTGTAGTGATTGAGCCGATGATAACATGTATAACAGTT TATATCAGAACCTTTGTGCAACTTTAAGCCTATTATAAATTTGCTTTTAT ATCTATTcaacatcaaaatctaagagtaAATGAgat Run BLAST on NCBI protein sequence of TCONS_00049392-protein >TCONS_00049392-protein ID=TCONS_00049392-protein|Name=TCONS_00049392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MLDHHGGGNSKLQRLFLVLLGGVIVLLALEGLSMVRSEARCTIQQVPVVI QQGDRREKVPREFDLPDTHSERRLKTTKTTRKTVPTTEAKTTAEPVTDEN IATDTPAPVIDQNRQTQLQRQQHLKEFCQNNRRLRTEKFKIRDFHFIYSD KASALYCYIPKVACTNWKKVFQVMDGNYETPLDIKGKEKVHYLKFNTFEK TNLTEIEWRRNLYYSFLFIRHPFERVLSAYRNKFQDPYNEQYQRVYGSRV LRLFRKNLTEAEYKAGKNVTFREFADYVIRVHTKREFVNEHWDTMHNLCH PCRVKYDYIGSMDSLIEDSETVLKEIGWYNRVKFPAKATDKYKNKLPTLM KQYFSQLPRNVTMKLYKIYEADFKAFGYSADEYL Run BLAST on NCBI transcript from alignment at scaffold_156:38583..42103+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049392 ID=TCONS_00049392|Name=TCONS_00049392|organism=Clytia hemisphaerica|type=transcript|length=3521bp|location=Sequence derived from alignment at scaffold_156:38583..42103+ (Clytia hemisphaerica) TACACATAGCGGTGAGAGACAGTGAGAAAAATGCTAGATCACCATGGAGG
AGGAAACTCTAAATTACAGAGACTTTTCTTGGTGCTTCTCGGTGGGGTGA
TTGTTTTGTTGGCATTAGAAGGATTGTCGATGGTCAGAAGTGAAGCAAGG
TGTACTATACAACAAGGTAGGAGAATGTTCTTTTGATctacacaccccct
tctcacggaCCTACTGGGACCCCTtgtcactggaaaaattggccaaaata
tcatcccgGGTGGAGAATTGTTCTCTAATATTGGCatccgctgaaaataa
tcaattggtatattatgctattttttccattcccactgaattttctggct
tgaaaacaatagaattcaaatccccagctataaaaaaatatgggaatatc
aattcccatcgtcctcaggccctttaagtggatttcttttcggaaaaaaa
gttgattctactaaccatttttgaaacatcattactctttcaaaaaaaat
tattttcaaaattgtttttcaacTTCATGACGAGAAAAGATAGAATTTTA
ATATGGTTACAATGATACCCATCAAGTCGGTGAAAAATTTACATAGAACT
TCATTAATGTGgaaaaaatcgctaaaaaatacataaaatggcGCCTCCGC
GGGATACAGCGTTGAGCTTTTCACCTCAACTTTTNATATGGTTACAATGA
TACCCATCAAGTCGGTGAAAAATTTACATAGAACTTCATTAATGTGgaaa
aaatcgctaaaaaatacataaaatggcGCCTCCGCGGGATACGGTGTTGA
GCTTTTCACCTCAACTTTTGTACACGAGTACTTCAAGCAGGTGGCTATTC
GAAACTACCTCAATAGTGAAAGATATATTTGTAGTCTTTTCTCTATGCAA
GAAAGAATTACCAAAACTTCAGTATTTTCACTTGAGTTCAAAGTTCAAGC
CGTATTTTAACTATATTGCACAATGAAACCCTCCACTACAGAGGTACTTT
CAATATACTTGCTCTCCTCCCTACTgccttggaaaataaaaatcacGAAT
TTCCAATTTTGTATCGCGCGGAATGTAGGAAAAACATAGTTTCTCCaaga
aaatactcaaaaaaaggAAGGTACAGGCCAATGGGTAAACCTGTTTGTTA
AAAATGGTTGATTGACAAGTAGATTCTTACGCAATAAGCCAGTaatcaaa
tttataaagaagACGCACTTCTTTCGTTCTTTTGAGCATAAACCAATTAG
CTCTCtctcttatttttttcttaaaagaatgtttacaagaataagatttc
gtttattaaataatcttttaaaagtgttgATTGATGCGTGAGGCTTTCTC
ATTGAACATACAACTCTGTCGGTGTTTTTTTAGACTGTACCAGAGAGATC
TTAGAAAAGAGGGAAAAGACAATTTTCGTTTCAGAACCACTTAAAGGGCC
TgagtctgttatttttacccccactggctgaaaatgTGTATCTACCCCTA
TTACTTTGAAACAGCCATGTCTCATATCGACACAAATTCAAGTCCAAGTT
CAATCTGTATTTAGAACCAGTTGCACCTCTTTTTGATCTTACTGATGGAC
ATTTGTGCGAATCattaaatcataaaaaaagcgGACAGcgagggactggg
ttcgaggtTAATCCGAGTGGGAAATGAGTTTCTGTATTTCGGCCAaaaga
ataaaatgaaatagGATTTGAAGAGCAAATTTAGTGCTTACGTCAAACTA
GCACACTAGCCCTTTAAGTAACTACCGATGTCGGCATTTGTATGTATTTC
AGAAAATAAAGTTAAATGTGATGGTAAATTCTCTTGTCGCTCATGttggc
atatgccgacatctggtaaataggtcgaaccttcttttttcctgacaaat
aggtcgaaccttaaaaaatacgcaCGTCATTAAAGGgcttttacatttga
aaatgaCCACCGATGTCTTCATTGCTTTCATTTCAGTTCCAGTTGTGATA
CAACAAGGAGATAGGCGGGAAAAGGTAAATTCTTGATTTGTATCAGCGTT
CCCAATTtcaacttttatttaaaagctgTTTCTATTTAGTACAAACTACG
CAGCAGTCGAGGTTATAATGAAAGATTATTGTGGAAATTTGTCCTAAGAA
GTGCACAGTGTAAAAAATCTCAGCCAAGCCCGCTATCCCGAAGTTTTAAG
CTCGTTTCGACAAACACTTATTACCATTTTAAGCTAGTCTGATCCAAATT
ATTTAAATTCCCGAACtcatatcaaaattttcttaTCAGGTTCCAAGAGA
GTTTGATCTTCCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaa
ccacAAGAAAAACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCT
GTGACAGATGAAAACATAGCTACAGACACACCAGCACCAGTTATCGATCA
GAATCGCCAAACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCC
AAAACAATCGAAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCAT
TTCATATATAGCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGT
GGCTTGCACTAATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATG
AAACTCCTTTAGATATCAAGGGTAAagaaaaagttcattatttaaaGTTC
AATACTTTTGAGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTT
GTATTATTCTTTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAG
CATACAGAAATAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTG
TACGGCTCACGTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGA
GTACAAAGCCGGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTA
TCCGAGTTCATACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATG
CATAATTTATGCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAAT
GGACTCACTTATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGT
ATAATCgagtcaaatttcccgccaAAGCAACGGATAAATACAAGAATAAA
TTACCCACTTTGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGAC
AATGAAGCTGTATAAAATTTATGAAGctgattttaaagcttttggaTACT
CGGCCGATGAATATCTGTAGGGATTAACAAATTATAGTTCAGTTTTTAAT
GCACATCTTAGATACTTTATTTTATTCCTTTAAGATATTTAGAGATTAGA
AATTTCGAAAGCATTACAAAGAATTTACTCCACACAGAAATGGATGGTTG
TAGTGATTGAGCCGATGATAACATGTATAACAGTTTATATCAGAACCTTT
GTGCAACTTTAAGCCTATTATAAATTTGCTTTTATATCTATTcaacatca
aaatctaagagtaAATGAgat Coding sequence (CDS) from alignment at scaffold_156:38583..42103+ >TCONS_00049392 ID=TCONS_00049392|Name=TCONS_00049392|organism=Clytia hemisphaerica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_156:38583..42103+ (Clytia hemisphaerica) ATGCTAGATCACCATGGAGGAGGAAACTCTAAATTACAGAGACTTTTCTT GGTGCTTCTCGGTGGGGTGATTGTTTTGTTGGCATTAGAAGGATTGTCGA TGGTCAGAAGTGAAGCAAGGTGTACTATACAACAAGTTCCAGTTGTGATA CAACAAGGAGATAGGCGGGAAAAGGTTCCAAGAGAGTTTGATCTTCCAGA CACTCATTCTGAACGACgtctaaaaacaacaaaaaccacAAGAAAAACTG TCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGACAGATGAAAAC ATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATCGCCAAACACA ACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAACAATCGAAGAT TACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCATATATAGCGAC AAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTTGCACTAATTG GAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACTCCTTTAGATA TCAAGGGTAAagaaaaagttcattatttaaaGTTCAATACTTTTGAGAAA ACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATTATTCTTTCTT GTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATACAGAAATAAGT TTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGGCTCACGTGTT TTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACAAAGCCGGGAA GAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGAGTTCATACGA AACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAATTTATGCCAC CCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACTCACTTATCGA AGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAATCgagtcaaat ttcccgccaAAGCAACGGATAAATACAAGAATAAATTACCCACTTTGATG AAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGAAGCTGTATAA AATTTATGAAGctgattttaaagcttttggaTACTCGGCCGATGAATATC TGTAGATGCTAGATCACCATGGAGGAGGAAACTCTAAATTACAGAGACTT TTCTTGGTGCTTCTCGGTGGGGTGATTGTTTTGTTGGCATTAGAAGGATT GTCGATGGTCAGAAGTGAAGCAAGGTGTACTATACAACAAGTTCCAGTTG TGATACAACAAGGAGATAGGCGGGAAAAGGTTCCAAGAGAGTTTGATCTT CCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaaccacAAGAAA AACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGACAGATG AAAACATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATCGCCAA ACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAACAATCG AAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCATATATA GCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTTGCACT AATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACTCCTTT AGATATCAAGGGTAAagaaaaagttcattatttaaaGTTCAATACTTTTG AGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATTATTCT TTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATACAGAAA TAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGGCTCAC GTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACAAAGCC GGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGAGTTCA TACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAATTTAT GCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACTCACTT ATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAATCgagt caaatttcccgccaAAGCAACGGATAAATACAAGAATAAATTACCCACTT TGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGAAGCTG TATAAAATTTATGAAGctgattttaaagcttttggaTACTCGGCCGATGA ATATCTGTAGATGCTAGATCACCATGGAGGAGGAAACTCTAAATTACAGA GACTTTTCTTGGTGCTTCTCGGTGGGGTGATTGTTTTGTTGGCATTAGAA GGATTGTCGATGGTCAGAAGTGAAGCAAGGTGTACTATACAACAAGTTCC AGTTGTGATACAACAAGGAGATAGGCGGGAAAAGGTTCCAAGAGAGTTTG ATCTTCCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaaccacA AGAAAAACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGAC AGATGAAAACATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATC GCCAAACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAAC AATCGAAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCAT ATATAGCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTT GCACTAATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACT CCTTTAGATATCAAGGGTAAagaaaaagttcattatttaaaGTTCAATAC TTTTGAGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATT ATTCTTTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATAC AGAAATAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGG CTCACGTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACA AAGCCGGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGA GTTCATACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAA TTTATGCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACT CACTTATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAAT CgagtcaaatttcccgccaAAGCAACGGATAAATACAAGAATAAATTACC CACTTTGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGA AGCTGTATAAAATTTATGAAGctgattttaaagcttttggaTACTCGGCC GATGAATATCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049392-exon-scaffold_156-1491911889:38583..38748 | TCONS_00049392-exon-scaffold_156-1491911889:38583..38748 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1510915933:38583..38748 | TCONS_00049392-exon-scaffold_156-1510915933:38583..38748 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1575043694:38583..38748 | TCONS_00049392-exon-scaffold_156-1575043694:38583..38748 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1491911889:40569..40606 | TCONS_00049392-exon-scaffold_156-1491911889:40569..40606 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1510915933:40569..40606 | TCONS_00049392-exon-scaffold_156-1510915933:40569..40606 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1575043694:40569..40606 | TCONS_00049392-exon-scaffold_156-1575043694:40569..40606 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1491911889:40872..42103 | TCONS_00049392-exon-scaffold_156-1491911889:40872..42103 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1510915933:40872..42103 | TCONS_00049392-exon-scaffold_156-1510915933:40872..42103 | Clytia hemisphaerica | exon |
TCONS_00049392-exon-scaffold_156-1575043694:40872..42103 | TCONS_00049392-exon-scaffold_156-1575043694:40872..42103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_156 | supercontig | scaffold_156:38583..42103 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR005331 | Sulfotransferase |
Vocabulary: Molecular Function
Term | Definition |
GO:0008146 | sulfotransferase activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
BLAST of TCONS_00049392 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.239e-54 Identity = 94/243 (38.68%), Postives = 139/243 (57.20%), Query Frame = 1
Query: 463 HFIYSDKASALYCYIPKVACTNWKKVFQVMDG--NYETPLDIKGKEKVHYLKFNTFEKTNLTEIEWRRNLYYSFLFIRHPFERVLSAYRNKFQDPYNEQYQRVYGSRVLRLFRKNLTEAEYKAGKNVTFREFADYVIRVHTKR-EFVNEHWDTMHNLCHPCRVKYDYIGSMDSLIEDSETVLKEIGWYNRVKFPAKATDKYKNKLPTLMKQYFSQLPRNVTMKLYKIYEADFKAFGYSADEYL 1182
H + + +YCY+PKVACTNWK++ V+ G Y P++I E T + ++ EI R Y FLF+R PFER++SAYRNKF YN + + YG+++++ RKN T+ + G +V F EF Y+I HT+R E NEHW T+++LCHPC + YD +G ++L EDS VL+ G + +KFP A K + ++F + +LY++Y+ DF F YS YL
Sbjct: 109 HLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYA--KSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
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