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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004863 ID=TCONS_00004863|Name=TCONS_00004863|organism=Clytia hemisphaerica|type=transcript|length=2414bp CTTGATTCAATCATTTTATGATTACTTGGCAtcattttcagAGAAGTTTG AATAAGAAATCAGGAGATGTCAAAACGTAATTCAACCATAAAAGCTAAGA CACCTTCAGATATGGCTGCTTATAATGTTAGTCCAGGAAACTTTTGGGAA ATTGGAAATTATACTAGATGTTGTAAAAGAATTACAGACAGTAATAATTT GTGTGATGACTTAATAAAAATGTACACTGAAAGGGCTGAAATAGAAGCCA AATACAGCAAAAAGTTGACAGACTGGCATGAACGATGGTCCAAACATTTA GAAGCTTCTCCAGCAGTTTATGCCACAATGAAAACAGCTCATTTAGGGAC ATTGAAAGAAGCCCACGATAGGGCTATTATTCACATGGACTGCTGGACCA AAATACACAATCAAGTTGTGGAAACTATCAAACGTGAAAAAGAGTCCAAA TATCATAAAGCTTTTGTTGGTATCAAAGAATACAAAGAGCTTGATGAAGA ATTTGGTAAGGCTCAAAAACCATGGGCTACAGCATTCGGGAAAGTTCAAC GTGCAAAAAAGAATTATCATTCTGCCTGTAAATCAAGAGACTCTGCAAAG CTAAATCTTGATCAAAATAAAGATGTTGCACCTCCTGAAAAGATAAAGAA ACTGGAGGAAGCTATCGAAAAACAGGAAAAGTCTGTCTCTACAATGCAAg gaaaatatgaagaaaaactttcaagaaTCGAACCAATCAACAAGTCGTAt gaagatgaaatgaaaaaagtttattcaaaattttcgaaagctGAAGAAGA ACGTAAAGATTTTTTGCAAAGGATAATGGTGGAATTTCATAAAGCAGTCA ACGTGTCGGAAGATCCTAGGCTTAAAGAATGTTTCGAGAACCAAATCAAT GCAGCATACGCAGGAAAAAGTAGCTATGACGTCACTTGGTATTCCGAAAA CTATGGTGCTGACATGGCAAGAAACTGGCCCAAATTTGAGGAATTAGGAG ACCTGCCAGATCTCCCTGCACCAGTGCGTGCTGTGGAGCCTCCAGAGAAC CAGCGTTTCAGTAGCAATTCATCTATTCCACGGTCGGGCTCCAGTCAGTT CCAGCAACAAACCAATACATTGTATGAACCAGCTTCTCAACAGAGTGTTG TACCCGTACAATCACAACAGGTGGCTTCTTATCAACCGAACAATGAACCA GAAGAATCGAATCCTTTCATGAATGGCGATGATGATGACGATGTAGATGG AGCCGAATGGGATAACCCACCACCACTGCCAGCAGAAGGAGTTCCAGTAC GCGCTCTTTATGATTACGATAAGGTCGAGGATGATGAACTCTCTTTCAAA GCAAATGATATTCTCACCAAGTTGAGTGAAGAAGACGAACAAGGGTGGTG CAGAGGGCGCCTCGATGGCGTCGAAGGATTGTATCCCGCCAATTATGTTG AACTCATGTGAATAATGGGCAGTTGTTTGAAATGGAAATTACCGTAGTTC GATTGGTTGGCGTTGTTCATTATCCCCAGCTCAGAAGACGTTGGATTTAA GCATCCGGTTCCTGATCAGAATGTTTGAAGGGATTTAATCTCACGTGGAT GATGTTTAAGTAGTTATTCTACGCAAGTTCAATGTAAACCGAAGAAAAAA GATCCCTAAATAAAGGGTCCCATAGATTTTCCAGGAGATTTCTACATATT GCCAAGAAAATGGAATAAAATCGTCCAAAACAGtatattaaaaagaaaga agagattATTAAGAGAATACACAACTATTCATTAGGTCACTAGTTATATC AATCAACGCTACATTTATTATCGCCGTGTTTCTGCTCCGATTGTGGCCGT TAAAAAGGAGATGGCTTTCCGGAGCATTCCAATGGAATGATGTTCACAAG GGAGTTCTTTAAAGTGATACTCGAACGTTGGTTTAAAATGATGACGTGAC ATGTTCAGTTagttaaatattttttccaatttttcaagtattttatgttt tatctgtcgcgtttgttttttttagtttccaTAGCAACTTTAACTTTAAG TTGACTTTGtttttaatggattttttcATACATCAGGTGTAATTGtagtc tgaattgcagacctctGCAAAACACCAGGTAGTATAGGAATCCAGCAGCC TAGTATATTTGAACATGTTTTCAAAACCTTTGAGACTTTTGGAGATTTTA TCGTATTTTCCAATGGTGACCGTGCAACTTTCTCCCCCAATGTCGAAATT TTCACTAAGTAGTaatcttaaattttcaaatatataaTGATATCATAATT TTTAGTCTGCGGTTTATTAGTTTAGAATCATCACGAATATTATAGATGGA ACAGGAAAATGTAATTAGCAGGTTATATTTATGTACAAAAATgaattcat tttgaaaatgaaac Run BLAST on NCBI protein sequence of TCONS_00004863-protein >TCONS_00004863-protein ID=TCONS_00004863-protein|Name=TCONS_00004863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MSKRNSTIKAKTPSDMAAYNVSPGNFWEIGNYTRCCKRITDSNNLCDDLI KMYTERAEIEAKYSKKLTDWHERWSKHLEASPAVYATMKTAHLGTLKEAH DRAIIHMDCWTKIHNQVVETIKREKESKYHKAFVGIKEYKELDEEFGKAQ KPWATAFGKVQRAKKNYHSACKSRDSAKLNLDQNKDVAPPEKIKKLEEAI EKQEKSVSTMQGKYEEKLSRIEPINKSYEDEMKKVYSKFSKAEEERKDFL QRIMVEFHKAVNVSEDPRLKECFENQINAAYAGKSSYDVTWYSENYGADM ARNWPKFEELGDLPDLPAPVRAVEPPENQRFSSNSSIPRSGSSQFQQQTN TLYEPASQQSVVPVQSQQVASYQPNNEPEESNPFMNGDDDDDVDGAEWDN PPPLPAEGVPVRALYDYDKVEDDELSFKANDILTKLSEEDEQGWCRGRLD GVEGLYPANYVELM Run BLAST on NCBI transcript from alignment at sc0000049:349829..358815+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004863 ID=TCONS_00004863|Name=TCONS_00004863|organism=Clytia hemisphaerica|type=transcript|length=8987bp|location=Sequence derived from alignment at sc0000049:349829..358815+ (Clytia hemisphaerica) CTTGATTCAATCATTTTATGATTACTTGGCAtcattttcaggtttttttt
tgtattaaaaggACTTCGGAAACTCCAAATTTTgtcgtttgttttgtttt
tttgcagaGCAAGGGGATCGTTTTTTAACAACTTTATGCTAAGAAAATTT
TCGTTTGTTTGAACAACACagataaatttctttgtttttctttcgttATA
GAGAAGTTTGAATAAGAAATCAGGAGATGTCAAAACGTAATTCAACCATA
AAAGCTAAGACACCTTCAGATATGGCTGCTTATAATGTTAGTCCAGGAAA
CTTTTGGGAAATTGGAAATTATACTAGATGTTGTAAAAGAATTACAGACA
GTAATAATTTGTGTGATGACTTAATAAAAATGTACACTGAAAGGGCTGAA
ATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGGCATGAACGATGGTC
CAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCACAATGAAAACAGCTC
ATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTATTATTCACATGGAC
TGCTGGACCAAAATACACAATCAAGTTGTGGAAACTATCAAACGTGAAAA
AGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAAAGAATACAAAGAGC
TTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGGCTACAGCATTCGGG
AAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCCTGTAAATCAAGAGA
CTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGTTGCACCTCCTGAAA
AGGTAAAAATTTCACAGtacaaaaaaatggaaaaaagtcAAATTCTAAAT
TGTTCATGAAATTTTAAACCAAACagtaaaaagtaacaaaaaatcAACTA
CTGTACTGTAAGTCTATTTCTGTCACCTTTCTTAGAGActggaataatag
gaaggtNGTCAAATTCTACATTGttcatgaaattttaaacacgaccctcg
acatggcccgagaattctcgggcctcttcgggccatgttcgggccgagag
accctatcaattcttttggcccgaacatgacccgaagaggcccgagaatt
ctcgggcctcttcgggccatgttcgggccgagagaccctatcaattcttt
tggcccgaacatgacccgagtcattcgggccatgttcgggccatgttaat
tgttaaattgactcagcatgtccagtcaaacaaaatagtacaaaatattg
tctgttttgtttctatcgctcaaaaaaactttacgagcttcccgtggaca
cgcttcagtttaaaaccaggaccagtttactagcaaattatttccaccct
aagtatatctataatataactatgttttcataccaaataagacatttaat
atttatatgaatttacaacattcatatattcagtcctgaaattacacgcc
tgtttaaatcatgttttcaaaagttggcccgagtgtggcccgtgcgtggc
ccgcgtatggcccgaacacggcccgaattctcgggccatactcgggcctt
acgcgaattccaataaaNAAATttctttaggcgtacaaactttcatgatt
tttgcaaattttagcccttttcgtgaaagtaaatgtctcagaaaattctt
gagaggataatttgcgaaagtttatgctcgaaaaaaaatctgaaaagaaa
atttactcaaatttttctttatcatGATGACAAGGATAAGATTTAGTGTA
GATATTATGCAAAAGTCCATGAATTGTGGTTTGAATACGatcaaaaaact
ggttttatgCACAGAAAACTTGAATACGtttgcgaaaaattttttttgtc
aattttgtgaAAGTAAATATCGTAGATTTCACAATTTTTCGACCTCGCTA
AAGTTTCTGATCGCAAAACTttttacgcctaaagtagtagGGGATGGTAA
TATAAGACCAACTTACAGACCTTCTTAACAAGAGCGCTAACAAGCACTGT
TTAGTGTGGCAATTTGGATgccaaaaattcgaaatttcaaataatttcaa
ataaatacttttgtGCAGTGTTATGTAACGTAGCTTTTTGTAATGTCAAC
ATCCTTGTCTAATTCCgccatagcaactatctggtctgcaaagtaTTTAG
AGTGAATTCTTTAAACAACTGATTTAGAAGGTTTTATccatgaaaatttt
gaagaccagatagttgctatgatGGAATAAGACAAGGTATGTCGGCATTA
GGCAAAGTTACAGTNgctcgggccatactcgggctttacgcgaattccaa
taaaagtttggcccgagaattctcaggccatgtcgagggtcgttttTAAA
CCAAACagtaaaaagtaacaaaaaaccAACTACTGTACTGTAAGTCTATT
ATGTCACTTTTCTTAGAGActggaataataggaaggttagAATCGCTTCA
TGAAAAATCGCTTTTCCTGTCTGGCCACTATACAACCAACAGCATTGCCC
GAACATGTGCAGGCCTCACGATTACAAAGCTtacaaaggcttataacggc
tacatatagtgctggtcgacaaagataaacaaacatcgactgtaaaaaat
ctgtctaaagtcaatgcattgccctcttttgacatCAATGCAatgtaatg
tcttctttcaatcttttccaagcaaagattttaactgccaactttggGCC
TACtcaaacaattagaataggcagggaaGAAAGTCtaccgtctaaactag
agctaaagaATCGtgtcaattgaaaaaaaattagtgaTGCCTACCTTTCT
ATTATACTTTTCTCTAGTGAAGGGTGACagaattactttaggcgtacaaa
cttttgcgagcagaaactttcacgatttttgcaaattttagcccttttcg
cgaaagtaaatgtcttagaaaattcttgagaggataattcgcgaaagttt
atgctcgaaaaaaaatctgaaaagaaaatttactcaaATCTTTCTTTATC
ATGATGACAAGGATAAGATTTAGTGTAGATATTATGCAAAAGTCCTTGAA
TTGTGGTTTGAATACATTTGAGCGatcaaaaaactggttttatgCACAGA
AAACTTGAATTTTCTGCTAAAAATATTTGTCATATATACGtttgcgaaaa
attatttttatcaatttcgtGAAAGTAAATATCGAAGATTTCACAATTTT
TCGACCTCGTGAAactttgtacgcctaaagtaatagAGGATGGTAATATA
AGACCAACTTACAGACCTTCTTAACAAGAGCGCTAACAAGCACTGTTTAG
TGTGGCAATTTGGATgccaaaaattcgaaatttcaaataatttcaaataa
ataCATTTGTCCAGTGTTATGTAACGTAGCTTTTTGTAATGTCAACATCC
TTGTCTAATTCCGCCATCgcaactatctggtctgcaaagtaTTTAGAGTG
AATTCTTTAAACTTTAGAAGGTTTTATccatgaaaattttgaagaccaga
tagttgctatgatGGAATAAGACAAGGTATGTCGGCATTAGGCAAAGTTA
CAGTACAAATTTTACTGAAATAAATGTTAGAAGCCAATTTTATGTCGCCC
TAAACAAGCTGACTGTAATCCAAGAAGAAATTTAgttgaaaatttaattt
aagaTATGATCAGAAAAGTTTACTTCAGAGAGAAATTAGTTTGGTGGATG
ACTGGAAGATTTAAATTTGACAGGATTTTATTCTACGTACGAAGgatatt
ttttgccaaaatccaTTTCCAATAAGCATAAAACCTGTTTGATGGTATAA
ACTGATGAAATTGTGGGAATTAGGAAATGCATAAAATAGTctagatttgg
aaaaaatttaattttgcaagcATAGTAGGAAAGATCAATTTTGGTAAAGt
ctgaaaaatttgccaaattttctttcctctAAAATTCCTTTAAAAGGTAC
TACAGGAAAAAGTTTTACTTTGCGTCCAGTTggatttccaaaaattgaaa
ttctaaaCTTAACACTGAGTAAAACTTGTACCAcaagaaagctcttttta
acAGACATGACTGTTTCTTACCTTGAGTCATTCAACTTGGAAATCATGAA
AATATGCAAGAAACAAGCATAAAGGCCAAAAAGGTTACGTTTAAGAAAAC
CTCAATATCTTAATTGCAGATAAAGAAACTGGAGGAAGCTATCGAAAAAC
AGGAAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaaactttca
agaaTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagttta
ttcaaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGA
TAATGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGTAA
GTAATAGAAGTTACTGATGTATCTTTGTATCCCATTATTTATGCCTTTTT
AGAATTTGGTTATCAGACGCTGCAAAAAAAGCCTTTGAGAAGAAAAAGTT
CTGTTTTCAGTCTTTTAGTTTTCATGCGTCTTCAGCGCATACCTCCCTGT
GTTTCCACAAGTTAGCCTGCTTTGTGTTTCTATCTATTCatcattttatt
gttctaaCTAAAAAACAAAGGTATTGAATTTTTAGCTTGTTTTTCTAAAT
ATGAAAAGGGTGGGTCAGTTGGATAGTGAATCTTATCTGCTTGTGTTCTA
GGCTTAAAGAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAA
AGTAGCTATGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATGGC
AAGAAACTGGCCCAAATTTGAGGTATGTTTCTCTGCCTCTATGTCAGTAG
TCACATTCGAGGTAAAGATATCAGTAATGCGTGTTTATAAATAGTTGTGG
CTAGGAAAAGTGGCTTTGGACTTCCTTTCCCATTTTTCATCATACTTTCA
TATCATTCCTTTCATTCTTTCGTAGGTATTCTCTTCTTCAGAATGGAACC
CTTGGAGTAGAAACAGTTTATCAAGTACTCAGAGAAAGCAGAATCGCAGA
TATGCCACTAGACCTAGGCCACGTCCTTATGATTTAGACAAGTCTCCTAG
GGTATACTGTACTTTTAGACAAAAAGCTAGAGAAGCCTTCTTGATAAAAC
AATGTCAGCTTGTTCAGGATGATAATAGATTTATGGATTTTGTTGTTAAA
GTCTGGTTATtcttgtttttgacttttagctGATTGtcaaagttttttat
caataacaCAGTATATACTTTGATTGATCAATCTGTTATCTCTTTCTTTT
CTCTATGGGAATATGTATGAGAGTTGTGTGTTGTGTATATATTTACGTTT
ACAGTTTCTTTTTATAGTAGTAGACTTATGACAGGATGAAACCTGAGCTT
TATAATGACTACTCTATGTCATGCAATGTCTCTGGTTTTCTACTTTCAAC
CCTTCTACTTTATAATGGTGCTCTGTTATAGGAATTAGGAGACCTGCCAG
ATCTCCCTGCACCAGTGCGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTC
AGTAGCAATTCATCTATTCCACGGTCGGGCTCCAGTCAGTTCCAGCAACA
AACCAATACATTGTATGAACCAGCTTCTCAACAGAGTGTTGTACCCGTAC
AATCACAACAGGTGGCTTCTTATCAACCGAACAATGAACCAGAAGAATCG
AATCCTTTCATGAATGGCGATGATGATGACGATGTAGATGGGtaagggaa
tttttttattgatttcattGTTTAATTTGGGTTTAAATGTATATAACACT
AAGAAATTCAGCAAAACGAATCAAAGCTAATTGGTTGGAGTGTGACGTCA
GTCCCAAAATAGATCAATAAAAAGTATCGTTTACTTTTTGAATGATCCTT
CATGTAAGGCAGAAATGTCACGACATTTAGCCAAGAATTTCCTTCAGTGA
TGGTTTATTTTGTGTTCTGACTAGTTAAAGCTCAGTACAAACTGGTAAGG
AGATGAGTTGATTATAGTCTTGATATAGATATTACTCGTGATGACTAATC
GATTGTTTgcaattcaatttcaattaGCAACCAATCTTACGAAATTGATA
CATTCGTTATAGTAACAAACAAACACTTAATTGATGAGCTATGCCCTTTC
GGCTTTACTCAGATTTTACATTTCATACATAGAGATTCTCATTCTGATAA
AACCTGAAAGAATTCATGGCATTTTTGTAATAAAGCTAAATCAGGCTTTA
ATTTCTTGCAACTAATGGCTTTTCCGTAATTAGAACATATTTGATTCAAC
AATAACATGATTTCCTCTTTTGGAAATCAGTTTGTCACGCGTGGTCCTAT
CATATTTTGTAGACGAggatattttcgattttcgaaagTTCATACTGAGA
CTTCTATGCTGGATTTTTtcttcgaacatttttattatgGACTCATGGGG
ATTGCTCTTCCTCTTTTATGATGATATCgattcaaatttctcatattTTG
TGAATTAGTGATTATTCCCCTTGTGATATCTTGATTTAAAAGTAGTTTAA
TACATCAAgctatttataagcacattgaAGGGTTTCTGCTATATTTCTGA
CATGGTATGTCAATCTGTCACCCTACCCTGTTTAATCacattttttcact
gtttattATCGAGTAAATATTATTTCTCTCATTCACATTACATTGCTGTT
AAAATTCTTTGTTGTAAGACTGATCACTTCAGATCATAATTGTAGTAAAA
TTTTGTGGGTGTACTGTAATGTGATACCAATTTCGCTTCAGTCTGTAgta
ttttaaatgattttaacCCTTGTTTGAAAATTAATGTTATTAGATTTTGT
AGATTATTAATAGAATATTGCGCAATCAACGAGCATCGGGATATTTGATA
ATCAAATTCTTTACAGGGTGGTATGTTGTATTTAAACATCTTGCATAAAC
GTCGTTCGATTTATCTCAACGATCTGACGACCTCACAAATCTTAAACAAT
AATCAATAAGTGATAAGGGTTTTTTTGCTTCTGAGCTCTCTTGTGGTTTA
AGTTGACTGCGGtgattttcgaataaaattgTTCGCATTCCATCTGTTCT
TAATAATGTTTATTTTTAACATGGGTTTTAATCATTATTTGTTTTTCCTC
AAAACAAGACGGATAATTGTCTCGTCGAGTTTGACACAGCTCACTTCATC
CGATTCATGCATTGTTGACCTTTTTGTTTCTAATATTTCCGTATAAGAGA
TCACGTCAcagaatatcatgaatatcgaAAACTTTTCTCGTCTAATAATC
AGTAGGATCATGGACTAAAATGGGTAAATTTAAGCTTTTCATTTTCAGCC
CAGGTCCAGATGCATGAAATGTAGTTTGACTAGAAAAGGCAAAGACTTTG
ATTCACACTTTATTAAAATCTTGAGCTGGCCTTTACTAGCTGCATACTAA
TTTTCTAACAAAAGATCTTGAATTTgacattttgttttctttttcttccg
CAGAGCCGAATGGGATAACCCACCACCACTGCCAGCAGAAGGAGTTCCAG
TACGCGCTCTTTATGATTACGATAAGGTCGAGGATGATGAACTCTCTTTC
AAAGCAAATGATATTCTCACCAAGTTGAGTGAAGAAGACGAACAAGGGTG
GTGCAGAGGGCGCCTCGATGGCGTCGAAGGATTGTATCCCGCCAATTATG
TTGAACTCATGTGAATAATGGGCAGTTGTTTGAAATGGTAAGTGAAGATT
TAaacttttcgaattttcgaCACATTCTCTCGATTATGTAACAGATAAAG
GGTCAGAAGGGACTTTATAAATACCAATTGCCCCTCCTCCTAGAGGGTAA
TTTTTATCGGTTGTTGACGAGTCGCTTAATCTTAATATTCAATGTGTTTA
ATTTCAATCAAATGTTTTCCACAAAAGTTCTGCTTTTATAATGGGATATA
TTGTTGCAGAAAATCTTTGTCATGTTTTGTCACTTGTGTCAACTTTTCTT
ATCTCCTATCGACTCGTCTTCGAATTGCTAACGTCTTTGCATTTTTTAAC
TTTCCAGGAAATTACCGTAGTTCGATTGGTTGGCGTTGTTCATTATCCCC
AGCTCAGAAGACGTTGGATTTAAGCATCCGGTTCCTGATCAGAATGTTTG
AAGGGATTTAATCTCACGTGGATGATGTTTAAGTAGTTATTCTACGCAAG
TTCAATGTAAACCGAAGAAAAAAGATCCCTAAATAAAGGGTCCCATAGAT
TTTCCAGGAGATTTCTACATATTGCCAAGAAAATGGAATAAAATCGTCCA
AAACAGtatattaaaaagaaagaagagattATTAAGAGAATACACAACTA
TTCATTAGGTCACTAGTTATATCAATCAACGCTACATTTATTATCGCCGT
GTTTCTGCTCCGATTGTGGCCGTTAAAAAGGAGATGGCTTTCCGGAGCAT
TCCAATGGAATGATGTTCACAAGGGAGTTCTTTAAAGTGATACTCGAACG
TTGGTTTAAAATGATGACGTGACATGTTCAGTTagttaaatattttttcc
aatttttcaagtattttatgttttatctgtcgcgtttgttttttttagtt
tccaTAGCAACTTTAACTTTAAGTTGACTTTGtttttaatggattttttc
ATACATCAGGTGTAATTGtagtctgaattgcagacctctGCAAAACACCA
GGTAGTATAGGAATCCAGCAGCCTAGTATATTTGAACATGTTTTCAAAAC
CTTTGAGACTTTTGGAGATTTTATCGTATTTTCCAATGGTGACCGTGCAA
CTTTCTCCCCCAATGTCGAAATTTTCACTAAGTAGTaatcttaaattttc
aaatatataaTGATATCATAATTTTTAGTCTGCGGTTTATTAGTTTAGAA
TCATCACGAATATTATAGATGGAACAGGAAAATGTAATTAGCAGGTTATA
TTTATGTACAAAAATgaattcattttgaaaatgaaac Coding sequence (CDS) from alignment at sc0000049:349829..358815+ >TCONS_00004863 ID=TCONS_00004863|Name=TCONS_00004863|organism=Clytia hemisphaerica|type=CDS|length=6975bp|location=Sequence derived from alignment at sc0000049:349829..358815+ (Clytia hemisphaerica) ATGTCAAAACGTAATTCAACCATAAAAGCTAAGACACCTTCAGATATGGC TGCTTATAATGTTAGTCCAGGAAACTTTTGGGAAATTGGAAATTATACTA GATGTTGTAAAAGAATTACAGACAGTAATAATTTGTGTGATGACTTAATA AAAATGTACACTGAAAGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTT GACAGACTGGCATGAACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAG TTTATGCCACAATGAAAACAGCTCATTTAGGGACATTGAAAGAAGCCCAC GATAGGGCTATTATTCACATGGACTGCTGGACCAAAATACACAATCAAGT TGTGGAAACTATCAAACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTG TTGGTATCAAAGAATACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAA AAACCATGGGCTACAGCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTA TCATTCTGCCTGTAAATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAA ATAAAGATGTTGCACCTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATC GAAAAACAGGAAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaa actttcaagaaTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaa aagtttattcaaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTG CAAAGGATAATGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCC TAGGCTTAAAGAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAA AAAGTAGCTATGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATG GCAAGAAACTGGCCCAAATTTGAGGAATTAGGAGACCTGCCAGATCTCCC TGCACCAGTGCGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCA ATTCATCTATTCCACGGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAAT ACATTGTATGAACCAGCTTCTCAACAGAGTGTTGTACCCGTACAATCACA ACAGGTGGCTTCTTATCAACCGAACAATGAACCAGAAGAATCGAATCCTT TCATGAATGGCGATGATGATGACGATGTAGATGGAGCCGAATGGGATAAC CCACCACCACTGCCAGCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTA CGATAAGGTCGAGGATGATGAACTCTCTTTCAAAGCAAATGATATTCTCA CCAAGTTGAGTGAAGAAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGAT GGCGTCGAAGGATTGTATCCCGCCAATTATGTTGAACTCATGTGAATGTC AAAACGTAATTCAACCATAAAAGCTAAGACACCTTCAGATATGGCTGCTT ATAATGTTAGTCCAGGAAACTTTTGGGAAATTGGAAATTATACTAGATGT TGTAAAAGAATTACAGACAGTAATAATTTGTGTGATGACTTAATAAAAAT GTACACTGAAAGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTTGACAG ACTGGCATGAACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTAT GCCACAATGAAAACAGCTCATTTAGGGACATTGAAAGAAGCCCACGATAG GGCTATTATTCACATGGACTGCTGGACCAAAATACACAATCAAGTTGTGG AAACTATCAAACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGT ATCAAAGAATACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACC ATGGGCTACAGCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTATCATT CTGCCTGTAAATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAAATAAA GATGTTGCACCTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAA ACAGGAAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaaacttt caagaaTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagtt tattcaaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAG GATAATGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGC TTAAAGAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAAAGT AGCTATGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATGGCAAG AAACTGGCCCAAATTTGAGGAATTAGGAGACCTGCCAGATCTCCCTGCAC CAGTGCGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCA TCTATTCCACGGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAATACATT GTATGAACCAGCTTCTCAACAGAGTGTTGTACCCGTACAATCACAACAGG TGGCTTCTTATCAACCGAACAATGAACCAGAAGAATCGAATCCTTTCATG AATGGCGATGATGATGACGATGTAGATGGAGCCGAATGGGATAACCCACC ACCACTGCCAGCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTACGATA AGGTCGAGGATGATGAACTCTCTTTCAAAGCAAATGATATTCTCACCAAG TTGAGTGAAGAAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGT CGAAGGATTGTATCCCGCCAATTATGTTGAACTCATGTGAATGTCAAAAC GTAATTCAACCATAAAAGCTAAGACACCTTCAGATATGGCTGCTTATAAT GTTAGTCCAGGAAACTTTTGGGAAATTGGAAATTATACTAGATGTTGTAA AAGAATTACAGACAGTAATAATTTGTGTGATGACTTAATAAAAATGTACA CTGAAAGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGG CATGAACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCAC AATGAAAACAGCTCATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTA TTATTCACATGGACTGCTGGACCAAAATACACAATCAAGTTGTGGAAACT ATCAAACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAA AGAATACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGG CTACAGCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCC TGTAAATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGT TGCACCTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAAACAGG AAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaaactttcaaga aTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagtttattc aaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGATAA TGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGCTTAAA GAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAAAGTAGCTA TGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATGGCAAGAAACT GGCCCAAATTTGAGGAATTAGGAGACCTGCCAGATCTCCCTGCACCAGTG CGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCATCTAT TCCACGGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAATACATTGTATG AACCAGCTTCTCAACAGAGTGTTGTACCCGTACAATCACAACAGGTGGCT TCTTATCAACCGAACAATGAACCAGAAGAATCGAATCCTTTCATGAATGG CGATGATGATGACGATGTAGATGGAGCCGAATGGGATAACCCACCACCAC TGCCAGCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTACGATAAGGTC GAGGATGATGAACTCTCTTTCAAAGCAAATGATATTCTCACCAAGTTGAG TGAAGAAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGTCGAAG GATTGTATCCCGCCAATTATGTTGAACTCATGTGAATGTCAAAACGTAAT TCAACCATAAAAGCTAAGACACCTTCAGATATGGCTGCTTATAATGTTAG TCCAGGAAACTTTTGGGAAATTGGAAATTATACTAGATGTTGTAAAAGAA TTACAGACAGTAATAATTTGTGTGATGACTTAATAAAAATGTACACTGAA AGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGGCATGA ACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCACAATGA AAACAGCTCATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTATTATT CACATGGACTGCTGGACCAAAATACACAATCAAGTTGTGGAAACTATCAA ACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAAAGAAT ACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGGCTACA GCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCCTGTAA ATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGTTGCAC CTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAAACAGGAAAAG TCTGTCTCTACAATGCAAggaaaatatgaagaaaaactttcaagaaTCGA ACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagtttattcaaaat tttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGATAATGGTG GAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGCTTAAAGAATG TTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAAAGTAGCTATGACG TCACTTGGTATTCCGAAAACTATGGTGCTGACATGGCAAGAAACTGGCCC AAATTTGAGGAATTAGGAGACCTGCCAGATCTCCCTGCACCAGTGCGTGC TGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCATCTATTCCAC GGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAATACATTGTATGAACCA GCTTCTCAACAGAGTGTTGTACCCGTACAATCACAACAGGTGGCTTCTTA TCAACCGAACAATGAACCAGAAGAATCGAATCCTTTCATGAATGGCGATG ATGATGACGATGTAGATGGAGCCGAATGGGATAACCCACCACCACTGCCA GCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTACGATAAGGTCGAGGA TGATGAACTCTCTTTCAAAGCAAATGATATTCTCACCAAGTTGAGTGAAG AAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGTCGAAGGATTG TATCCCGCCAATTATGTTGAACTCATGTGAATGTCAAAACGTAATTCAAC CATAAAAGCTAAGACACCTTCAGATATGGCTGCTTATAATGTTAGTCCAG GAAACTTTTGGGAAATTGGAAATTATACTAGATGTTGTAAAAGAATTACA GACAGTAATAATTTGTGTGATGACTTAATAAAAATGTACACTGAAAGGGC TGAAATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGGCATGAACGAT GGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCACAATGAAAACA GCTCATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTATTATTCACAT GGACTGCTGGACCAAAATACACAATCAAGTTGTGGAAACTATCAAACGTG AAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAAAGAATACAAA GAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGGCTACAGCATT CGGGAAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCCTGTAAATCAA GAGACTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGTTGCACCTCCT GAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAAACAGGAAAAGTCTGT CTCTACAATGCAAggaaaatatgaagaaaaactttcaagaaTCGAACCAA TCAACAAGTCGTAtgaagatgaaatgaaaaaagtttattcaaaattttcg aaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGATAATGGTGGAATT TCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGCTTAAAGAATGTTTCG AGAACCAAATCAATGCAGCATACGCAGGAAAAAGTAGCTATGACGTCACT TGGTATTCCGAAAACTATGGTGCTGACATGGCAAGAAACTGGCCCAAATT TGAGGAATTAGGAGACCTGCCAGATCTCCCTGCACCAGTGCGTGCTGTGG AGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCATCTATTCCACGGTCG GGCTCCAGTCAGTTCCAGCAACAAACCAATACATTGTATGAACCAGCTTC TCAACAGAGTGTTGTACCCGTACAATCACAACAGGTGGCTTCTTATCAAC CGAACAATGAACCAGAAGAATCGAATCCTTTCATGAATGGCGATGATGAT GACGATGTAGATGGAGCCGAATGGGATAACCCACCACCACTGCCAGCAGA AGGAGTTCCAGTACGCGCTCTTTATGATTACGATAAGGTCGAGGATGATG AACTCTCTTTCAAAGCAAATGATATTCTCACCAAGTTGAGTGAAGAAGAC GAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGTCGAAGGATTGTATCC CGCCAATTATGTTGAACTCATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004863-exon-sc0000049-1491911889:349829..349869 | TCONS_00004863-exon-sc0000049-1491911889:349829..349869 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:349829..349869 | TCONS_00004863-exon-sc0000049-1510915933:349829..349869 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:349829..349869 | TCONS_00004863-exon-sc0000049-1575043694:349829..349869 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1491911889:350030..350630 | TCONS_00004863-exon-sc0000049-1491911889:350030..350630 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:350030..350630 | TCONS_00004863-exon-sc0000049-1510915933:350030..350630 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:350030..350630 | TCONS_00004863-exon-sc0000049-1575043694:350030..350630 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1491911889:353998..354224 | TCONS_00004863-exon-sc0000049-1491911889:353998..354224 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:353998..354224 | TCONS_00004863-exon-sc0000049-1510915933:353998..354224 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:353998..354224 | TCONS_00004863-exon-sc0000049-1575043694:353998..354224 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1491911889:354530..354650 | TCONS_00004863-exon-sc0000049-1491911889:354530..354650 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:354530..354650 | TCONS_00004863-exon-sc0000049-1510915933:354530..354650 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:354530..354650 | TCONS_00004863-exon-sc0000049-1575043694:354530..354650 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1491911889:355310..355569 | TCONS_00004863-exon-sc0000049-1491911889:355310..355569 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:355310..355569 | TCONS_00004863-exon-sc0000049-1510915933:355310..355569 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:355310..355569 | TCONS_00004863-exon-sc0000049-1575043694:355310..355569 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1491911889:357332..357565 | TCONS_00004863-exon-sc0000049-1491911889:357332..357565 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:357332..357565 | TCONS_00004863-exon-sc0000049-1510915933:357332..357565 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:357332..357565 | TCONS_00004863-exon-sc0000049-1575043694:357332..357565 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1491911889:357886..358815 | TCONS_00004863-exon-sc0000049-1491911889:357886..358815 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1510915933:357886..358815 | TCONS_00004863-exon-sc0000049-1510915933:357886..358815 | Clytia hemisphaerica | exon |
TCONS_00004863-exon-sc0000049-1575043694:357886..358815 | TCONS_00004863-exon-sc0000049-1575043694:357886..358815 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000049 | supercontig | sc0000049:349829..358815 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00004863 vs. Swiss-Prot (Human)
Match: PACN1 (Protein kinase C and casein kinase substrate in neurons protein 1 OS=Homo sapiens GN=PACSIN1 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 8.783e-68 Identity = 162/453 (35.76%), Postives = 239/453 (52.76%), Query Frame = 1
Query: 139 NFWEIGNYTRCCKRITDSNNLCDDLIKMYTERAEIEAKYSKKLTDWHERWSKHLEASPAVYATMKTAHLGTLKEAHDRAIIHMDCWTKIHNQVVETIKREKESKYHKAFV-GIKEYKELDEEFGKAQKPWATAFGKVQRAKKNYHSACKSRDSA---KLNLDQNKDVAPPXXXXXXXXXXXXXXXSVSTMQGKYEEKLSRIEPINKSYEDEMKKVYSKFSKAEEERKDFLQRIMVEFHKAVNVSEDPRLKECFENQINAAYAGKSSYDVTWYSENYGADMARNWPKFEELGDLPDLPAPVRAVE----PPENQRFXXXXXXXXXXXXQFQQQTNTLYEXXXXXXXXXXXXXXXXXYQPN----NEPEESNPFMNGXXXXXXXGAEWDNPPPLPAEGVPVRALYDYDKVEDDELSFKANDILTKLSEEDEQGWCRGRLD-GVEGLYPANYVELM 1458
+FWE+GNY R KRI D + LC+DL+ ERA+IE Y ++LTDW +RW + +E P Y +++ A + EA + +H + + N+ +E +K ++ YHK + G KE KE ++ F KAQKPWA +++ AKK YH ACK A ++N + V PE+ KKL++ ++K ++ V Q KYE+ L + Y + M++V+ + + EE+R FL+ ++++ + +N++E+ + A + D+ W+ G M NWP+FEE PDLP E E ++ + S S + + + Y+ QP ++ E NPF + GA NP ++GV VRALYDYD E DELSFKA D LTKL EEDEQGWCRGRLD G GLYPANYVE +
Sbjct: 18 SFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQ-YGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVT-PEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWN--PDLPHTTTKKEKQPKKAEGVALTNATGAVESTSQAGDRGSVSSYDRG----------------QPYATEWSDDESGNPFGG---SETNGGA---NPFEDDSKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 444
The following BLAST results are available for this feature:
|