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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050168 ID=TCONS_00050168|Name=TCONS_00050168|organism=Clytia hemisphaerica|type=transcript|length=2400bp
GTTTAGCAGAGTCAGCATTAAAATCCCATGGatacaaaataatcaaaata
ttcaaacatAGCGCCAAGGAGCTGTGGTCAGTGGTGGGGAAGAGGTTGTC
TTTGTGCTGGAAAAAACCATGGCGAAATTTGTTATTGCAGGCAAATCTGA
CTGTCCATTTTATGCCAGAGCAGAGCTTCTTGCAGATGAATTAACTCTCA
AGCTTCCTAATTTCAACGTACACAAAATTGTTTTGAGTCCATCCGAATGG
AAAGATTGGGTAAAGTCCACATGTTCAGAAAAAGGTTGGAATTACTCTGG
TCAATCACCAATCATATGGAGAGAACTGATCAATAGAGGAGGGAAAGGTA
CACTTCTTGGAAGCTGTAATGATTTTCTAGAATATGCAAAAGGTTATTAT
GGAATTACTTGCAAGAATCCAACACCAGACTTGAATATAATCTCGGGTGA
AAATAAgacaacaaaagaacaaaatgaagaagaaacagAACAACTCAACG
CAGCAATTAATCCCTTTAAGATTGCTATTACGAGTGCTGACACTGATGTT
GCATACCATGCATTGCCACTGATGATAAGACAGGATATTTTCGGAGAAAA
ACAGGAGGTTTCAATCTCTCTACATTACAACGACAACAGTGAAAATGTAC
AAGAGAAAATTAATGGTTTAGTCATGGAGCTTCAAGATTGTGCAGAGCTT
GAAGTACGAGAAATAACAGCAACCTCTGTCTTGAAAGATTCTTTTCAAAA
TGCAGATTTTATTGTCATTTTAAATACAACCAAGGAGATGGATCGAAGTG
CTGTATCTCAACTACAAAAAATTGCATCCAAcctaaaaaagtgtttaaac
aACACAACTAAAATGTTAGTAATCGGGGAAAATGCTATAATTTGTTCAAA
CATTATTCACTATTTTTTAAATGGTATCCAAAGGAAAAATTTGATGGCTA
TGACTCGGTTTGAAGAGAACATTGGAAAATCTGCAGTTGCAAAGGTTTTA
GATGTGAATTCTGCTGGCGTGAAAAACTTGATTCTATGGGGCAGCTCTAA
GGAATACATTACCGATTATAGCATTGCGACAGCACAAGGATACAATGGTG
CAATCTGGGCACCGCACATCAACAAGTTTTCACATTCGGTCAGTGAAATA
ATATATAACAAGAAGTTTTTAGATAACGAGCTCCCTGAAAAACTGAACGA
TGAAAAATTACATTTAACATCACACAAATTATCATTTACAGCTGCTTTTA
TCTCTCAATTGCAAGATTTACTTTCTCAGGctgataaaaaaaatgaaatt
tattccCTTGGTGTTATTTCTGATGGTTCATTTGGCATTCCTGACGGGCT
CATTTATTCTTTCCCTGTGAAGTACACCAAGGATGGCTTAACGATTCAAA
CCAAAATAACATGTGATCAAATAATAGCAGAGAATATCAAAAGAACGGCT
GAGGAGCTTCAAGATTATTGTGATGATGCCATTGCTTTGGTAGATCCAtc
agttttaaaaagaaaagaatcaaGAGCAAATAAGCGAGCTAAAGCTGTGC
CTGATAATCTGGAAAACTTAACAGAAAATGGAACTGAAAATATTCCGACA
GATACAGACACAAAAAATCCAACAACAGAACCTACCCAAGAGGAATGAAA
TATATATCATTTTCTTAGTTGCTAGGTATTATTATAAGCCTTAAATGAAT
TTGAATCAAATTATAAAGGTCCAAATGAAAACCACCAAACTCAAAAGATT
TACAATTTCATTAAAAGATTCACAAGTATGAACTTCAGTAAAATCTAGCT
TAATATGttctgatgtttttattttcatactcaGCCAGACTTTCAGCACg
tttttatattcaattttctcattGTATGTTAATTTAACTCTTTAATTAGA
TCAGCGAAGTATAATCCTATGTCACCGACCCTTTGGAAATTAATTTTCTA
GAAAtatgttgattttctttttatcagTATAATGaacaattaaaatgttt
ttttttctgaaaatttttagcAGTTTCTATTTTTGTTGTGGGATACAAAA
GTCTTATTTGTATGTTTGGCCTCATCTTTGTGTATGGGTATAacattttg
agagaaatttaCGAAATGTTAATTTTTGGGCTATTAAAGCTCCCCTTGGG
CTGTGATTTGGGTTATGCAAAGTTAACTTTTTATTATTGTACTATCGTAC
TATTGTATTATTATTATCTTATTATTGTACATTCGTTTATCAATTAATCA
AAATGTTCACGCCCAGCTTGATTATTCATTAAATataatgatatattttt
tttcgacatATTTGAAAAGTGATGTTAGATCAAAACTTTTgatctaccgg
gtgcaccaaaaaaaagtatacaggtttttcgagatattgtgagcttcagg Run BLAST on NCBI protein sequence of TCONS_00050168-protein >TCONS_00050168-protein ID=TCONS_00050168-protein|Name=TCONS_00050168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MAKFVIAGKSDCPFYARAELLADELTLKLPNFNVHKIVLSPSEWKDWVKS
TCSEKGWNYSGQSPIIWRELINRGGKGTLLGSCNDFLEYAKGYYGITCKN
PTPDLNIISGENKTTKEQNEEETEQLNAAINPFKIAITSADTDVAYHALP
LMIRQDIFGEKQEVSISLHYNDNSENVQEKINGLVMELQDCAELEVREIT
ATSVLKDSFQNADFIVILNTTKEMDRSAVSQLQKIASNLKKCLNNTTKML
VIGENAIICSNIIHYFLNGIQRKNLMAMTRFEENIGKSAVAKVLDVNSAG
VKNLILWGSSKEYITDYSIATAQGYNGAIWAPHINKFSHSVSEIIYNKKF
LDNELPEKLNDEKLHLTSHKLSFTAAFISQLQDLLSQADKKNEIYSLGVI
SDGSFGIPDGLIYSFPVKYTKDGLTIQTKITCDQIIAENIKRTAEELQDY
CDDAIALVDPSVLKRKESRANKRAKAVPDNLENLTENGTENIPTDTDTKN
PTTEPTQEE Run BLAST on NCBI transcript from alignment at scaffold_167:718379..720778 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050168 ID=TCONS_00050168|Name=TCONS_00050168|organism=Clytia hemisphaerica|type=transcript|length=2400bp|location=Sequence derived from alignment at scaffold_167:718379..720778 (Clytia hemisphaerica)
cctgaagctcacaatatctcgaaaaacctgtatacttttttttggtgcac
ccggtagatcAAAAGTTTTGATCTAACATCACTTTTCAAATatgtcgaaa
aaaaatatatcattatATTTAATGAATAATCAAGCTGGGCGTGAACATTT
TGATTAATTGATAAACGAATGTACAATAATAAGATAATAATAATACAATA
GTACGATAGTACAATAATAAAAAGTTAACTTTGCATAACCCAAATCACAG
CCCAAGGGGAGCTTTAATAGCCCAAAAATTAACATTTCGtaaatttctct
caaaatgtTATACCCATACACAAAGATGAGGCCAAACATACAAATAAGAC
TTTTGTATCCCACAACAAAAATAGAAACTgctaaaaattttcagaaaaaa
aaacattttaattgttCATTATActgataaaaagaaaatcaacataTTTC
TAGAAAATTAATTTCCAAAGGGTCGGTGACATAGGATTATACTTCGCTGA
TCTAATTAAAGAGTTAAATTAACATACaatgagaaaattgaatataaaaa
cGTGCTGAAAGTCTGGCtgagtatgaaaataaaaacatcagaaCATATTA
AGCTAGATTTTACTGAAGTTCATACTTGTGAATCTTTTAATGAAATTGTA
AATCTTTTGAGTTTGGTGGTTTTCATTTGGACCTTTATAATTTGATTCAA
ATTCATTTAAGGCTTATAATAATACCTAGCAACTAAGAAAATGATATATA
TTTCATTCCTCTTGGGTAGGTTCTGTTGTTGGATTTTTTGTGTCTGTATC
TGTCGGAATATTTTCAGTTCCATTTTCTGTTAAGTTTTCCAGATTATCAG
GCACAGCTTTAGCTCGCTTATTTGCTCttgattcttttctttttaaaact
gaTGGATCTACCAAAGCAATGGCATCATCACAATAATCTTGAAGCTCCTC
AGCCGTTCTTTTGATATTCTCTGCTATTATTTGATCACATGTTATTTTGG
TTTGAATCGTTAAGCCATCCTTGGTGTACTTCACAGGGAAAGAATAAATG
AGCCCGTCAGGAATGCCAAATGAACCATCAGAAATAACACCAAGggaata
aatttcattttttttatcagCCTGAGAAAGTAAATCTTGCAATTGAGAGA
TAAAAGCAGCTGTAAATGATAATTTGTGTGATGTTAAATGTAATTTTTCA
TCGTTCAGTTTTTCAGGGAGCTCGTTATCTAAAAACTTCTTGTTATATAT
TATTTCACTGACCGAATGTGAAAACTTGTTGATGTGCGGTGCCCAGATTG
CACCATTGTATCCTTGTGCTGTCGCAATGCTATAATCGGTAATGTATTCC
TTAGAGCTGCCCCATAGAATCAAGTTTTTCACGCCAGCAGAATTCACATC
TAAAACCTTTGCAACTGCAGATTTTCCAATGTTCTCTTCAAACCGAGTCA
TAGCCATCAAATTTTTCCTTTGGATACCATTTAAAAAATAGTGAATAATG
TTTGAACAAATTATAGCATTTTCCCCGATTACTAACATTTTAGTTGTGTt
gtttaaacacttttttaggTTGGATGCAATTTTTTGTAGTTGAGATACAG
CACTTCGATCCATCTCCTTGGTTGTATTTAAAATGACAATAAAATCTGCA
TTTTGAAAAGAATCTTTCAAGACAGAGGTTGCTGTTATTTCTCGTACTTC
AAGCTCTGCACAATCTTGAAGCTCCATGACTAAACCATTAATTTTCTCTT
GTACATTTTCACTGTTGTCGTTGTAATGTAGAGAGATTGAAACCTCCTGT
TTTTCTCCGAAAATATCCTGTCTTATCATCAGTGGCAATGCATGGTATGC
AACATCAGTGTCAGCACTCGTAATAGCAATCTTAAAGGGATTAATTGCTG
CGTTGAGTTGTTctgtttcttcttcattttgttcttttgttgtcTTATTT
TCACCCGAGATTATATTCAAGTCTGGTGTTGGATTCTTGCAAGTAATTCC
ATAATAACCTTTTGCATATTCTAGAAAATCATTACAGCTTCCAAGAAGTG
TACCTTTCCCTCCTCTATTGATCAGTTCTCTCCATATGATTGGTGATTGA
CCAGAGTAATTCCAACCTTTTTCTGAACATGTGGACTTTACCCAATCTTT
CCATTCGGATGGACTCAAAACAATTTTGTGTACGTTGAAATTAGGAAGCT
TGAGAGTTAATTCATCTGCAAGAAGCTCTGCTCTGGCATAAAATGGACAG
TCAGATTTGCCTGCAATAACAAATTTCGCCATGGTTTTTTCCAGCACAAA
GACAACCTCTTCCCCACCACTGACCACAGCTCCTTGGCGCTatgtttgaa
tattttgattattttgtatCCATGGGATTTTAATGCTGACTCTGCTAAAC
Coding sequence (CDS) from alignment at scaffold_167:718379..720778 >TCONS_00050168 ID=TCONS_00050168|Name=TCONS_00050168|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_167:718379..720778 (Clytia hemisphaerica)
TCATTCCTCTTGGGTAGGTTCTGTTGTTGGATTTTTTGTGTCTGTATCTG
TCGGAATATTTTCAGTTCCATTTTCTGTTAAGTTTTCCAGATTATCAGGC
ACAGCTTTAGCTCGCTTATTTGCTCttgattcttttctttttaaaactga
TGGATCTACCAAAGCAATGGCATCATCACAATAATCTTGAAGCTCCTCAG
CCGTTCTTTTGATATTCTCTGCTATTATTTGATCACATGTTATTTTGGTT
TGAATCGTTAAGCCATCCTTGGTGTACTTCACAGGGAAAGAATAAATGAG
CCCGTCAGGAATGCCAAATGAACCATCAGAAATAACACCAAGggaataaa
tttcattttttttatcagCCTGAGAAAGTAAATCTTGCAATTGAGAGATA
AAAGCAGCTGTAAATGATAATTTGTGTGATGTTAAATGTAATTTTTCATC
GTTCAGTTTTTCAGGGAGCTCGTTATCTAAAAACTTCTTGTTATATATTA
TTTCACTGACCGAATGTGAAAACTTGTTGATGTGCGGTGCCCAGATTGCA
CCATTGTATCCTTGTGCTGTCGCAATGCTATAATCGGTAATGTATTCCTT
AGAGCTGCCCCATAGAATCAAGTTTTTCACGCCAGCAGAATTCACATCTA
AAACCTTTGCAACTGCAGATTTTCCAATGTTCTCTTCAAACCGAGTCATA
GCCATCAAATTTTTCCTTTGGATACCATTTAAAAAATAGTGAATAATGTT
TGAACAAATTATAGCATTTTCCCCGATTACTAACATTTTAGTTGTGTtgt
ttaaacacttttttaggTTGGATGCAATTTTTTGTAGTTGAGATACAGCA
CTTCGATCCATCTCCTTGGTTGTATTTAAAATGACAATAAAATCTGCATT
TTGAAAAGAATCTTTCAAGACAGAGGTTGCTGTTATTTCTCGTACTTCAA
GCTCTGCACAATCTTGAAGCTCCATGACTAAACCATTAATTTTCTCTTGT
ACATTTTCACTGTTGTCGTTGTAATGTAGAGAGATTGAAACCTCCTGTTT
TTCTCCGAAAATATCCTGTCTTATCATCAGTGGCAATGCATGGTATGCAA
CATCAGTGTCAGCACTCGTAATAGCAATCTTAAAGGGATTAATTGCTGCG
TTGAGTTGTTctgtttcttcttcattttgttcttttgttgtcTTATTTTC
ACCCGAGATTATATTCAAGTCTGGTGTTGGATTCTTGCAAGTAATTCCAT
AATAACCTTTTGCATATTCTAGAAAATCATTACAGCTTCCAAGAAGTGTA
CCTTTCCCTCCTCTATTGATCAGTTCTCTCCATATGATTGGTGATTGACC
AGAGTAATTCCAACCTTTTTCTGAACATGTGGACTTTACCCAATCTTTCC
ATTCGGATGGACTCAAAACAATTTTGTGTACGTTGAAATTAGGAAGCTTG
AGAGTTAATTCATCTGCAAGAAGCTCTGCTCTGGCATAAAATGGACAGTC
AGATTTGCCTGCAATAACAAATTTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050168-exon-scaffold_167-1491911889:718379..720778 | TCONS_00050168-exon-scaffold_167-1491911889:718379..720778 | Clytia hemisphaerica | exon |
| TCONS_00050168-exon-scaffold_167-1510915933:718379..720778 | TCONS_00050168-exon-scaffold_167-1510915933:718379..720778 | Clytia hemisphaerica | exon |
| TCONS_00050168-exon-scaffold_167-1575043694:718379..720778 | TCONS_00050168-exon-scaffold_167-1575043694:718379..720778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:718379..720778 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016040 | NAD(P)-bd_dom |
| IPR015955 | Lactate_DH/Glyco_Ohase_4_C |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0016616 |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Blast
BLAST of TCONS_00050168 vs. Swiss-Prot (Human)
Match: MDH1B (Putative malate dehydrogenase 1B OS=Homo sapiens GN=MDH1B PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 4.391e-59 Identity = 149/459 (32.46%), Postives = 243/459 (52.94%), Query Frame = 2
Query: 119 MAKFVIAGKSDCPFYARAELLADELTLKLPNFNVHKIVLSPSEWKDWVKSTCSEKGWNYSGQSPIIWRELINRGGKGTLLGSCNDFLEYAKGYYGITCKNPTPDLNIISGXXXXXXXXXXXXXXXLNAAINPFKIAITSADTDVAYHALPLMIRQDIFGEKQEVSISLHYNDNSENVQEKINGLVMELQDCAELEVREITATSVLKDSFQNADFIVILN--TTKEMD------RSAVSQLQKIASNLKKCLNNTTKMLVIGENAIICSNIIHYFLNGIQRKNLMAMTRFEENIGKSAVAKVLDVNSAGVKNLILWG--SSKEYITDYSIATAQGYNGAIWAPHINKFSHSVSEIIYNKKFLDNELPEKLNDEKLHLTSHKLS--FTAAFISQLQDLLSQADKKNEIYSLGVISDGSFGIPDGLIYSFPVKYTKDGLTIQTKITCDQIIAENIKRTAEEL 1459
MAKFVIAG++DCP+YA+ EL+AD L LP+F +HKI P W+DW+K C + W++ SPIIWREL++RGGKG LLG N+FLE+A+ YY +T T + +I+ EN + E+E E L INP ++ ITSA Y+ +P++ ++FG E+SI+L N +E E + LV+E QD A +R ++ + ++++F+ A IV+L+ T KE+ RS V + ++K + + +++V G + ++ N++A+ E K+ +A+ L + +K++I+WG S Y+ D Y AIW P +S V +I++ +++ E L + L T + A I+ EI SLG++S+G FGIP G+++S PVK+ + T + +I + + R +L
Sbjct: 1 MAKFVIAGRADCPYYAKTELVADYLQKNLPDFRIHKITQRPEVWEDWLKDVCEKNKWSHKN-SPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQEEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAE---EHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYGYLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRIAHNIIAVALGVEGEAKAILARKLKTAPSYIKDVIIWGNISGNNYV-DLRKTRVYRYESAIWGPL--HYSRPVLNLIFDSEWVKREFVAILKN--LTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKDVEISEQIMTRMTSDL 450
The following BLAST results are available for this feature:
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