TCONS_00004930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004930
Unique NameTCONS_00004930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004930 ID=TCONS_00004930|Name=TCONS_00004930|organism=Clytia hemisphaerica|type=transcript|length=1545bp
ccctgcggggcccaaggcgccgagtatgcacccggcacagtgacaagccg
ttactagcaaccctgacctaaacaatcccaaacagcaaaacccccggaaa
atgtaaaatgtcggaatgagcaatagccgatcacattttggaggtttgtc
ttttatgttttcCTTTGGGTAAAAGTGGAACGGAGCCACCCAAATTCATT
TcataaacaaaattcaaaatggcgttcTCTGCAGCAAGATCACATGGAAA
CCTTGTGAGCATTTTGAGAAGTACAGTgtcaaatctttgcttgcttcaAA
AGGTTGAGAAGACAGCAATCGTCTGTGGATGTAGCTACATTCAGACACGT
AAATTTAGACCTTATTCTGTCATACCAAAGAAGTATTTGAAGCGAAAAAA
TAGAGACAAAAAAGATAGAGATGAtgtttattttttgactgaCCAGGTTG
ACCCAACATACTCCGTGGATGATGCTGTCAATATGATAAAAGCTTATGAC
TTGTTTGGTAATGAAAAACTTGATCTATTGCTGAATATGAATCTTGGAGA
AGGGAAGAATAAAGTTGCTGTCTTAAAAGGTCTTGTTCATCTCCCAACAC
CTGTCACTGAAAGTCAAAAAGTTCTTGTATTCGCTGAGGGTGAAGATGCA
GTGAAAGCAAAGCGAGCCGGTGCTACGTTCGTCGGTGGAAAAGAACTTAT
ATCCAAGgTTGAAGAAGGAGAACTGGAATTCGACCATTGCATTTCCACTC
TTGATTTTCTTCCCAACATTAAACATCTCCCAAAAATACTCCGCAACAAA
ATGCCTAACACAAGGCGAGGTACTGCAACAAATGATATCGAAGaagcctt
gaaaatcttcagTCACGGAGAAACGTATATGGCGGATAACACTGGGAAAA
TGAGACAAACTATCGCTCTTTCCAATTTTTCGAAAGAAGAGATCGAAgga
aatttgaaagaaatcatgaaagctgtCGATTCTCACAAAAAAGCTGCTTC
TTTAACCACAGaaaaattttacaaacATGTCAGCTTAGCGTTGCCCGCTG
GCCCCAAAATcgatttgaaaatttctgaagtCACTCCAGTGTAAGAAAAG
CCAATTCATCGTTGATTTTCGTTATTGACTTATTGGACTTGCGTCGCGCC
ACACCCAGTTACGTGCCCATCGATCTCTTCACATCACTCGATAAAGATGG
CGATAAAGCACTGTCCCGTGACGAAATCTCCGATTATGTTCGATACCAAT
CGAAGATTTATCGAAAGAAAGACGCACCGATGCCATCGCACGACGAACAC
GAGAAGATGGTGGACGAAATTATGCAGAAAGAGGATAAGAACGGAGATGG
TGTCATCCAGCATAACGAGTTCAGTGGACCCAAAATCCCTCATGGTGGTG
AactataaacatttttttctatcttagtctttttttgtgtgtttgtttGT
GTAGTTTGATTCATTTTGTATACTTTCATttcgatttttgtattttttgt
tcacttcatcaaaaaaagatatcaaaTGTTAAATCTCAAGATTTC
Run BLAST on NCBI

protein sequence of TCONS_00004930-protein

>TCONS_00004930-protein ID=TCONS_00004930-protein|Name=TCONS_00004930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MAFSAARSHGNLVSILRSTVSNLCLLQKVEKTAIVCGCSYIQTRKFRPYS
VIPKKYLKRKNRDKKDRDDVYFLTDQVDPTYSVDDAVNMIKAYDLFGNEK
LDLLLNMNLGEGKNKVAVLKGLVHLPTPVTESQKVLVFAEGEDAVKAKRA
GATFVGGKELISKVEEGELEFDHCISTLDFLPNIKHLPKILRNKMPNTRR
GTATNDIEEALKIFSHGETYMADNTGKMRQTIALSNFSKEEIEGNLKEIM
KAVDSHKKAASLTTEKFYKHVSLALPAGPKIDLKISEVTPV
Run BLAST on NCBI

transcript from alignment at sc0000049:645162..655628-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004930 ID=TCONS_00004930|Name=TCONS_00004930|organism=Clytia hemisphaerica|type=transcript|length=10467bp|location=Sequence derived from alignment at sc0000049:645162..655628- (Clytia hemisphaerica)
CCCTGCGGGGCCCAAGGCGCCGAGTATGCACCCGGCACAGTGACAAGCCG
TTACTAGCAACCCTGACCTAAACAATCCCAAACAGCAAAACCCCCGGAAA
ATGTAAAATGTCGGAATGAGCAATAGCCGATCACATTTTGGAGGTTTGTC
TTTTATGTTTTCCTTTGGGTAAAAGTGGAACGGAGCCACCCAAATTCATT
TCATAAACAAAATTCAAAATGGCGTTCTCTGCAGCAAGATCACATGGAAA
CCTTGTGAGCATTTTGAGAAGTACAGTGTCAAATCTTTGCTTGCTTCAAA
AGGTTGAGAAGACAGCAATCGTCTGTGGATGTAGCTACATTCAGACACGT
AAATTTAGACCTTATTCTGTCATACCAAAGAAGTATTTGAAGCGAAAAAA
TAGAGACAAAAAAGATAGAGATGATGTTTATTTTTTGACTGACCAGGTTG
ACCCAACATACTCCGTGGATGATGCTGTCAATATGATAAAAGCTTATGAC
TTGTTTGGTAATGAAAAACTTGATCTATTGCTGAATATGAATCTTGGAGA
AGGGAAGGTATACATAGGTAGACTTTTCTATAGTTCTATAGACCTTTTCG
CCTTTCCATCCCGCCATCTATCTTGCAGTCTTGAATTGTATGCAAAAGTA
CAGGAACAAAAAAGCTGTAGTTTCTATTTCTATTTGGTTGAGTTGCAGGA
GGCTTTAGAGGCCTATTCTCGCAACTATAGACGCTTTCTAATGAGCGTCC
CGTCCGCACTTTGAATTGACTATCACCCAATACACCGTTTAGGAGTCTCG
CTATTTCACGGTACTCCATTGCAGAGGCCCGGTAAAAATGGTAGGTAAAA
ATGCGCACTTTAGTACTGTGAAAGGTTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGAAAAGAAGTTATGATTAA
AAGGAGTTCTTTACCTACCGTTTTTCTGCTATGTTTCCTTATGAGAACCA
GATGTTTACCTACCGTTTTTTTGCGGAGAAGAGTGAATTTTCCGTGATCG
CTAAAATCAAAACAATGGAAAATTGGATTGACGCGTGCGCAGTCGACACT
CCTAAACGGTGTATTCCCCTCACATACGATGTTCGGGCCAAGAGACCCTA
TCAATTCTTTTGGCCCGAACATGACCCTAGTCATTCAGGCCATGTTCGGG
CCATGTTCAGAAGATTCCATATTTAAATTGATTCAGCATGTCCAGTCAAA
CAAAATAAGATTTGTCTGTTTTGTTTATATCACTCAAAAAAACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGAGAAACCAA
GTTTTTCTCAAAGAAAATGTTAAAAAATTCAGTCCTGAAATTACACGCCT
GTTTAAATCATGTTTTCAAAAATTGGCCCGAGTGTGGCCCGTGCGTGGTC
CGCGTGTGGCCCGAATTCTCGGGCCAGCTCAGGCCATACTCGGGTTAACC
CGGGCGAAGGAACGTTCACTTGCCAAGTGAACTGCCGTGAGTGGGAATTG
AACCCTGGCCGCCTGCACAGAAGCCAAGGTCGACTACACTATACTACGGC
ACCTTTTTTGGTTGGATTTAGTTGGAAAATATGCAAAACATATGCAAGTT
TACACAAAGATTAAAAGACAACAAAGCATTTTATAAAGAAATATTACAAT
TATTAGAACAATAAAAGATGGAATTTCGTAATCCAAGAAGAAATATTTAC
AGAACAACAAAAGCCTTCTAGAAATTTGTTTTAAAAGACAGCATATTCTG
TTTTCATGCCATTAAAAAATTCCACGATGACGGAGTACACACATCAACTT
TCAAAACACGCAAACTGAAAGCAGTAATTATCAGGGTGGCCACTAGTCCT
GGAAAGTCCTGGAAAGTCCTTGAAAGTCCTGGATTTTGTTTTAGTCCTGG
AAAAGCGTCCTCAGAAAATTGGTTAAAGTCCTGGAAAAGTCCTGGAATAT
TTTTCCTTGTTAGTCCTGGAATTTTACCTTTCTCTATAAGCGATCAAGCG
TGAAGGAATTTGTATTCTAATCAGATATTTATTGCTTTTATTTTCTGTAT
TCTAATATCTGTGTTTGTAGAAGTCATAAATATTGTCAAAATCGTCAAAC
ATAATGGCATACTCTCGGGTACGGATGGACGGGGTTTGGAATTAAGCGGT
TGGAAAAAATCTCAAAATCTAATCAGGGAGGTTGGAATTAAAATGCCTTG
GGTGGAAAACTTTGGAAAAGCAGGCTAATACAGAAGAATTAGGGCAAAAG
AGGGAACTATCAAAAACATTTCCCCAAAACTTAATTAGCAGGGGGTGGGG
TGGAATAAGAATGTCATGGGTGGAAAATTTTTCAAAAAGTTAATTAGCGA
GGGGTACACTTATTAGGTACCCAAGAGTAGTTTGGCTAAAAGCCAAAAGC
ATTATCGTCTAAAAACTGGTTCCTACATGAGACACTTATAAAACACCAGC
TTTATGAATACACCCATTGAAGTTTTTCAAAATATCACGTCCTATCTTCG
AAAATATTATCTAGTTGCGTTTCAAAGAGATAATCCTATGTTTCTGTTTC
TAAAAAAGTGATATTTTCCAATTGTTGATGAAAACGATGATGCACCACTA
AAATTGTTTAAGTTGGCTTTTTGGGGGGAGAAAGNATATTATCTAGTTGC
GTTTCAAAGAGATAATCCTATGTTTCTGTTTCTAAAAAAGTGATATTTTC
CAATTGTTGATGAAAACGATGATGCACCACTAAAATTGTTTAAGTTGGGT
TTTTGGGGGGAGAAAGGGGAAAGGGGTGCCAAAACTTTTTTGTTAAATCT
TATTAAAAGTTGGACTTTGTGCGTCTTAAACTGCGCCCTGAAATCAATTT
TGGTGAAATAAGTTTTCAAATCTTTCATGCTCGCTTTGCTCGCAATAAGA
TTTTGGTAATTTTTTTGAAATCTAGTTTTGCAATTTTTTTTGACAATCTA
GCAGTTTCGAATGGTAATCTTAATGTGCGCCCCATGACCAATTAGCTGAA
TGCAATTTAAAACATATAACCCAATTTTTTTCACTCGAAAAGTAATTCGA
AATCCGTATTGGTTACTTTAAAAACAAAAATACAAGAGTAATGTACGGTT
AACTCTCACTTTACAAAATCTTTGTCGCCTCAAAATATCCTCAACAACTA
AGACAATTTGTAAGATTCTTTTTAAAGCTATGTGATTGTCTATGCAAATC
TTCTTTATTGGCCCAGCTAGCTTTAGCGTAGTGGGCCTTTCATTAGCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATTTGG
CTGAGCCTGGATGTGCTTATTTTTTTAGCAATTTTCAGTCTAAAATGTTC
TTAAATGCGTTCTTAATTTTTCGGACTACTTTAAATCGACAACATCATGC
AAAATAAAGAGCTCTTAAAGTTGGTAAAATTTGGACAATATTTGACTCTC
GATTTTAGAATATCCATCCCTAAGTTTGGTTAAAACTGCTTGAAAAGAGG
AAAGAATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGT
TCTTACGATGTTCTTAATTTTTCGATGAATTTCAGCCTAAATGTTCTTAT
AAACTGGGTTCTAATAAAGAAAAAAACGTGTAGTACGTTTTTCTTCATTT
TAGGAATATGTTCTTTTAAAAAAGTTGTTTTTACATTTCTCTATCATGTG
AACAGTTCAGTGAACAGTTCAGTGTTCAGTTGTTCACGTGCTAGGAACAA
AACACTTCTGTATATAAGATTAAATATTTTGATTTATTTCTCATTGTTGC
TAATAAGAGATAGGCGAGTGGTTTAAGGCGTCTTTGGCTTGTACTAGCGA
CTTTAGGCTCAAATCCTCTCTGTTACTTAAGTCTTGTTCAGTTCATATTT
TTATTCGCTGGGCCTTCATGCCCTCTGGTCTTCTTTTCTTCTTGGTTAAA
ATCAAATTGGCCCATTCTCTATTTCGTTGCTTTGGAGCAAGTTAGAAAAA
GCTTTGCACCTCATTTTTGCGTTAATATTTTTCACATACATAGCTCAGTT
CCGAGAGAAAATGCTTTTCTTTTAGGATAAAAAGTCCTGGAAAATTTTAA
AAACATCCTGGAAAATTTCTTGAAAAGTCCTGGAATTTGACTTGATTTTT
TGAGTGGCCACCCTGAATTATGATGTCACACATTCAGCAGGTTCAGATCA
ATGTTTTGATTTGATCGTTTGGCGGTTCTATTCCCAGGAGAATAATTTAC
CGTCAGCCGAATAAGGAATATTTTTGTACTTTCGCAGGTGATTTTTCAGC
TTGAGTTTATGTCTAATGTTATGGTTTTTTGAAGTGCTTGTTCTAAAGAC
ATGAGCGAATTTGATTATTTCTAGTTTTCAAAAGAAGCAGATTTATCTTT
CTTCTACAAGATTACACTTTAATATAATGCCAATTATGCATGTAAGTTTT
ATAATAATACTTGCTTTTTGCATATATTTTGCATACTTTCTAAGGGAATT
TCACCATGGCCACCATAATTTTTGCATACAATTCAATATGGCAGATGGAA
AGGTGAAAAGGTCTTTTTCCATACTATTACTGACACACAAGTGTTACGCG
TAAGCCAAATCGCGTACTACGAACAACCTCTAAACTGCCGAGTACAGGAG
AAAAAAAATTGAAATTCAAAATAGCGGCCAAGCCCACGCTGATAACTTGA
AGGCAGCATAGATCTCAAACCTCAAATCTACGCCGGAGATATCCGGCGCA
CAAGCCTCAATTTCCAGACTGGATTGCAGCTCAATAAATCAATGAAATAA
TTTGAAATAAAAAGTAAACAAACCTTGAACCTTTCATGAATCCAAATAAA
TAAAAGTATTCATCTAAAGTGAAGATTACATTTCAAAATAAAACGATTTT
CAAACCAACCTAAAGTCAGTGTCTGCCAACTAAAAATTTCTCTGCGGGGT
CACTGGCAAGGAGTTACGACTTCTGGTATAAGTCTAAAATACCAATCAGT
TTCATTCTGGAAATAGAGCAATTATGGGCTCAAAGTGTCAAAAAATAAGA
ACAGTAGACAGCAGTAGAGCCTCTTCAAAAGTTTACTGGTTTTCGTAAGA
AATAGCTAATGTTAATTTAAAAGATGTTGGAGGAGTTTCAGGGTGAAAAA
ACCTGCCTGAATCGGATACCAAATTAGCCTGGGTAAAGTAATTGGGTTTT
ATGTGCATGAAGATAATGGTTTCTATTGATTGTTTGTTTCAGAATAAAGT
TGCTGTCTTAAAAGGTCTTGTTCATCTCCCAACACCTGTCACTGAAAGTC
AAAAAGTTCTTGTATTCGCTGAGGTAAGACCAATTATTCTCACCTTTCCT
GATTCAAACAGTTAACTCAAAATGATTTAAAAGTAATAGACACTCTGTTT
GTAGAAGACAACTTAGTTTTTTCTGCTTGTGGATTATTTTAAAATAGTTT
TGGATTCCTGTCAGGAAGAATGAATAGAATTTTTTTTTTTTTCAACATGG
ATCTGTGCTAATGTGAAATCTTACTAAACGATTTGTTTTGGCTTGTTTGT
CTTAATTGAAGTTAGTTGTATGATTGTGTTGTTAGGGTGAAGATGCAGTG
AAAGCAAAGCGAGCCGGTGCTACGTTCGTCGGTGGAAAAGAACTTATATC
CAAGGTAAGTAATACCCCAAGGTCACCAAAAGAACAAGCTGTTTGGTTGA
AAGGGAAGGGTTCCAGTCTGATCACTGATTTTAGAATTTAATCTCAATTA
TCTGGAAAGAATTGCGGTTAGAATGTGTATATAACGAACCTATCAAATAT
AAATCAAATAAAAAAGACACAATGTCTATGTTAAGGTTGCTAGATGGATA
ATCCAATGAATAACATTGGGCGATTGGAGGGAGCTAATTGAAAATGAGCA
ACTTCCCTCCAAGCGATCTCTTTATTTCAAATCTTTACAAAATGCTTTGA
ACCTTAAAATTCAAATCTGGAAATCTGAGGTCACGGAATATCTCAACATA
CCTTCGATCCCTTCATTCGTTGACCTATGAAAATTAATTGAAAAGGCTTC
GAATGAGATTTTAAAGACTAGGTTGGAACTTGTTGTTTTACTTTTATTCT
GAAAATGAGATTTTTCCCTCTAAAGAACATTTGATTTTTTTGCAGGTTGA
AGAAGGAGAACTGGAATTCGACCATTGCATTTCCACTCTTGATTTTCTTC
CCAACATTAAACATCTCCCAAAAATACTCCGCAACAAAATGCCTAACACA
AGGCGAGGTAATGCATCTTTTAATTGTTTAACCCTGTTTGTTAATCTTAT
GACGGCTTACTGCTTTTTAAAGACACAAGTTTTTAACAAATTTCACTTTA
ACCACAAATATAATTTTCATGAGATTATCATTCGGTGAAGTAAGCGTCAA
TCGCTAGGGTTATATTAAGATCGTCTCATCTTCTTTGGAGAAGTTGCATA
TGAAAATCCCTCAATTTAGAATTTGAGGGCAAAAAAAAATGTTATGTGAC
GGAGGGACGGTAGAAATGATATTGTGTATCTGGCTTTAAAATATTTTGCA
AAGCACCACTGCAGATTTGATATCAGACGACGTAGATACTAAGCAGAGTC
TATTTATATCCTATTATTTTTCTTGTACCGACAATGATTGGCTCTCGGTC
CGGAGTAAATACCTTTGCGTTTTTCCTTATATTTGCTGTCTTATGATTAT
ATCTCCATTAATATAATATGTCGATGTTTTATGGGTAGAATGTTTTGAGT
TGTTTACGGAAGATTTCCTTATTATATATGCAGGTACTGCAACAAATGAT
ATCGAAGAAGCCTTGAAAATCTTCAGTCACGGAGAAACGTATATGGCGGA
TAACACTGGGAAAATGAGACAAACTATCGCTCTTGTAAGTTCTTTCATCA
TTATAAGTTTACGAGTGAATGTGTGTTTTGAGCGGTATTCTTTGTAGGCC
TTTCTTTATTTGAAGATTAGTTTCTCTTGGAAGTGGTGTGTCCAAAACAA
AACTGATTTTGTTTTTCTTCGTTGTTTTAGTTTTTTTATCATTAACAATT
TCTTTCTATTTTTCTTGTAGTCCAATTTTTCGAAAGAAGAGATCGAAGGA
AATTTGAAAGAAATCATGAAAGCTGTCGATTCTCACAAAAAAGCTGCTTC
TTTAACCACAGGTACGTAACTACACCGTGTACACTCGCCATTGCAAAGCG
TACTATAATTAAGGCGAACCCCTAAATTTCGATGTTGTGCCTAAAATGTT
AAAAGGGGAATCTGCGATATACATAGTCTAGGGATAAACGTTTTTTTCTG
CATTTTTAAACGGCCTGTGCAAGCAATCGCTGCTCGTGTGCAAGCAATCG
CTGCTGACAGAGATTACTAGCATTATAATAAAAGTTAAAATCTTTTTCTC
TTGTTTTTTCAACAGAAAAATTTTACAAACATGTCAGCTTAGCGTTGCCC
GCTGGCCCCAAAATCGATTTGAAAATTTCTGAAGTCACTCCAGTGTAAGA
AAAGGTATGTGATTTCGTTTTTCATTTGAAATCAACGTAGATATATGTTT
TGTTTTAAATTTTTAAATTTTTCCAAAGCAAAATTAGCGACCAATTTCTA
ACAAAGTATAGTAAGGATTGATTATTAATTTTTTATTATCGTAAGCATAA
ATTGAAAACAAAACAAAAGTAAAGACTGCACTTGATAGACAAGGAGCCTT
GTTTAGACTGCTTTTTGCGGATTATACTCAATTACGTCGTAAAACAAGAA
AACAAGTTGTTTGATAAGTTTAGTTACTTATTTGCTGCATGATAGTGAAA
GTTTGTTGGAAGTGTTTCATCAGCCTTCAGTTTGTTTCATGCTCAGCAAA
CACGTATCTTTACTCTGCTTGTAATACGTGTAACAAAACAATGTTTGGTC
GACGTGTCTCTACCGCCTTCGACGCTGGTTCACTTTATCAGTGGCCACTG
TTTCGCACAATATCTCATTTCTTGGCGAGGTAACATCTCTTGCAGTGGTT
GTTAGATAAGAAGGAAAATGAAGAGTTTGTTCTCGTTATTTGCACTTTGT
GTGTTGTGTTGTTTTGTTCGTGGTGAGACAGAGGAAGTCACCATTGAAAC
TAACGAGGATGACGGACCACAACCTTTAGTTCTGGACCCACAAGTTGCTG
ATGAATTACGTAAAGAACGAGCTGAAGAAAGGAGACACCATAAAGAAGCA
GTGGCTGAACACAACAAAACAACTGAAGCAAAGCCTGAAATCATCACATT
GTACCGGCCAAAGATTTGTAAACGACAATCTAACCGTGGTGATTTAATGG
TAGTCCATTACACCGGATGGTTGGCCAAGAGCGGACGCAAATTTGACACC
ACTATTGATCTGAGACGTCGTTATGCACCCTTTGAGTTCGTGGTTGGAAC
TGGTTACGTCATCAAGGGATGGGATAAAGGTCTTATGGACATGTGTCCTG
GAGAGAAGAGAAAGTTAGTGGTACCACCATCGTTAGGTTATGGAAAGAAA
GGACTGAGAGGAACTATCCCACGTGAGTTGTTGTTCACATTCTTTTCTTG
TTTAGTAGTTATAGAATTNGGGGGGTCCTAATAAGGTCCAGGGGTTTGGA
AAAATGAAACAAGCGGGGGGGCGTTTATTTGGAACCTAAGAGTATATGGG
TTGGAGGGGGGACTTCGAAAACAAAATATTTTAAAGGGCGCCAAATTTTG
GCTTGGTCACCCCACCACGCACCCCATATTACAACAATCTAATCCTCATT
CGAAATGAGGTGACAAAATGTCCTTCAAGATTGCCCACCTGCTTTTTTTG
CTTATTGATATTGACTTTGGTATTTTGATTCAAACTTTGTTTAAACCCTC
ACACGAGTGACAGTGCATTTTTCTTGCATATTTTCACTGCTTCCATAAAT
CTTTCATCCCCTTACTTTCAACAGTTATTACGGGATTTTTCAGTAATTTT
TCTTCTTCCTTTTTTTCTACAGCCAATTCATCGTTGATTTTCGTTATTGA
CTTATTGGACTTGCGTCGCGCCACACCCAGTTACGTGCCCATCGATCTCT
TCACATCACTCGATAAAGATGGCGATAAAGCACTGTCCCGTGACGAAATC
TCCGATTATGTTCGATACCAATCGAAGATTTATCGAAAGAAAGACGCACC
GATGCCATCGCACGACGAACACGAGAAGATGGTGGACGAAATTATGCAGA
AAGAGGATAAGAACGGAGATGGTGTCATCCAGCATAACGAGTTCAGTGGA
CCCAAAATCCCTCATGGTGGTGAACTATAAACATTTTTTTCTATCTTAGT
CTTTTTTTGTGTGTTTGTTTGTGTAGTTTGATTCATTTTGTATACTTTCA
TTTCGATTTTTGTATTTTTTGTTCACTTCATCAAAAAAAGATATCAAATG
TTAAATCTCAAGATTTC

Coding sequence (CDS) from alignment at sc0000049:645162..655628-

>TCONS_00004930 ID=TCONS_00004930|Name=TCONS_00004930|organism=Clytia hemisphaerica|type=CDS|length=6132bp|location=Sequence derived from alignment at sc0000049:645162..655628- (Clytia hemisphaerica)
AAAAATTTTACAAACATGTCAGCTTAGCGTTGCCCGCTGGCCCCAAAATC
GATTTGAAAATTTCTGAAGTCACTCCAGTGTAATCCAATTTTTCGAAAGA
AGAGATCGAAGGAAATTTGAAAGAAATCATGAAAGCTGTCGATTCTCACA
AAAAAGCTGCTTCTTTAACCACAGGTACTGCAACAAATGATATCGAAGAA
GCCTTGAAAATCTTCAGTCACGGAGAAACGTATATGGCGGATAACACTGG
GAAAATGAGACAAACTATCGCTCTTGTTGAAGAAGGAGAACTGGAATTCG
ACCATTGCATTTCCACTCTTGATTTTCTTCCCAACATTAAACATCTCCCA
AAAATACTCCGCAACAAAATGCCTAACACAAGGCGAGGGTGAAGATGCAG
TGAAAGCAAAGCGAGCCGGTGCTACGTTCGTCGGTGGAAAAGAACTTATA
TCCAAGAATAAAGTTGCTGTCTTAAAAGGTCTTGTTCATCTCCCAACACC
TGTCACTGAAAGTCAAAAAGTTCTTGTATTCGCTGAGATGGCGTTCTCTG
CAGCAAGATCACATGGAAACCTTGTGAGCATTTTGAGAAGTACAGTGTCA
AATCTTTGCTTGCTTCAAAAGGTTGAGAAGACAGCAATCGTCTGTGGATG
TAGCTACATTCAGACACGTAAATTTAGACCTTATTCTGTCATACCAAAGA
AGTATTTGAAGCGAAAAAATAGAGACAAAAAAGATAGAGATGATGTTTAT
TTTTTGACTGACCAGGTTGACCCAACATACTCCGTGGATGATGCTGTCAA
TATGATAAAAGCTTATGACTTGTTTGGTAATGAAAAACTTGATCTATTGC
TGAATATGAATCTTGGAGAAGGGAAGAAAAATTTTACAAACATGTCAGCT
TAGCGTTGCCCGCTGGCCCCAAAATCGATTTGAAAATTTCTGAAGTCACT
CCAGTGTAATCCAATTTTTCGAAAGAAGAGATCGAAGGAAATTTGAAAGA
AATCATGAAAGCTGTCGATTCTCACAAAAAAGCTGCTTCTTTAACCACAG
GTACTGCAACAAATGATATCGAAGAAGCCTTGAAAATCTTCAGTCACGGA
GAAACGTATATGGCGGATAACACTGGGAAAATGAGACAAACTATCGCTCT
TGTTGAAGAAGGAGAACTGGAATTCGACCATTGCATTTCCACTCTTGATT
TTCTTCCCAACATTAAACATCTCCCAAAAATACTCCGCAACAAAATGCCT
AACACAAGGCGAGGGTGAAGATGCAGTGAAAGCAAAGCGAGCCGGTGCTA
CGTTCGTCGGTGGAAAAGAACTTATATCCAAGAATAAAGTTGCTGTCTTA
AAAGGTCTTGTTCATCTCCCAACACCTGTCACTGAAAGTCAAAAAGTTCT
TGTATTCGCTGAGATGGCGTTCTCTGCAGCAAGATCACATGGAAACCTTG
TGAGCATTTTGAGAAGTACAGTGTCAAATCTTTGCTTGCTTCAAAAGGTT
GAGAAGACAGCAATCGTCTGTGGATGTAGCTACATTCAGACACGTAAATT
TAGACCTTATTCTGTCATACCAAAGAAGTATTTGAAGCGAAAAAATAGAG
ACAAAAAAGATAGAGATGATGTTTATTTTTTGACTGACCAGGTTGACCCA
ACATACTCCGTGGATGATGCTGTCAATATGATAAAAGCTTATGACTTGTT
TGGTAATGAAAAACTTGATCTATTGCTGAATATGAATCTTGGAGAAGGGA
AGAAAAATTTTACAAACATGTCAGCTTAGCGTTGCCCGCTGGCCCCAAAA
TCGATTTGAAAATTTCTGAAGTCACTCCAGTGTAATCCAATTTTTCGAAA
GAAGAGATCGAAGGAAATTTGAAAGAAATCATGAAAGCTGTCGATTCTCA
CAAAAAAGCTGCTTCTTTAACCACAGGTACTGCAACAAATGATATCGAAG
AAGCCTTGAAAATCTTCAGTCACGGAGAAACGTATATGGCGGATAACACT
GGGAAAATGAGACAAACTATCGCTCTTGTTGAAGAAGGAGAACTGGAATT
CGACCATTGCATTTCCACTCTTGATTTTCTTCCCAACATTAAACATCTCC
CAAAAATACTCCGCAACAAAATGCCTAACACAAGGCGAGGGTGAAGATGC
AGTGAAAGCAAAGCGAGCCGGTGCTACGTTCGTCGGTGGAAAAGAACTTA
TATCCAAGAATAAAGTTGCTGTCTTAAAAGGTCTTGTTCATCTCCCAACA
CCTGTCACTGAAAGTCAAAAAGTTCTTGTATTCGCTGAGATGGCGTTCTC
TGCAGCAAGATCACATGGAAACCTTGTGAGCATTTTGAGAAGTACAGTGT
CAAATCTTTGCTTGCTTCAAAAGGTTGAGAAGACAGCAATCGTCTGTGGA
TGTAGCTACATTCAGACACGTAAATTTAGACCTTATTCTGTCATACCAAA
GAAGTATTTGAAGCGAAAAAATAGAGACAAAAAAGATAGAGATGATGTTT
ATTTTTTGACTGACCAGGTTGACCCAACATACTCCGTGGATGATGCTGTC
AATATGATAAAAGCTTATGACTTGTTTGGTAATGAAAAACTTGATCTATT
GCTGAATATGAATCTTGGAGAAGGGAAGAAAAATTTTACAAACATGTCAG
CTTAGCGTTGCCCGCTGGCCCCAAAATCGATTTGAAAATTTCTGAAGTCA
CTCCAGTGTAATCCAATTTTTCGAAAGAAGAGATCGAAGGAAATTTGAAA
GAAATCATGAAAGCTGTCGATTCTCACAAAAAAGCTGCTTCTTTAACCAC
AGGTACTGCAACAAATGATATCGAAGAAGCCTTGAAAATCTTCAGTCACG
GAGAAACGTATATGGCGGATAACACTGGGAAAATGAGACAAACTATCGCT
CTTGTTGAAGAAGGAGAACTGGAATTCGACCATTGCATTTCCACTCTTGA
TTTTCTTCCCAACATTAAACATCTCCCAAAAATACTCCGCAACAAAATGC
CTAACACAAGGCGAGGGTGAAGATGCAGTGAAAGCAAAGCGAGCCGGTGC
TACGTTCGTCGGTGGAAAAGAACTTATATCCAAGAATAAAGTTGCTGTCT
TAAAAGGTCTTGTTCATCTCCCAACACCTGTCACTGAAAGTCAAAAAGTT
CTTGTATTCGCTGAGATGGCGTTCTCTGCAGCAAGATCACATGGAAACCT
TGTGAGCATTTTGAGAAGTACAGTGTCAAATCTTTGCTTGCTTCAAAAGG
TTGAGAAGACAGCAATCGTCTGTGGATGTAGCTACATTCAGACACGTAAA
TTTAGACCTTATTCTGTCATACCAAAGAAGTATTTGAAGCGAAAAAATAG
AGACAAAAAAGATAGAGATGATGTTTATTTTTTGACTGACCAGGTTGACC
CAACATACTCCGTGGATGATGCTGTCAATATGATAAAAGCTTATGACTTG
TTTGGTAATGAAAAACTTGATCTATTGCTGAATATGAATCTTGGAGAAGG
GAAGAAAAATTTTACAAACATGTCAGCTTAGCGTTGCCCGCTGGCCCCAA
AATCGATTTGAAAATTTCTGAAGTCACTCCAGTGTAATCCAATTTTTCGA
AAGAAGAGATCGAAGGAAATTTGAAAGAAATCATGAAAGCTGTCGATTCT
CACAAAAAAGCTGCTTCTTTAACCACAGGTACTGCAACAAATGATATCGA
AGAAGCCTTGAAAATCTTCAGTCACGGAGAAACGTATATGGCGGATAACA
CTGGGAAAATGAGACAAACTATCGCTCTTGTTGAAGAAGGAGAACTGGAA
TTCGACCATTGCATTTCCACTCTTGATTTTCTTCCCAACATTAAACATCT
CCCAAAAATACTCCGCAACAAAATGCCTAACACAAGGCGAGGGTGAAGAT
GCAGTGAAAGCAAAGCGAGCCGGTGCTACGTTCGTCGGTGGAAAAGAACT
TATATCCAAGAATAAAGTTGCTGTCTTAAAAGGTCTTGTTCATCTCCCAA
CACCTGTCACTGAAAGTCAAAAAGTTCTTGTATTCGCTGAGATGGCGTTC
TCTGCAGCAAGATCACATGGAAACCTTGTGAGCATTTTGAGAAGTACAGT
GTCAAATCTTTGCTTGCTTCAAAAGGTTGAGAAGACAGCAATCGTCTGTG
GATGTAGCTACATTCAGACACGTAAATTTAGACCTTATTCTGTCATACCA
AAGAAGTATTTGAAGCGAAAAAATAGAGACAAAAAAGATAGAGATGATGT
TTATTTTTTGACTGACCAGGTTGACCCAACATACTCCGTGGATGATGCTG
TCAATATGATAAAAGCTTATGACTTGTTTGGTAATGAAAAACTTGATCTA
TTGCTGAATATGAATCTTGGAGAAGGGAAGAAAAATTTTACAAACATGTC
AGCTTAGCGTTGCCCGCTGGCCCCAAAATCGATTTGAAAATTTCTGAAGT
CACTCCAGTGTAATCCAATTTTTCGAAAGAAGAGATCGAAGGAAATTTGA
AAGAAATCATGAAAGCTGTCGATTCTCACAAAAAAGCTGCTTCTTTAACC
ACAGGTACTGCAACAAATGATATCGAAGAAGCCTTGAAAATCTTCAGTCA
CGGAGAAACGTATATGGCGGATAACACTGGGAAAATGAGACAAACTATCG
CTCTTGTTGAAGAAGGAGAACTGGAATTCGACCATTGCATTTCCACTCTT
GATTTTCTTCCCAACATTAAACATCTCCCAAAAATACTCCGCAACAAAAT
GCCTAACACAAGGCGAGGGTGAAGATGCAGTGAAAGCAAAGCGAGCCGGT
GCTACGTTCGTCGGTGGAAAAGAACTTATATCCAAGAATAAAGTTGCTGT
CTTAAAAGGTCTTGTTCATCTCCCAACACCTGTCACTGAAAGTCAAAAAG
TTCTTGTATTCGCTGAGATGGCGTTCTCTGCAGCAAGATCACATGGAAAC
CTTGTGAGCATTTTGAGAAGTACAGTGTCAAATCTTTGCTTGCTTCAAAA
GGTTGAGAAGACAGCAATCGTCTGTGGATGTAGCTACATTCAGACACGTA
AATTTAGACCTTATTCTGTCATACCAAAGAAGTATTTGAAGCGAAAAAAT
AGAGACAAAAAAGATAGAGATGATGTTTATTTTTTGACTGACCAGGTTGA
CCCAACATACTCCGTGGATGATGCTGTCAATATGATAAAAGCTTATGACT
TGTTTGGTAATGAAAAACTTGATCTATTGCTGAATATGAATCTTGGAGAA
GGGAAGAAAAATTTTACAAACATGTCAGCTTAGCGTTGCCCGCTGGCCCC
AAAATCGATTTGAAAATTTCTGAAGTCACTCCAGTGTAATCCAATTTTTC
GAAAGAAGAGATCGAAGGAAATTTGAAAGAAATCATGAAAGCTGTCGATT
CTCACAAAAAAGCTGCTTCTTTAACCACAGGTACTGCAACAAATGATATC
GAAGAAGCCTTGAAAATCTTCAGTCACGGAGAAACGTATATGGCGGATAA
CACTGGGAAAATGAGACAAACTATCGCTCTTGTTGAAGAAGGAGAACTGG
AATTCGACCATTGCATTTCCACTCTTGATTTTCTTCCCAACATTAAACAT
CTCCCAAAAATACTCCGCAACAAAATGCCTAACACAAGGCGAGGGTGAAG
ATGCAGTGAAAGCAAAGCGAGCCGGTGCTACGTTCGTCGGTGGAAAAGAA
CTTATATCCAAGAATAAAGTTGCTGTCTTAAAAGGTCTTGTTCATCTCCC
AACACCTGTCACTGAAAGTCAAAAAGTTCTTGTATTCGCTGAGATGGCGT
TCTCTGCAGCAAGATCACATGGAAACCTTGTGAGCATTTTGAGAAGTACA
GTGTCAAATCTTTGCTTGCTTCAAAAGGTTGAGAAGACAGCAATCGTCTG
TGGATGTAGCTACATTCAGACACGTAAATTTAGACCTTATTCTGTCATAC
CAAAGAAGTATTTGAAGCGAAAAAATAGAGACAAAAAAGATAGAGATGAT
GTTTATTTTTTGACTGACCAGGTTGACCCAACATACTCCGTGGATGATGC
TGTCAATATGATAAAAGCTTATGACTTGTTTGGTAATGAAAAACTTGATC
TATTGCTGAATATGAATCTTGGAGAAGGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002790XLOC_002790Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004930-proteinTCONS_00004930-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004930-exon-sc0000049-1575043694:655072..655628TCONS_00004930-exon-sc0000049-1575043694:655072..655628Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:649256..649336TCONS_00004930-exon-sc0000049-1575043694:649256..649336Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:648925..648993TCONS_00004930-exon-sc0000049-1575043694:648925..648993Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:648322..648433TCONS_00004930-exon-sc0000049-1575043694:648322..648433Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:647695..647795TCONS_00004930-exon-sc0000049-1575043694:647695..647795Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:647418..647508TCONS_00004930-exon-sc0000049-1575043694:647418..647508Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:647075..647163TCONS_00004930-exon-sc0000049-1575043694:647075..647163Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1575043694:645162..645606TCONS_00004930-exon-sc0000049-1575043694:645162..645606Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:655072..655628TCONS_00004930-exon-sc0000049-1510915933:655072..655628Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:649256..649336TCONS_00004930-exon-sc0000049-1510915933:649256..649336Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:648925..648993TCONS_00004930-exon-sc0000049-1510915933:648925..648993Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:648322..648433TCONS_00004930-exon-sc0000049-1510915933:648322..648433Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:647695..647795TCONS_00004930-exon-sc0000049-1510915933:647695..647795Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:647418..647508TCONS_00004930-exon-sc0000049-1510915933:647418..647508Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:647075..647163TCONS_00004930-exon-sc0000049-1510915933:647075..647163Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1510915933:645162..645606TCONS_00004930-exon-sc0000049-1510915933:645162..645606Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:655072..655628TCONS_00004930-exon-sc0000049-1491911889:655072..655628Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:649256..649336TCONS_00004930-exon-sc0000049-1491911889:649256..649336Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:648925..648993TCONS_00004930-exon-sc0000049-1491911889:648925..648993Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:648322..648433TCONS_00004930-exon-sc0000049-1491911889:648322..648433Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:647695..647795TCONS_00004930-exon-sc0000049-1491911889:647695..647795Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:647418..647508TCONS_00004930-exon-sc0000049-1491911889:647418..647508Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:647075..647163TCONS_00004930-exon-sc0000049-1491911889:647075..647163Clytia hemisphaericaexon
TCONS_00004930-exon-sc0000049-1491911889:645162..645606TCONS_00004930-exon-sc0000049-1491911889:645162..645606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:645162..655628 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.0506	87.4468	50.8796	47.0386	19.8015	15.103	20.4464	23.4418	23.8404	19.6125	22.514	25.605	26.7651	31.8672	28.5182	27.0095	36.2989	40.5428	18.1863	13.7489	30.3438	29.0717	52.0769	44.1044	29.8471	34.3505	10.0424	11.1677	25.2471	28.0812
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028364Ribosomal_L1/biogenesis
IPR002143Ribosomal_L1
IPR016095Ribosomal_L1_3-a/b-sand
IPR023674Ribosomal_L1-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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