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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050291 ID=TCONS_00050291|Name=TCONS_00050291|organism=Clytia hemisphaerica|type=transcript|length=1052bp
GATAAATCCGATTACAGATCGCCGTGAATAAAATTCAAGAAGCTATTgta
ttgtaaataaatagagaGAGTCAGCTAATGAAGAAATAGTAAGAAGAACT
TTTTTCCGTGTAAATTTTTGCTAACAATTTTTCTAATGATAAGTTACTGT
TTACATTTAAATTTTTAGTGATCGTTAGATTTAATAAATTACTTTATGCT
GCCCCACCCTCCATCGGGTTCAAAGAAACCAAAACCATTGGCTCATGAGT
CAAAGATCAAATTCCCTGGCACAGGTAAAGCATTAAAAGATCCTCAAAAA
TCTGATTCAAGGTCCTTTAATTCGTGGAGAGAACCTTCAAACGAGATGAA
GAAACGTGCAACCTCAAAGAAAAAGGCTGAGCCTCCACATAGAGAAGGTT
CTTTCTCACATTATGCGCCTTTACCAGCCATTGGTGCTGCCCATGAAGAA
AAACAACATCTAAATGGAAAGCGTAGTTTACCTAAGAGTGCAGAGAAACA
ATATCCACCGAATGGTGATGATAACCTactgaaaacaatcaaaaggaTGA
AGCTTGGTATGGACGATATAATGCCTGAAGCACCCGGCACATCTTCAATT
CAGCGTGCTGCTTCTCATCAAGCACAGTATTACATTAGCAAACACCAATG
TTATAATATCGAATTAATGATCAGATTGCCAAAAGGCTCCAAAATACAAT
ATACATTTAAATCAACCGACACATTAGAGACTGTTTTAAAATACCTTTCA
AAGGAAATGAAGGTAGCATTACCGTTGTCAAAATTTGTCCTATATTTGAA
TCAAGTAccgaaaattgaattgaatgaacttaaaaaaactctttttgagT
TAGGAATATTTGATAGATCTGTTTTAACACTTGATACAAGGGATTGATAT
CGAATACATTTATGTGTCATAGAGGTTGGAATTTTTAACTGTGAGTTTGG
TCATAATCAGTTCAAAGGAATTATTCTTATTACTTTAAAATTCCAAATTT
CGTTGcgaatttcaaaaactttcaagaacttcaaattatttttattgttg
GC Run BLAST on NCBI protein sequence of TCONS_00050291-protein >TCONS_00050291-protein ID=TCONS_00050291-protein|Name=TCONS_00050291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MLPHPPSGSKKPKPLAHESKIKFPGTGKALKDPQKSDSRSFNSWREPSNE
MKKRATSKKKAEPPHREGSFSHYAPLPAIGAAHEEKQHLNGKRSLPKSAE
KQYPPNGDDNLLKTIKRMKLGMDDIMPEAPGTSSIQRAASHQAQYYISKH
QCYNIELMIRLPKGSKIQYTFKSTDTLETVLKYLSKEMKVALPLSKFVLY
LNQVPKIELNELKKTLFELGIFDRSVLTLDTRD Run BLAST on NCBI transcript from alignment at scaffold_168:284679..285730 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050291 ID=TCONS_00050291|Name=TCONS_00050291|organism=Clytia hemisphaerica|type=transcript|length=1052bp|location=Sequence derived from alignment at scaffold_168:284679..285730 (Clytia hemisphaerica)
GCcaacaataaaaataatttgaagttcttgaaagtttttgaaattcgCAA
CGAAATTTGGAATTTTAAAGTAATAAGAATAATTCCTTTGAACTGATTAT
GACCAAACTCACAGTTAAAAATTCCAACCTCTATGACACATAAATGTATT
CGATATCAATCCCTTGTATCAAGTGTTAAAACAGATCTATCAAATATTCC
TAActcaaaaagagtttttttaagttcattcaattcaattttcggTACTT
GATTCAAATATAGGACAAATTTTGACAACGGTAATGCTACCTTCATTTCC
TTTGAAAGGTATTTTAAAACAGTCTCTAATGTGTCGGTTGATTTAAATGT
ATATTGTATTTTGGAGCCTTTTGGCAATCTGATCATTAATTCGATATTAT
AACATTGGTGTTTGCTAATGTAATACTGTGCTTGATGAGAAGCAGCACGC
TGAATTGAAGATGTGCCGGGTGCTTCAGGCATTATATCGTCCATACCAAG
CTTCAtccttttgattgttttcagtAGGTTATCATCACCATTCGGTGGAT
ATTGTTTCTCTGCACTCTTAGGTAAACTACGCTTTCCATTTAGATGTTGT
TTTTCTTCATGGGCAGCACCAATGGCTGGTAAAGGCGCATAATGTGAGAA
AGAACCTTCTCTATGTGGAGGCTCAGCCTTTTTCTTTGAGGTTGCACGTT
TCTTCATCTCGTTTGAAGGTTCTCTCCACGAATTAAAGGACCTTGAATCA
GATTTTTGAGGATCTTTTAATGCTTTACCTGTGCCAGGGAATTTGATCTT
TGACTCATGAGCCAATGGTTTTGGTTTCTTTGAACCCGATGGAGGGTGGG
GCAGCATAAAGTAATTTATTAAATCTAACGATCACTAAAAATTTAAATGT
AAACAGTAACTTATCATTAGAAAAATTGTTAGCAAAAATTTACACGGAAA
AAAGTTCTTCTTACTATTTCTTCATTAGCTGACTCtctctatttatttac
aatacAATAGCTTCTTGAATTTTATTCACGGCGATCTGTAATCGGATTTA
TC Coding sequence (CDS) from alignment at scaffold_168:284679..285730 >TCONS_00050291 ID=TCONS_00050291|Name=TCONS_00050291|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_168:284679..285730 (Clytia hemisphaerica)
TCAATCCCTTGTATCAAGTGTTAAAACAGATCTATCAAATATTCCTAAct
caaaaagagtttttttaagttcattcaattcaattttcggTACTTGATTC
AAATATAGGACAAATTTTGACAACGGTAATGCTACCTTCATTTCCTTTGA
AAGGTATTTTAAAACAGTCTCTAATGTGTCGGTTGATTTAAATGTATATT
GTATTTTGGAGCCTTTTGGCAATCTGATCATTAATTCGATATTATAACAT
TGGTGTTTGCTAATGTAATACTGTGCTTGATGAGAAGCAGCACGCTGAAT
TGAAGATGTGCCGGGTGCTTCAGGCATTATATCGTCCATACCAAGCTTCA
tccttttgattgttttcagtAGGTTATCATCACCATTCGGTGGATATTGT
TTCTCTGCACTCTTAGGTAAACTACGCTTTCCATTTAGATGTTGTTTTTC
TTCATGGGCAGCACCAATGGCTGGTAAAGGCGCATAATGTGAGAAAGAAC
CTTCTCTATGTGGAGGCTCAGCCTTTTTCTTTGAGGTTGCACGTTTCTTC
ATCTCGTTTGAAGGTTCTCTCCACGAATTAAAGGACCTTGAATCAGATTT
TTGAGGATCTTTTAATGCTTTACCTGTGCCAGGGAATTTGATCTTTGACT
CATGAGCCAATGGTTTTGGTTTCTTTGAACCCGATGGAGGGTGGGGCAGC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050291-exon-scaffold_168-1491911889:284679..285730 | TCONS_00050291-exon-scaffold_168-1491911889:284679..285730 | Clytia hemisphaerica | exon |
| TCONS_00050291-exon-scaffold_168-1510915933:284679..285730 | TCONS_00050291-exon-scaffold_168-1510915933:284679..285730 | Clytia hemisphaerica | exon |
| TCONS_00050291-exon-scaffold_168-1575043694:284679..285730 | TCONS_00050291-exon-scaffold_168-1575043694:284679..285730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:284679..285730 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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