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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050354 ID=TCONS_00050354|Name=TCONS_00050354|organism=Clytia hemisphaerica|type=transcript|length=2388bp
AACTTTTGATGCTACTAAATGATGctgttttttagatttttattatTACA
TTTTACAGAAAACCTAGTAGAAATATCAAATGGATGGCTCTACTTCCTAT
TTGCTGATTTGCACTGTTATTCATTTATTTGGATGTTTCTGTTTTTTCAA
TGGCTTTTTACCAAATACAAACATTAtttcaacaaaagatttttcGCAAA
ATACAAATCTTTCCAAAAGATCATTCAGGAAGATTGATAAACtggtattt
gttttgattgatgcTTTGAGATCAGACTTCATTTTGGATGGGAATCACAA
TATGCCTTTTCTACAATCACTTATTAAAGAAAATCAAACGTTCAGCTATG
TATCGATAGCAAGTTCACCTACAGTTACAATGCCTCGAATAAAGGCCATA
ACATCTGGCACAATCCCcagcttttttgagtttttcaaaaactcTGCTTC
AAAGGAATACACACAAGATAACTTTGTCCAACAGTTTCATAACAATAACA
TTTCAATGGTTTTCTATGGTGATAATACATGGACTAAACTTTTCCCTGAG
AAGTTTTTAAGAAGCGATGGAACCAATTCATTTTAtgttaatgattttta
tgaagtCGACAACAATGTAACACGCCATCTTAATCCTGAATTAACAACCC
TGGACTGGGACTCTATGATCTTGCATTACCTTGGATTAGACCATATAGGT
CATACACACGGTCCATTTAGTCCACTTATTCAGCAAAAACTTCAAGAAAT
GGATTCTATTATTCAGAGAATTTGGCTATCAGTTaagaaatcaaatgaaa
atacaatgatagTCATTACAGGAGATCATGGAATGAGCAACGCTGGGAGT
CATGGAGGTtcatcaaaagaagaaattaataCTCCCCTCATATTTCTTCC
AACACATCTGCATGGGAAACCACTTTATAAGGAGAATATTCGCCAAATCG
ATATTGCTGTTACTTTTTCAGTTCTTTTTGGGACCGAGATCCCAAAACAA
AGCATTGGTGTTCCAGCCCCTTTTATAAGTAGTATCTATGATTTTGAAGA
AATGGCAAGAGTCAAAAGAAAGTTAGCATGTCACTTTCACACACTAAGCA
TCCCTGAAAAAGATTTGAATGAGTTGCTCCTAGATTATTGTAATGGAATT
CATACAGATGATCAGGTCATCAAAAAAGCATCAGATTACTTAGTGATGAA
TTCATCAAGCTACAATGACTTACTGATGGCTTTAGGAATCATAGTCATTT
TTCTATCTTGTGTTTTATCTCTAATTTACTGTCAAAGAAACCTTGGTGTT
GGGGATCAAAATATTGATGAGCAGATTAAAAGAGAAGATAAAAATTATAC
TAACGGTTTTATCTACTTTTGGTTGTTCATTTTCCAAGTGTCACAAACAT
CAAGTAGTTTCATTGAAGAGGAGCATTACTTATACTACTATGCATTACCA
TCGTTCATTATGCTTTTGATAGTATGCCAATCAAATATCCTCTCAACacc
aatttttattttgatgttattgTTAAGACTTGTAAAATCATGGAATCAAA
CTGGTGTTAACTGGATTGCACTGGAGGATATTGAGAATTATCTAAATGCA
AATAATGGGAGCTTAGCTGCTACAATTTTGCTTGGTTTTGTctttttgct
tttattgaaaaagaaaatgatgaagGAATATTTAAATATTGTTATCTTAG
TATTGATTACATCATACAAACTATGCCACTGCAAGAATTATCTGGATCAA
TTATGTAATCAGCAATCACAAGTTTCCATTGTAAAAgtcatttattttgt
tattctCCTACAGACCATCAAGACGAAATTTCAAATGCAatccatgaaaa
catgctttaTGTTTTTAGCATTGTTATTTTTACGTCCGTCGAATTTTCCC
TGGTTTACTTTAGTTGTTGGTGTTGAATGCATTTTGGTGGAGAAAATTAT
ACCAGTAATGGGAAAACGACCAAGTTATAAACAAATATCTTTCTTACTAT
TAACTTTGACACGATTCTGTCATTTTGCACAGGGGAACTCAAATAGTTTT
GCCACAGTGGACATTTCAGCTGGTATGATTGGATTGAGTGAATATCATGA
AATCATATCAATTATTATCACATTGATAGCCACATATTCAAGCTTCCTAT
ACATTTTCTTCAGTATGTACATTTGCTTATCAAACCACGCACCGACATTG
ATGAAATCTGTTGGATTTACTATATGGATTTACCAAATGATTGAAATCCT
ATTATACAGTATTGTTGTGTTTTTGATGAGGTATCATCTGTTCATATGGA
GTGTTTTTgctccaaaatatttttatttgatggtACAAGCtttgatcaat
tttttatttattattccTTGTTTTGTTTACAGAAAATG Run BLAST on NCBI protein sequence of TCONS_00050354-protein >TCONS_00050354-protein ID=TCONS_00050354-protein|Name=TCONS_00050354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=769bp
MDGSTSYLLICTVIHLFGCFCFFNGFLPNTNIISTKDFSQNTNLSKRSFR
KIDKLVFVLIDALRSDFILDGNHNMPFLQSLIKENQTFSYVSIASSPTVT
MPRIKAITSGTIPSFFEFFKNSASKEYTQDNFVQQFHNNNISMVFYGDNT
WTKLFPEKFLRSDGTNSFYVNDFYEVDNNVTRHLNPELTTLDWDSMILHY
LGLDHIGHTHGPFSPLIQQKLQEMDSIIQRIWLSVKKSNENTMIVITGDH
GMSNAGSHGGSSKEEINTPLIFLPTHLHGKPLYKENIRQIDIAVTFSVLF
GTEIPKQSIGVPAPFISSIYDFEEMARVKRKLACHFHTLSIPEKDLNELL
LDYCNGIHTDDQVIKKASDYLVMNSSSYNDLLMALGIIVIFLSCVLSLIY
CQRNLGVGDQNIDEQIKREDKNYTNGFIYFWLFIFQVSQTSSSFIEEEHY
LYYYALPSFIMLLIVCQSNILSTPIFILMLLLRLVKSWNQTGVNWIALED
IENYLNANNGSLAATILLGFVFLLLLKKKMMKEYLNIVILVLITSYKLCH
CKNYLDQLCNQQSQVSIVKVIYFVILLQTIKTKFQMQSMKTCFMFLALLF
LRPSNFPWFTLVVGVECILVEKIIPVMGKRPSYKQISFLLLTLTRFCHFA
QGNSNSFATVDISAGMIGLSEYHEIISIIITLIATYSSFLYIFFSMYICL
SNHAPTLMKSVGFTIWIYQMIEILLYSIVVFLMRYHLFIWSVFAPKYFYL
MVQALINFLFIIPCFVYRK Run BLAST on NCBI transcript from alignment at scaffold_169:23865..26252 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050354 ID=TCONS_00050354|Name=TCONS_00050354|organism=Clytia hemisphaerica|type=transcript|length=2388bp|location=Sequence derived from alignment at scaffold_169:23865..26252 (Clytia hemisphaerica)
CATTTTCTGTAAACAAAACAAggaataataaataaaaaattgatcaaaGC
TTGTaccatcaaataaaaatattttggagcAAAAACACTCCATATGAACA
GATGATACCTCATCAAAAACACAACAATACTGTATAATAGGATTTCAATC
ATTTGGTAAATCCATATAGTAAATCCAACAGATTTCATCAATGTCGGTGC
GTGGTTTGATAAGCAAATGTACATACTGAAGAAAATGTATAGGAAGCTTG
AATATGTGGCTATCAATGTGATAATAATTGATATGATTTCATGATATTCA
CTCAATCCAATCATACCAGCTGAAATGTCCACTGTGGCAAAACTATTTGA
GTTCCCCTGTGCAAAATGACAGAATCGTGTCAAAGTTAATAGTAAGAAAG
ATATTTGTTTATAACTTGGTCGTTTTCCCATTACTGGTATAATTTTCTCC
ACCAAAATGCATTCAACACCAACAACTAAAGTAAACCAGGGAAAATTCGA
CGGACGTAAAAATAACAATGCTAAAAACAtaaagcatgttttcatggatT
GCATTTGAAATTTCGTCTTGATGGTCTGTAGGagaataacaaaataaatg
acTTTTACAATGGAAACTTGTGATTGCTGATTACATAATTGATCCAGATA
ATTCTTGCAGTGGCATAGTTTGTATGATGTAATCAATACTAAGATAACAA
TATTTAAATATTCcttcatcattttctttttcaataaaagcaaaaagACA
AAACCAAGCAAAATTGTAGCAGCTAAGCTCCCATTATTTGCATTTAGATA
ATTCTCAATATCCTCCAGTGCAATCCAGTTAACACCAGTTTGATTCCATG
ATTTTACAAGTCTTAAcaataacatcaaaataaaaattggtGTTGAGAGG
ATATTTGATTGGCATACTATCAAAAGCATAATGAACGATGGTAATGCATA
GTAGTATAAGTAATGCTCCTCTTCAATGAAACTACTTGATGTTTGTGACA
CTTGGAAAATGAACAACCAAAAGTAGATAAAACCGTTAGTATAATTTTTA
TCTTCTCTTTTAATCTGCTCATCAATATTTTGATCCCCAACACCAAGGTT
TCTTTGACAGTAAATTAGAGATAAAACACAAGATAGAAAAATGACTATGA
TTCCTAAAGCCATCAGTAAGTCATTGTAGCTTGATGAATTCATCACTAAG
TAATCTGATGCTTTTTTGATGACCTGATCATCTGTATGAATTCCATTACA
ATAATCTAGGAGCAACTCATTCAAATCTTTTTCAGGGATGCTTAGTGTGT
GAAAGTGACATGCTAACTTTCTTTTGACTCTTGCCATTTCTTCAAAATCA
TAGATACTACTTATAAAAGGGGCTGGAACACCAATGCTTTGTTTTGGGAT
CTCGGTCCCAAAAAGAACTGAAAAAGTAACAGCAATATCGATTTGGCGAA
TATTCTCCTTATAAAGTGGTTTCCCATGCAGATGTGTTGGAAGAAATATG
AGGGGAGtattaatttcttcttttgatgaACCTCCATGACTCCCAGCGTT
GCTCATTCCATGATCTCCTGTAATGActatcattgtattttcatttgatt
tcttAACTGATAGCCAAATTCTCTGAATAATAGAATCCATTTCTTGAAGT
TTTTGCTGAATAAGTGGACTAAATGGACCGTGTGTATGACCTATATGGTC
TAATCCAAGGTAATGCAAGATCATAGAGTCCCAGTCCAGGGTTGTTAATT
CAGGATTAAGATGGCGTGTTACATTGTTGTCGacttcataaaaatcatta
acaTAAAATGAATTGGTTCCATCGCTTCTTAAAAACTTCTCAGGGAAAAG
TTTAGTCCATGTATTATCACCATAGAAAACCATTGAAATGTTATTGTTAT
GAAACTGTTGGACAAAGTTATCTTGTGTGTATTCCTTTGAAGCAgagttt
ttgaaaaactcaaaaaagctgGGGATTGTGCCAGATGTTATGGCCTTTAT
TCGAGGCATTGTAACTGTAGGTGAACTTGCTATCGATACATAGCTGAACG
TTTGATTTTCTTTAATAAGTGATTGTAGAAAAGGCATATTGTGATTCCCA
TCCAAAATGAAGTCTGATCTCAAAgcatcaatcaaaacaaataccaGTTT
ATCAATCTTCCTGAATGATCTTTTGGAAAGATTTGTATTTTGCgaaaaat
cttttgttgaaaTAATGTTTGTATTTGGTAAAAAGCCATTGAAAAAACAG
AAACATCCAAATAAATGAATAACAGTGCAAATCAGCAAATAGGAAGTAGA
GCCATCCATTTGATATTTCTACTAGGTTTTCTGTAAAATGTAataataaa
aatctaaaaaacagCATCATTTAGTAGCATCAAAAGTT Coding sequence (CDS) from alignment at scaffold_169:23865..26252 >TCONS_00050354 ID=TCONS_00050354|Name=TCONS_00050354|organism=Clytia hemisphaerica|type=CDS|length=2307bp|location=Sequence derived from alignment at scaffold_169:23865..26252 (Clytia hemisphaerica)
TTTTCTGTAAACAAAACAAggaataataaataaaaaattgatcaaaGCTT
GTaccatcaaataaaaatattttggagcAAAAACACTCCATATGAACAGA
TGATACCTCATCAAAAACACAACAATACTGTATAATAGGATTTCAATCAT
TTGGTAAATCCATATAGTAAATCCAACAGATTTCATCAATGTCGGTGCGT
GGTTTGATAAGCAAATGTACATACTGAAGAAAATGTATAGGAAGCTTGAA
TATGTGGCTATCAATGTGATAATAATTGATATGATTTCATGATATTCACT
CAATCCAATCATACCAGCTGAAATGTCCACTGTGGCAAAACTATTTGAGT
TCCCCTGTGCAAAATGACAGAATCGTGTCAAAGTTAATAGTAAGAAAGAT
ATTTGTTTATAACTTGGTCGTTTTCCCATTACTGGTATAATTTTCTCCAC
CAAAATGCATTCAACACCAACAACTAAAGTAAACCAGGGAAAATTCGACG
GACGTAAAAATAACAATGCTAAAAACAtaaagcatgttttcatggatTGC
ATTTGAAATTTCGTCTTGATGGTCTGTAGGagaataacaaaataaatgac
TTTTACAATGGAAACTTGTGATTGCTGATTACATAATTGATCCAGATAAT
TCTTGCAGTGGCATAGTTTGTATGATGTAATCAATACTAAGATAACAATA
TTTAAATATTCcttcatcattttctttttcaataaaagcaaaaagACAAA
ACCAAGCAAAATTGTAGCAGCTAAGCTCCCATTATTTGCATTTAGATAAT
TCTCAATATCCTCCAGTGCAATCCAGTTAACACCAGTTTGATTCCATGAT
TTTACAAGTCTTAAcaataacatcaaaataaaaattggtGTTGAGAGGAT
ATTTGATTGGCATACTATCAAAAGCATAATGAACGATGGTAATGCATAGT
AGTATAAGTAATGCTCCTCTTCAATGAAACTACTTGATGTTTGTGACACT
TGGAAAATGAACAACCAAAAGTAGATAAAACCGTTAGTATAATTTTTATC
TTCTCTTTTAATCTGCTCATCAATATTTTGATCCCCAACACCAAGGTTTC
TTTGACAGTAAATTAGAGATAAAACACAAGATAGAAAAATGACTATGATT
CCTAAAGCCATCAGTAAGTCATTGTAGCTTGATGAATTCATCACTAAGTA
ATCTGATGCTTTTTTGATGACCTGATCATCTGTATGAATTCCATTACAAT
AATCTAGGAGCAACTCATTCAAATCTTTTTCAGGGATGCTTAGTGTGTGA
AAGTGACATGCTAACTTTCTTTTGACTCTTGCCATTTCTTCAAAATCATA
GATACTACTTATAAAAGGGGCTGGAACACCAATGCTTTGTTTTGGGATCT
CGGTCCCAAAAAGAACTGAAAAAGTAACAGCAATATCGATTTGGCGAATA
TTCTCCTTATAAAGTGGTTTCCCATGCAGATGTGTTGGAAGAAATATGAG
GGGAGtattaatttcttcttttgatgaACCTCCATGACTCCCAGCGTTGC
TCATTCCATGATCTCCTGTAATGActatcattgtattttcatttgatttc
ttAACTGATAGCCAAATTCTCTGAATAATAGAATCCATTTCTTGAAGTTT
TTGCTGAATAAGTGGACTAAATGGACCGTGTGTATGACCTATATGGTCTA
ATCCAAGGTAATGCAAGATCATAGAGTCCCAGTCCAGGGTTGTTAATTCA
GGATTAAGATGGCGTGTTACATTGTTGTCGacttcataaaaatcattaac
aTAAAATGAATTGGTTCCATCGCTTCTTAAAAACTTCTCAGGGAAAAGTT
TAGTCCATGTATTATCACCATAGAAAACCATTGAAATGTTATTGTTATGA
AACTGTTGGACAAAGTTATCTTGTGTGTATTCCTTTGAAGCAgagttttt
gaaaaactcaaaaaagctgGGGATTGTGCCAGATGTTATGGCCTTTATTC
GAGGCATTGTAACTGTAGGTGAACTTGCTATCGATACATAGCTGAACGTT
TGATTTTCTTTAATAAGTGATTGTAGAAAAGGCATATTGTGATTCCCATC
CAAAATGAAGTCTGATCTCAAAgcatcaatcaaaacaaataccaGTTTAT
CAATCTTCCTGAATGATCTTTTGGAAAGATTTGTATTTTGCgaaaaatct
tttgttgaaaTAATGTTTGTATTTGGTAAAAAGCCATTGAAAAAACAGAA
ACATCCAAATAAATGAATAACAGTGCAAATCAGCAAATAGGAAGTAGAGC
CATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050354-exon-scaffold_169-1491911889:23865..26252 | TCONS_00050354-exon-scaffold_169-1491911889:23865..26252 | Clytia hemisphaerica | exon |
| TCONS_00050354-exon-scaffold_169-1510915933:23865..26252 | TCONS_00050354-exon-scaffold_169-1510915933:23865..26252 | Clytia hemisphaerica | exon |
| TCONS_00050354-exon-scaffold_169-1575043694:23865..26252 | TCONS_00050354-exon-scaffold_169-1575043694:23865..26252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:23865..26252 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002591 | Phosphodiest/P_Trfase |
| IPR017849 | Alkaline_Pase-like_a/b/a |
| IPR017850 | Alkaline_phosphatase_core |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00050354 vs. Swiss-Prot (Human)
Match: PIGG (GPI ethanolamine phosphate transferase 2 OS=Homo sapiens GN=PIGG PE=1 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 5.439e-75 Identity = 128/267 (47.94%), Postives = 175/267 (65.54%), Query Frame = 2
Query: 236 DKLVFVLIDALRSDFILD--GNHNMPFLQSLIKENQTFSYVSIASSPTVTMPRIKAITSGTIPSFFEFFKNSASKEYTQDNFVQQFHNNNISMVFYGDNTWTKLFPEKFLRSDGTNSFYVNDFYEVDNNVTRHLNPELTTLDWDSMILHYLGLDHIGHTHGPFSPLIQQKLQEMDSIIQRIWLSVKKSNENT----MIVITGDHGMSNAGSHGGSSKEEINTPLIFLPTHLHGKP---LYKENIRQIDIAVTFSVLFGTEIPKQSIG 1009
K+V VLIDALR DF+ G MP+ L+++ + S+V+ A PTVTMPRIKA+ +G++P F + +N S +D+ ++Q +VFYGD TW KLFP+ F+ DGT SF+V+D+ EVDNNVTRHL+ L DWD +ILHYLGLDHIGH GP SPLI QKL EMDS++ +I S++ T ++V+ GDHGMS GSHG SS EE+NTPLI + + KP + ++++Q D+A T ++ G IPK S+G
Sbjct: 66 SKVVIVLIDALRDDFVFGSKGVKFMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKALMTGSLPGFVDVIRNLNSPALLEDSVIRQAKAAGKRIVFYGDETWVKLFPKHFVEYDGTTSFFVSDYTEVDNNVTRHLDKVLKRGDWDILILHYLGLDHIGHISGPNSPLIGQKLSEMDSVLMKIHTSLQSKERETPLPNLLVLCGDHGMSETGSHGASSTEEVNTPLILISSAFERKPGDIRHPKHVQQTDVAATLAIALGLPIPKDSVG 332
The following BLAST results are available for this feature:
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