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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050342 ID=TCONS_00050342|Name=TCONS_00050342|organism=Clytia hemisphaerica|type=transcript|length=2027bp
CTGATATTATAAATCTTCCAAAAACTGTTTTATCCTTCCTACCCTAAATT
TCCCAAAAGCACAATATCATGTTAGAGGCTACTGGCTCTTCATTGACAAG
AATGCTTTGACAGTAAGATTTCATACAGTTTCTAAGGATTGacataaaaa
aagatttaatgaAAGTTTGGATAatattttgtttgttgtttCATTATGAT
CGCATTGTGATTTCATAATTcagtaaataaatttttattagaAATAAACT
TTGTAAGAATAACAACAAGTCGGATCATTCCTAATTTTCTGGCATGAAAT
TCTCACCTTTCCCTGACTAAATtgattcaaaatattgaaacgCTGTAAAA
TTCAATAGCCAAACTAAAAAGGAAGGAGGAAAACTTGGCAATTTGGACAA
ACCCTAAACCTGAATAGAGAGCGATTACTTCCTAAGTTCGTAACAGACTA
CAGTAATACACGAAAAAATATCATTTCCTAACGAAAAAATCCAGCGATTG
ACACTATTTGCGTTAGCATGAATGTATGCTTTACAAAATCCGGTGTTTTA
GTATAACATTTGAAAGCGTATTGGTTAAAAAGTTGAAGGCGTGTAATTGA
GGTATCACATTTCATCATAAGAGGGATTGGCTCGTGACATTTTTCTCGAC
TGAcagaaaaatcataattttttgaAGTAGTTGAGCGTAAGAGGTACTTG
AGAACCGAAGTAAGGAAACAAACGTGAAATTTATTCAAGTTCACTTGGAG
TCAGAAAATTTTTAGGAACTCTGTGTTACGTCCGGGGAAGTAAAAGCGGC
GACGAACCTTGAATACTCATATCGATTCAAGATATATCTATTCAACGACA
AAAAATCTGGTACACTTTCGTCGGTGTTATAAATTTTGCCAACCAGAgcg
cttttgtagattttgaaCTATTTTTTGGACACAAAACGATATACCATCAC
CATGCCGAGTGATAAAATTGTTCGACCGCGCGGTTACGGTTTGACCGCAC
AACTAAAGAAAAAACAGGACgccaaatttgattttgatttagcAGAAGAT
TGTTTGACTTGGATGAAATTCGTACTCAATGATGGTGACTTTACAGCAGA
ATCAAGCTCACTACCCGATACCATCAGTGCTCAATCAGATCTAATGATGC
CATTGAAAGACGGTACCATACTCTGCAAAATCATGAACGTTGTCAAGCCT
GGAAGCGTTAAGAAAATCAATACAGGCAAAATGGCATTCAAACAAATGGA
AAACATCAACAATTTCTTGGAAGGTTGTGAGAGTATTGGATGCAAGAAAT
TAGATCTCTTCCAAACGGTCGATCTGTACGAAGGACAAAATCTGCCACag
GTAATTAATGGTATCTTGGCACTCGGACGTAAAGCACAAGCGATCGGCTA
CGATGGGCCAGAGCTCGGGCCTACTGAAGCGACCGAAAACAAACGAGAAT
TCTCTGAAGAGACTCTACGGGCTGGTCAAGGTATCATTGGATTACAGGCT
GGTTCAAACAAAGGAGCATCTCAGGCTGGTCAAAACTTTGGAAAGACCAG
GTCTATTATGGATTAAATTAGTTGGCAAGAAGTATTCACTTCTGTAATCT
AGGGATAAACTATTTTATTACGTAAACTATTCCCACTGCACTAATCCCAA
AAACATCACAACGTATTAAAAAAGTTAGGACAAATTTAACGGTTTGGTGT
GGTAATAGTGTCTTGGGTACTCCCCACTTGTAATtgtaaaatgttttgtt
tatatcatgCTATTATTacctttttgaatttgacattaTTTATAAAACTT
TATGTACTAGATTATATATTTAGGTATTAATGCTATGCACCAGCCAAAAT
TACCCCTAAATgcaaatttaagatttttgggATGCTGATCTTGACTATAA
TGAAATGCCTTTTAGATACTAGCTCTGTAAATAGTTTTAACATGGTTAGC
ATCCCAGAGATGGTTTACGACAttgtttcgacgttcatctaacgttgttT
GACCGTCATAAAGCGTTGATTGACGTT Run BLAST on NCBI protein sequence of Myophylin protein >TCONS_00050342-protein ID=TCONS_00050342-protein|Name=Myophylin protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MPSDKIVRPRGYGLTAQLKKKQDAKFDFDLAEDCLTWMKFVLNDGDFTAE
SSSLPDTISAQSDLMMPLKDGTILCKIMNVVKPGSVKKINTGKMAFKQME
NINNFLEGCESIGCKKLDLFQTVDLYEGQNLPQVINGILALGRKAQAIGY
DGPELGPTEATENKREFSEETLRAGQGIIGLQAGSNKGASQAGQNFGKTR
SIMD Run BLAST on NCBI transcript from alignment at scaffold_169:154638..159465- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050342 ID=TCONS_00050342|Name=TCONS_00050342|organism=Clytia hemisphaerica|type=transcript|length=4828bp|location=Sequence derived from alignment at scaffold_169:154638..159465- (Clytia hemisphaerica)
CTGATATTATAAATCTTCCAAAAACTGTTTTATCCTTCCTACCCTAAATT
TCCCAAAAGCACAATATCATGTTAGAGGCTACTGGCTCTTCATTGACAAG
AATGCTTTGACAGTAAGATTTCATACAGTTTCTAAGGATTGACATAAAAA
AAGATTTAATGAAAGTTTGGATAATATTTTGTTTGTTGTTTCATTATGAT
CGCATTGTGATTTCATAATTCAGTAAATAAATTTTTATTAGAAATAAACT
TTGTAAGAATAACAACAAGTCGGATCATTCCTAATTTTCTGGCATGAAAT
TCTCACCTTTCCCTGACTAAATTGATTCAAAATATTGAAACGCTGTAAAA
TTCAATAGCCAAACTAAAAAGGAAGGAGGAAAACTTGGCAATTTGGACAA
ACCCTAAACCTGAATAGAGAGCGATTACTTCCTAAGTTCGTAACAGACTA
CAGTAATACACGAAAAAATATCATTTCCTAACGAAAAAATCCAGCGATTG
ACACTATTTGCGTTAGCATGAATGTATGCTTTACAAAATCCGGTGTTTTA
GTATAACATTTGAAAGCGTATTGGTTAAAAAGTTGAAGGCGTGTAATTGA
GGTATCACATTTCATCATAAGAGGGATTGGCTCGTGACATTTTTCTCGAC
TGACAGAAAAATCATAATTTTTTGAAGTAGTTGAGCGTAAGAGGTACTTG
AGAACCGAAGTAAGGAAACAAACGTGAAATTTATTCAAGTTCACTTGGAG
TCAGAAAATTTTTAGGAACTCTGTGTTACGTCCGGGGAAGTAAAAGCGGC
GACGAACCTTGAATACTCATATCGATTCAAGATATATCTATTCAACGACA
AAAAATCTGGTACACTTTCGTCGGTGTTATAAATTTTGCCAACCAGAGCG
CTTTTGTAGATTTTGAACTATTTTTTGGACACAAAACGATATACCATCAC
CATGCCGAGTGATAAAATTGTTCGACCGCGCGGTTACGGTTTGACCGCAC
AACTAAAGAAAAAACAGGACGCCAAATTTGATTTTGATTTAGCAGAAGAT
TGTTTGACTTGGATGAAATTCGTACTCAATGATGGTGACTTTACAGCAGA
ATCAAGCTCACTACCCGATACCGTAAGTTGCTTACTATAAACTTCAAAGA
AACCTCGACAATTTTTTATCCCCTCTCCCCTGTTCTTATTTAAATCTCTG
TTCATTTCAAATCTGAACCAAGTTGAGAGAAAGCAAAACACCTATGAATC
CTTCTAAAATCAAGCCCAATCATCTTCGCGATGTAACTTCTCTATTATTC
ATCCCGGGGGGGGGGCAGCCAGGCAAATTGACCGACGGGTATGTGCAGCG
GCTAAGGGTCTATTTTTCAAGATAGCAGAAATGCACTGTAAGGGTAGACT
TTTTGTTAAATGCACTGTAAGGGTGGAAATTATAGTAAATCAAGGAAAAA
TTAAGATTTTTTGCCCAAAAAGTCTGATTTTTTTGCTCTAAAAGGGTTGA
AAATTTGAAGAAAATGCACTGTAAGGGTATGAATTTGACGGAATTTCGGC
GATTTTTTGCTGCACTATAAGGGTGCGATTTTAAAAGCCAATTTTTTCGC
CGCACATACCGTCAGTTGGCAAACCCAGTGCCCCCCAGGGTTATTTATCC
ATTCATTCGAGTTCATTAACATATAAGGATATGATCTAATCTAGCCTATC
TGGTAGTACCTTCATTACCTCCTAACTTTTGAAGATTTTGGAGTCCTTTT
CAGCTCAGCATTCGGGTCAGTGAGACAGGGTTGCTTATCATGGTTCTATC
TATTCCTATTGCTTTGATACGTACAACTCAAAATGAACCTCTTCCGCTCT
TTACATTCTAGATCAGTGCTCAATCAGATCTAATGATGCCATTGAAAGAC
GGTACCATACTCTGCAAAATCATGAACGTTGTCAAGCCTGGAAGCGTTAA
GAAAATCAATACAGGCAAAATGGCATTCAAACAAATGGAAAACATCAACA
ATTTCTTGGAAGGTTGTGAGAGTATTGGATGCAAGAAATTAGATCTCTTC
CAAACGGTCGATCTGTACGAAGGACAAAATCTGCCACAGGTAAAAATAAT
ATTTTTCTCCGCAATGTTCTACCCAAGCTACAATCATCTAAATAATATAT
TAGTACCATACTTAAAAAAGCTTGGAGGAGAACGAAGAATTTTTGGAAAA
GAGCTCTNACCATACTTAAAAAAGCTTGGAGGAGAACGAAGAATTTTCGG
AAAAGAGCTCCTATGCAGGGATTGTAGCATACAATGGTGTCTTTATGTTT
GACATGTTGGAAGCATGATTGATTAAATACAATACCAGTCAGAATGACCA
TTAAAAAGATATTGCAGTGCTAGGATGTATTAATAAAATGTTGGGCATAT
TTATCTCCTGATTTAATGGGTTTCAGGTTTCTTTATCATCAATATAGATA
TAACTGATCCATAGAACAATGCTACATAGGCATTACACAAGATTATTATG
AAGGACCTCTCTAAGTTGAATAACAAAATTCAAGTACTTTTGAGCTGAGT
TGGGGTGGGTGATAATGTACATGACAATAAAACAACATCCGACGCTTACA
TTGTCTTGTGGTTAAAAATGACGTAAGAATATCTTAAAAATGAGACAAAA
TATGTGTTGAGGAGGAAGTTTATTATTTTGTTGCTTCTAAATGACAAGTG
GAACAGCTGATTCGGAGGGAAGGTGACCTAGGGTAGGGTGGGTGCCCCCT
CCCCTCCCTCTAAGAAAGTAAAAAAGATTTCTAGTTTAAAAGGTACTGAA
TTTCGAATGTGCGACCATATCGGCTTTATCCGTCGTTTTATAATTCAGAA
AAAATAATGTTTTCAATGATTCTCTGGTAATTGTCTGTTATAATCATTTC
TTATCACTCTATCTCGACATGCAATACTTCATGAATTATGAATGTCTTAA
TTAATACTTCAATGTCTTAATTAAGCATACAGTTTTTCTACAAGCACCAA
GTTAGCCACAAATATCTCATAGTTTATAAAAGTCTTTCACCATGTTAGAT
TGACAAAGTAGAATTGCCTAAATGTACACTTTTTATAAGGACCAGTAAAT
TAGGGCCATACAACTGTTCTTATTTTTGACGATTTTCAGGTTAAAATAAA
CTTACTTGACGACTTTAATGAGCTTTAATTGACTTATAGTCAGCATTTTT
ATGAATTATGTCCAAAATCTAAGGCTTGTTCTTAATTTGTATTTGAATTT
TGAAAAAAAAGTTTCCATAGAATTATTCTAAGGATAAAAAGCGTTGTTGA
CTTTGTATGGTACAGACATCACATCACAATCGTTTAAAGCTTGTTAAAAA
TGCATAAAATAGAGAATGGAGAATCGACATATATACCATTTTGATTTTGA
TCTCAGACAAACAGGAGCGTCTGACAAGCTTATCGTGATAATGCTAAATC
TCAGCAGCATTTTGATTATCTAATCTACTTTATATAATCTGCCTGTGTAA
TAGTCTCCCATGGCTTCATTAGCCATTGCCTATTATTCTCGAGAACCCTA
TTAAAATTATGCAACCCAGTTGCTGATACGTAACATCCGAATAACGTCCA
TCTAACATCCAAATAACGTCCATTTGAATATCTAACATTTAGATAACGTC
CATCTAACATCCAAATGACGTCCATCTAACAACCAGAAAAAGTTCATCTG
ATAGCGTTAGACAATCGCTGGGTAACACCTGTGTATCCTATTACAAACAA
CGAAAAGCTATCAAAGAGTCCCAAACGAATAAGTTTACATAAGTCTACGT
CTCAGCCGGCAAAAAAGTTTTATCGTTTTATCGTTCACAAGGTCAAAACA
AAGTCATGTCAAATGAAACGTGAAGTTATTTTCCGCTGAAAAGGATGTAA
AAAATGATAGATTTCTGTTAACCTCCTCGTAAGAGATTCTAATACATTTT
GACCTTATTCATTAACAATTTTGTTAACAGCAGTTTTATAGAAGTTTGCC
GAAAAAGGCTATGGAATCCAAGTCCACCATTTCGGATGGTCAGAAAGCTC
TCAAAAATTAGTTAAAATTCAGTTAAAAGTTTTTTGTTTTGATTCTTGGT
CTGTTCTTTTCTGTATTTCTCACAAGTTTTAACTCTGCTTTTTTTATCCA
GGTAATTAATGGTATCTTGGCACTCGGACGTAAAGCACAAGCGATCGGCT
ACGATGGGCCAGAGCTCGGGCCTACTGAAGCGACCGAAAACAAACGAGAA
TTCTCTGAAGAGACTCTACGGGCTGGTCAAGGTATCATTGGATTACAGGC
TGGTTCAAACAAAGGAGCATCTCAGGCTGGTCAAAACTTTGGAAAGACCA
GGTCTATTATGGATTAAATTAGTTGGCAAGAAGTATTCACTTCTGTAATC
TAGGGATAAACTATTTTATTACGTAAACTATTCCCACTGCACTAATCCCA
AAAACATCACAACGTATTAAAAAAGTTAGGACAAATTTAACGGTTTGGTG
TGGTAATAGTGTCTTGGGTACTCCCCACTTGTAATTGTAAAATGTTTTGT
TTATATCATGCTATTATTACCTTTTTGAATTTGACATTATTTATAAAACT
TTATGTACTAGATTATATATTTAGGTATTAATGCTATGCACCAGCCAAAA
TTACCCCTAAATGCAAATTTAAGATTTTTGGGATGCTGATCTTGACTATA
ATGAAATGCCTTTTAGATACTAGCTCTGTAAATAGTTTTAACATGGTTAG
CATCCCAGAGATGGTTTACGACATTGTTTCGACGTTCATCTAACGTTGTT
TGACCGTCATAAAGCGTTGATTGACGTT Coding sequence (CDS) from alignment at scaffold_169:154638..159465- >TCONS_00050342 ID=TCONS_00050342|Name=TCONS_00050342|organism=Clytia hemisphaerica|type=CDS|length=1845bp|location=Sequence derived from alignment at scaffold_169:154638..159465- (Clytia hemisphaerica)
GTAATTAATGGTATCTTGGCACTCGGACGTAAAGCACAAGCGATCGGCTA
CGATGGGCCAGAGCTCGGGCCTACTGAAGCGACCGAAAACAAACGAGAAT
TCTCTGAAGAGACTCTACGGGCTGGTCAAGGTATCATTGGATTACAGGCT
GGTTCAAACAAAGGAGCATCTCAGGCTGGTCAAAACTTTGGAAAGACCAG
GTCTATTATGGATTAAATCAGTGCTCAATCAGATCTAATGATGCCATTGA
AAGACGGTACCATACTCTGCAAAATCATGAACGTTGTCAAGCCTGGAAGC
GTTAAGAAAATCAATACAGGCAAAATGGCATTCAAACAAATGGAAAACAT
CAACAATTTCTTGGAAGGTTGTGAGAGTATTGGATGCAAGAAATTAGATC
TCTTCCAAACGGTCGATCTGTACGAAGGACAAAATCTGCCACAGATGCCG
AGTGATAAAATTGTTCGACCGCGCGGTTACGGTTTGACCGCACAACTAAA
GAAAAAACAGGACGCCAAATTTGATTTTGATTTAGCAGAAGATTGTTTGA
CTTGGATGAAATTCGTACTCAATGATGGTGACTTTACAGCAGAATCAAGC
TCACTACCCGATACCGTAATTAATGGTATCTTGGCACTCGGACGTAAAGC
ACAAGCGATCGGCTACGATGGGCCAGAGCTCGGGCCTACTGAAGCGACCG
AAAACAAACGAGAATTCTCTGAAGAGACTCTACGGGCTGGTCAAGGTATC
ATTGGATTACAGGCTGGTTCAAACAAAGGAGCATCTCAGGCTGGTCAAAA
CTTTGGAAAGACCAGGTCTATTATGGATTAAATCAGTGCTCAATCAGATC
TAATGATGCCATTGAAAGACGGTACCATACTCTGCAAAATCATGAACGTT
GTCAAGCCTGGAAGCGTTAAGAAAATCAATACAGGCAAAATGGCATTCAA
ACAAATGGAAAACATCAACAATTTCTTGGAAGGTTGTGAGAGTATTGGAT
GCAAGAAATTAGATCTCTTCCAAACGGTCGATCTGTACGAAGGACAAAAT
CTGCCACAGATGCCGAGTGATAAAATTGTTCGACCGCGCGGTTACGGTTT
GACCGCACAACTAAAGAAAAAACAGGACGCCAAATTTGATTTTGATTTAG
CAGAAGATTGTTTGACTTGGATGAAATTCGTACTCAATGATGGTGACTTT
ACAGCAGAATCAAGCTCACTACCCGATACCGTAATTAATGGTATCTTGGC
ACTCGGACGTAAAGCACAAGCGATCGGCTACGATGGGCCAGAGCTCGGGC
CTACTGAAGCGACCGAAAACAAACGAGAATTCTCTGAAGAGACTCTACGG
GCTGGTCAAGGTATCATTGGATTACAGGCTGGTTCAAACAAAGGAGCATC
TCAGGCTGGTCAAAACTTTGGAAAGACCAGGTCTATTATGGATTAAATCA
GTGCTCAATCAGATCTAATGATGCCATTGAAAGACGGTACCATACTCTGC
AAAATCATGAACGTTGTCAAGCCTGGAAGCGTTAAGAAAATCAATACAGG
CAAAATGGCATTCAAACAAATGGAAAACATCAACAATTTCTTGGAAGGTT
GTGAGAGTATTGGATGCAAGAAATTAGATCTCTTCCAAACGGTCGATCTG
TACGAAGGACAAAATCTGCCACAGATGCCGAGTGATAAAATTGTTCGACC
GCGCGGTTACGGTTTGACCGCACAACTAAAGAAAAAACAGGACGCCAAAT
TTGATTTTGATTTAGCAGAAGATTGTTTGACTTGGATGAAATTCGTACTC
AATGATGGTGACTTTACAGCAGAATCAAGCTCACTACCCGATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050342-exon-scaffold_169-1575043694:158344..159465 | TCONS_00050342-exon-scaffold_169-1575043694:158344..159465 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1575043694:157377..157604 | TCONS_00050342-exon-scaffold_169-1575043694:157377..157604 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1575043694:154638..155314 | TCONS_00050342-exon-scaffold_169-1575043694:154638..155314 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1510915933:158344..159465 | TCONS_00050342-exon-scaffold_169-1510915933:158344..159465 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1510915933:157377..157604 | TCONS_00050342-exon-scaffold_169-1510915933:157377..157604 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1510915933:154638..155314 | TCONS_00050342-exon-scaffold_169-1510915933:154638..155314 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1491911889:158344..159465 | TCONS_00050342-exon-scaffold_169-1491911889:158344..159465 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1491911889:157377..157604 | TCONS_00050342-exon-scaffold_169-1491911889:157377..157604 | Clytia hemisphaerica | exon |
| TCONS_00050342-exon-scaffold_169-1491911889:154638..155314 | TCONS_00050342-exon-scaffold_169-1491911889:154638..155314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:154638..159465 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031032 | actomyosin structure organization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003779 | actin binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0031032 |
actomyosin structure organization |
| molecular_function |
GO:0003779 |
actin binding |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00050342 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 1.102e-35 Identity = 83/200 (41.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query: 985 YGLTAQLKKKQDAKFDFDLAEDCLTWMKFVLNDGDFTAESSSLPDTISAQSDLMMPLKDGTILCKIMNVVKPG---SVKKINTGKMAFKQMENINNFLEGCESIGCKKLDLFQTVDLYEGQNLPQVINGILALGRKAQAIG---YDG-PELGPTEATENKREFSEETLRAGQGIIGLQAGSNKGASQAGQN-FGKTRSIM 1560
YGL+ ++++K + K+D DL + W+ +L AE P ++ L DGT+LCK++N + P + KI+ KMAFKQME I+ FL+ E+ G + D+FQTVDL+EG+++ V ++ALG A Y G P +A +N+R FSEE LR GQ +IGLQ GSNKGASQAG +G R IM
Sbjct: 8 YGLSREVQEKIEQKYDADLENKLVDWI--ILQ----CAEDIEHPP--PGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
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