TCONS_00050365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050365
Unique NameTCONS_00050365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050365 ID=TCONS_00050365|Name=TCONS_00050365|organism=Clytia hemisphaerica|type=transcript|length=1712bp
GTTCTATTTTCGAATTTTAGCTTTCGAACTTTAGCTTGGCCACCTAGTAT
CCCCCGGGTTTTAACgacaatttatcaaaattttattactCGCAAAAATT
AGAGTAAGTAAAAAGACAACAACCGGAACAATTTCTAGAGCTTATATTAA
TCTAAATATACCATGCAATATGTACAAAAATTATTACTGAAGAATGTTTA
TACTTTGGTAATATCATTTTCATTCGGACCTTATGTACACAAATTCATCA
TAAGAAAAAGACATAGTCTTAACCTGCTTTTACCCGGTAAATTCAACGTT
GAGGAGCTATACCATGTGTAACCTTAAACAAACTTCAtccttttgaattt
taaagagCTTGAGAGCTTATCCGAATTTCAGCACAATCAATGAAGTTTGT
ACAGTACCCTACAAGTTCGGAAAGTTGCATAGTTTCTCAGCGCTGCAAAA
TATTCGCAACGTTGCACACCGCAGTGGGTGCGCTGTCATTCTACGCAACA
ACTTCAAATTGAAGCCATTGTCATTTGAAATTACAGTTgatactctctaa
ttcgattttcaaggggaatatAATTTtcgtcgaataagggagcgcaacga
atagtagaatgtcgtttaagagtttcttgttgacggtgaatTTTagtatt
atcgaataatagagcgtattaaatagtagaacgtcaacTGTATGACCAAC
GACCATAAACACAAGAGCAAAATCCCACTTTGTCTACCCAAGTATCCTTA
CTGTCAAGAATGATTGTAAAAAATCCCTAGGTAGGAAATTAAGATCATAG
GGTGAAAAGTCTACTTTAAAATTTTCTACCAATTGCACATGATTTTGAGA
CCTCGTTCGTCACCCTGTAACCCCGCTCTTCGTTCAAAGACGAGTGATGA
CAAATTCAGCAGAAAAAAACTGCGAAATTTGACAACAGACTTTCAGTGCG
ATTTTATGCAATTTCCCGAGCTGGCTACAGATGAAGTCAGCATAAATGAT
TTATTGTCAAATAGTTGGAAACTGTTTCCGCATTTTAAGTTCAGCCACGA
TCCTTTTGAAAACTAAATCAACACTTTCACCATTCTTCACTGACGTTTCC
ATTGGTATCATACCCTCAAAGTCTCCATAATTAACTGCATTTTTCGTTTT
CACTTCACGTGGCAAATCAAGTTTATTCCCAACAAGAACTTTGGTTAAAT
TCCTTTTTGTATTTGCACCATTTAGCAGATTGGTCCACATCGGTAAACAA
GCAAATGTTTCTTTCTTGCTAATATCATACATGAAAACAATCGCATCTAT
ACTTGACATATAGCTCTTTAAAATCCCTTTAAATTTGTAAGATCCAGCTG
CATCAAGAAGCTGTAACTGTACTGTCTCTTCTCCATCTCCTAGATTGAAT
CTAGTGATTTTTCGGTCAACTCCAACGGTCGTACTTGTGCAGGATGAGAA
ACTACCAAGTAACAGCCTACGAATTAATGAACTTTTTCCGACACCAGACT
CACCAATGACCATAATCTTGTAACAGTTTTGTATATCTCcgaaatcttga
aaatcattcatcttcttttgtattttttcatctagtaacaaaagaaaata
agcCAAATAAGTAATTACAGTAACAAGTGTTAAACGGGCTAAGAAGTATA
TACTGCACTTAACTGAACTCGGATTCTAGAAATTACTTACTACGGTCTAA
GAACTATATAAT
Run BLAST on NCBI

protein sequence of TCONS_00050365-protein

>TCONS_00050365-protein ID=TCONS_00050365-protein|Name=TCONS_00050365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MNDFQDFGDIQNCYKIMVIGESGVGKSSLIRRLLLGSFSSCTSTTVGVDR
KITRFNLGDGEETVQLQLLDAAGSYKFKGILKSYMSSIDAIVFMYDISKK
ETFACLPMWTNLLNGANTKRNLTKVLVGNKLDLPREVKTKNAVNYGDFEG
MIPMETSVKNGESVDLVFKRIVAELKMRKQFPTI
Run BLAST on NCBI

transcript from alignment at scaffold_169:350623..352334

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050365 ID=TCONS_00050365|Name=TCONS_00050365|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at scaffold_169:350623..352334 (Clytia hemisphaerica)
ATTATATAGTTCTTAGACCGTAGTAAGTAATTTCTAGAATCCGAGTTCAG
TTAAGTGCAGTATATACTTCTTAGCCCGTTTAACACTTGTTACTGTAATT
ACTTATTTGgcttattttcttttgttactagatgaaaaaatacaaaagaa
gatgaatgattttcaagatttcgGAGATATACAAAACTGTTACAAGATTA
TGGTCATTGGTGAGTCTGGTGTCGGAAAAAGTTCATTAATTCGTAGGCTG
TTACTTGGTAGTTTCTCATCCTGCACAAGTACGACCGTTGGAGTTGACCG
AAAAATCACTAGATTCAATCTAGGAGATGGAGAAGAGACAGTACAGTTAC
AGCTTCTTGATGCAGCTGGATCTTACAAATTTAAAGGGATTTTAAAGAGC
TATATGTCAAGTATAGATGCGATTGTTTTCATGTATGATATTAGCAAGAA
AGAAACATTTGCTTGTTTACCGATGTGGACCAATCTGCTAAATGGTGCAA
ATACAAAAAGGAATTTAACCAAAGTTCTTGTTGGGAATAAACTTGATTTG
CCACGTGAAGTGAAAACGAAAAATGCAGTTAATTATGGAGACTTTGAGGG
TATGATACCAATGGAAACGTCAGTGAAGAATGGTGAAAGTGTTGATTTAG
TTTTCAAAAGGATCGTGGCTGAACTTAAAATGCGGAAACAGTTTCCAACT
ATTTGACAATAAATCATTTATGCTGACTTCATCTGTAGCCAGCTCGGGAA
ATTGCATAAAATCGCACTGAAAGTCTGTTGTCAAATTTCGCAGTTTTTTT
CTGCTGAATTTGTCATCACTCGTCTTTGAACGAAGAGCGGGGTTACAGGG
TGACGAACGAGGTCTCAAAATCATGTGCAATTGGTAGAAAATTTTAAAGT
AGACTTTTCACCCTATGATCTTAATTTCCTACCTAGGGATTTTTTACAAT
CATTCTTGACAGTAAGGATACTTGGGTAGACAAAGTGGGATTTTGCTCTT
GTGTTTATGGTCGTTGGTCATACAgttgacgttctactatttaatacgct
ctattattcgataatactAAAattcaccgtcaacaagaaactcttaaacg
acattctactattcgttgcgctcccttattcgacgaAAATTatattcccc
ttgaaaatcgaattagagagtatcAACTGTAATTTCAAATGACAATGGCT
TCAATTTGAAGTTGTTGCGTAGAATGACAGCGCACCCACTGCGGTGTGCA
ACGTTGCGAATATTTTGCAGCGCTGAGAAACTATGCAACTTTCCGAACTT
GTAGGGTACTGTACAAACTTCATTGATTGTGCTGAAATTCGGATAAGCTC
TCAAGctctttaaaattcaaaaggaTGAAGTTTGTTTAAGGTTACACATG
GTATAGCTCCTCAACGTTGAATTTACCGGGTAAAAGCAGGTTAAGACTAT
GTCTTTTTCTTATGATGAATTTGTGTACATAAGGTCCGAATGAAAATGAT
ATTACCAAAGTATAAACATTCTTCAGTAATAATTTTTGTACATATTGCAT
GGTATATTTAGATTAATATAAGCTCTAGAAATTGTTCCGGTTGTTGTCTT
TTTACTTACTCTAATTTTTGCGagtaataaaattttgataaattgtcGTT
AAAACCCGGGGGATACTAGGTGGCCAAGCTAAAGTTCGAAAGCTAAAATT
CGAAAATAGAAC

Coding sequence (CDS) from alignment at scaffold_169:350623..352334

>TCONS_00050365 ID=TCONS_00050365|Name=TCONS_00050365|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_169:350623..352334 (Clytia hemisphaerica)
atgaatgattttcaagatttcgGAGATATACAAAACTGTTACAAGATTAT
GGTCATTGGTGAGTCTGGTGTCGGAAAAAGTTCATTAATTCGTAGGCTGT
TACTTGGTAGTTTCTCATCCTGCACAAGTACGACCGTTGGAGTTGACCGA
AAAATCACTAGATTCAATCTAGGAGATGGAGAAGAGACAGTACAGTTACA
GCTTCTTGATGCAGCTGGATCTTACAAATTTAAAGGGATTTTAAAGAGCT
ATATGTCAAGTATAGATGCGATTGTTTTCATGTATGATATTAGCAAGAAA
GAAACATTTGCTTGTTTACCGATGTGGACCAATCTGCTAAATGGTGCAAA
TACAAAAAGGAATTTAACCAAAGTTCTTGTTGGGAATAAACTTGATTTGC
CACGTGAAGTGAAAACGAAAAATGCAGTTAATTATGGAGACTTTGAGGGT
ATGATACCAATGGAAACGTCAGTGAAGAATGGTGAAAGTGTTGATTTAGT
TTTCAAAAGGATCGTGGCTGAACTTAAAATGCGGAAACAGTTTCCAACTA
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031892XLOC_031892Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050365-proteinTCONS_00050365-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050365-exon-scaffold_169-1491911889:350623..352334TCONS_00050365-exon-scaffold_169-1491911889:350623..352334Clytia hemisphaericaexon
TCONS_00050365-exon-scaffold_169-1510915933:350623..352334TCONS_00050365-exon-scaffold_169-1510915933:350623..352334Clytia hemisphaericaexon
TCONS_00050365-exon-scaffold_169-1575043694:350623..352334TCONS_00050365-exon-scaffold_169-1575043694:350623..352334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:350623..352334 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.1593	66.8679	25.2564	18.5648	9.35865	6.5904	17.3891	21.2514	14.2222	20.0064	14.7075	10.9729	10.2041	6.65172	7.72041	7.52283	9.69278	18.2713	9.6856	10.109	19.5131	17.7665	46.091	37.3268	12.3168	8.1878	4.01346	5.63043	56.2761	54.587
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR025662Sigma_54_int_dom_ATP-bd_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00050365 vs. Swiss-Prot (Human)
Match: RAB30 (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.903e-27
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = -2 
Query: 1037 YKIMVIGESGVGKSSLIRRLLLGSFSSCTSTTVGVDRKITRFNLGDGEETVQLQLLDAAGSYKFKGILKSYMSSIDAIVFMYDISKKETFACLPMWTNLLNGANTKRNLTKVLVGNKLDLP--REVKTKNAVNYGDFEGMIPMETSVKNGESVDLVFKRIVAEL 1522
            +KI++IG +GVGK+ L+RR   G F      T+GVD  I    +    E V+LQ+ D AG  +F+ I +SY  S +A++  YDI+ +E+F CLP W   +    + + +T VLVGNK+DL   REV  + A  + + + M  +ETS K  ++V+ +F  +   L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING--EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
The following BLAST results are available for this feature:
BLAST of TCONS_00050365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB303.903e-2737.20Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
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