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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050365 ID=TCONS_00050365|Name=TCONS_00050365|organism=Clytia hemisphaerica|type=transcript|length=1712bp GTTCTATTTTCGAATTTTAGCTTTCGAACTTTAGCTTGGCCACCTAGTAT CCCCCGGGTTTTAACgacaatttatcaaaattttattactCGCAAAAATT AGAGTAAGTAAAAAGACAACAACCGGAACAATTTCTAGAGCTTATATTAA TCTAAATATACCATGCAATATGTACAAAAATTATTACTGAAGAATGTTTA TACTTTGGTAATATCATTTTCATTCGGACCTTATGTACACAAATTCATCA TAAGAAAAAGACATAGTCTTAACCTGCTTTTACCCGGTAAATTCAACGTT GAGGAGCTATACCATGTGTAACCTTAAACAAACTTCAtccttttgaattt taaagagCTTGAGAGCTTATCCGAATTTCAGCACAATCAATGAAGTTTGT ACAGTACCCTACAAGTTCGGAAAGTTGCATAGTTTCTCAGCGCTGCAAAA TATTCGCAACGTTGCACACCGCAGTGGGTGCGCTGTCATTCTACGCAACA ACTTCAAATTGAAGCCATTGTCATTTGAAATTACAGTTgatactctctaa ttcgattttcaaggggaatatAATTTtcgtcgaataagggagcgcaacga atagtagaatgtcgtttaagagtttcttgttgacggtgaatTTTagtatt atcgaataatagagcgtattaaatagtagaacgtcaacTGTATGACCAAC GACCATAAACACAAGAGCAAAATCCCACTTTGTCTACCCAAGTATCCTTA CTGTCAAGAATGATTGTAAAAAATCCCTAGGTAGGAAATTAAGATCATAG GGTGAAAAGTCTACTTTAAAATTTTCTACCAATTGCACATGATTTTGAGA CCTCGTTCGTCACCCTGTAACCCCGCTCTTCGTTCAAAGACGAGTGATGA CAAATTCAGCAGAAAAAAACTGCGAAATTTGACAACAGACTTTCAGTGCG ATTTTATGCAATTTCCCGAGCTGGCTACAGATGAAGTCAGCATAAATGAT TTATTGTCAAATAGTTGGAAACTGTTTCCGCATTTTAAGTTCAGCCACGA TCCTTTTGAAAACTAAATCAACACTTTCACCATTCTTCACTGACGTTTCC ATTGGTATCATACCCTCAAAGTCTCCATAATTAACTGCATTTTTCGTTTT CACTTCACGTGGCAAATCAAGTTTATTCCCAACAAGAACTTTGGTTAAAT TCCTTTTTGTATTTGCACCATTTAGCAGATTGGTCCACATCGGTAAACAA GCAAATGTTTCTTTCTTGCTAATATCATACATGAAAACAATCGCATCTAT ACTTGACATATAGCTCTTTAAAATCCCTTTAAATTTGTAAGATCCAGCTG CATCAAGAAGCTGTAACTGTACTGTCTCTTCTCCATCTCCTAGATTGAAT CTAGTGATTTTTCGGTCAACTCCAACGGTCGTACTTGTGCAGGATGAGAA ACTACCAAGTAACAGCCTACGAATTAATGAACTTTTTCCGACACCAGACT CACCAATGACCATAATCTTGTAACAGTTTTGTATATCTCcgaaatcttga aaatcattcatcttcttttgtattttttcatctagtaacaaaagaaaata agcCAAATAAGTAATTACAGTAACAAGTGTTAAACGGGCTAAGAAGTATA TACTGCACTTAACTGAACTCGGATTCTAGAAATTACTTACTACGGTCTAA GAACTATATAAT Run BLAST on NCBI protein sequence of TCONS_00050365-protein >TCONS_00050365-protein ID=TCONS_00050365-protein|Name=TCONS_00050365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MNDFQDFGDIQNCYKIMVIGESGVGKSSLIRRLLLGSFSSCTSTTVGVDR KITRFNLGDGEETVQLQLLDAAGSYKFKGILKSYMSSIDAIVFMYDISKK ETFACLPMWTNLLNGANTKRNLTKVLVGNKLDLPREVKTKNAVNYGDFEG MIPMETSVKNGESVDLVFKRIVAELKMRKQFPTI Run BLAST on NCBI transcript from alignment at scaffold_169:350623..352334 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050365 ID=TCONS_00050365|Name=TCONS_00050365|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at scaffold_169:350623..352334 (Clytia hemisphaerica) ATTATATAGTTCTTAGACCGTAGTAAGTAATTTCTAGAATCCGAGTTCAG
TTAAGTGCAGTATATACTTCTTAGCCCGTTTAACACTTGTTACTGTAATT
ACTTATTTGgcttattttcttttgttactagatgaaaaaatacaaaagaa
gatgaatgattttcaagatttcgGAGATATACAAAACTGTTACAAGATTA
TGGTCATTGGTGAGTCTGGTGTCGGAAAAAGTTCATTAATTCGTAGGCTG
TTACTTGGTAGTTTCTCATCCTGCACAAGTACGACCGTTGGAGTTGACCG
AAAAATCACTAGATTCAATCTAGGAGATGGAGAAGAGACAGTACAGTTAC
AGCTTCTTGATGCAGCTGGATCTTACAAATTTAAAGGGATTTTAAAGAGC
TATATGTCAAGTATAGATGCGATTGTTTTCATGTATGATATTAGCAAGAA
AGAAACATTTGCTTGTTTACCGATGTGGACCAATCTGCTAAATGGTGCAA
ATACAAAAAGGAATTTAACCAAAGTTCTTGTTGGGAATAAACTTGATTTG
CCACGTGAAGTGAAAACGAAAAATGCAGTTAATTATGGAGACTTTGAGGG
TATGATACCAATGGAAACGTCAGTGAAGAATGGTGAAAGTGTTGATTTAG
TTTTCAAAAGGATCGTGGCTGAACTTAAAATGCGGAAACAGTTTCCAACT
ATTTGACAATAAATCATTTATGCTGACTTCATCTGTAGCCAGCTCGGGAA
ATTGCATAAAATCGCACTGAAAGTCTGTTGTCAAATTTCGCAGTTTTTTT
CTGCTGAATTTGTCATCACTCGTCTTTGAACGAAGAGCGGGGTTACAGGG
TGACGAACGAGGTCTCAAAATCATGTGCAATTGGTAGAAAATTTTAAAGT
AGACTTTTCACCCTATGATCTTAATTTCCTACCTAGGGATTTTTTACAAT
CATTCTTGACAGTAAGGATACTTGGGTAGACAAAGTGGGATTTTGCTCTT
GTGTTTATGGTCGTTGGTCATACAgttgacgttctactatttaatacgct
ctattattcgataatactAAAattcaccgtcaacaagaaactcttaaacg
acattctactattcgttgcgctcccttattcgacgaAAATTatattcccc
ttgaaaatcgaattagagagtatcAACTGTAATTTCAAATGACAATGGCT
TCAATTTGAAGTTGTTGCGTAGAATGACAGCGCACCCACTGCGGTGTGCA
ACGTTGCGAATATTTTGCAGCGCTGAGAAACTATGCAACTTTCCGAACTT
GTAGGGTACTGTACAAACTTCATTGATTGTGCTGAAATTCGGATAAGCTC
TCAAGctctttaaaattcaaaaggaTGAAGTTTGTTTAAGGTTACACATG
GTATAGCTCCTCAACGTTGAATTTACCGGGTAAAAGCAGGTTAAGACTAT
GTCTTTTTCTTATGATGAATTTGTGTACATAAGGTCCGAATGAAAATGAT
ATTACCAAAGTATAAACATTCTTCAGTAATAATTTTTGTACATATTGCAT
GGTATATTTAGATTAATATAAGCTCTAGAAATTGTTCCGGTTGTTGTCTT
TTTACTTACTCTAATTTTTGCGagtaataaaattttgataaattgtcGTT
AAAACCCGGGGGATACTAGGTGGCCAAGCTAAAGTTCGAAAGCTAAAATT
CGAAAATAGAAC Coding sequence (CDS) from alignment at scaffold_169:350623..352334 >TCONS_00050365 ID=TCONS_00050365|Name=TCONS_00050365|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_169:350623..352334 (Clytia hemisphaerica) atgaatgattttcaagatttcgGAGATATACAAAACTGTTACAAGATTAT GGTCATTGGTGAGTCTGGTGTCGGAAAAAGTTCATTAATTCGTAGGCTGT TACTTGGTAGTTTCTCATCCTGCACAAGTACGACCGTTGGAGTTGACCGA AAAATCACTAGATTCAATCTAGGAGATGGAGAAGAGACAGTACAGTTACA GCTTCTTGATGCAGCTGGATCTTACAAATTTAAAGGGATTTTAAAGAGCT ATATGTCAAGTATAGATGCGATTGTTTTCATGTATGATATTAGCAAGAAA GAAACATTTGCTTGTTTACCGATGTGGACCAATCTGCTAAATGGTGCAAA TACAAAAAGGAATTTAACCAAAGTTCTTGTTGGGAATAAACTTGATTTGC CACGTGAAGTGAAAACGAAAAATGCAGTTAATTATGGAGACTTTGAGGGT ATGATACCAATGGAAACGTCAGTGAAGAATGGTGAAAGTGTTGATTTAGT TTTCAAAAGGATCGTGGCTGAACTTAAAATGCGGAAACAGTTTCCAACTA TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050365-exon-scaffold_169-1491911889:350623..352334 | TCONS_00050365-exon-scaffold_169-1491911889:350623..352334 | Clytia hemisphaerica | exon |
TCONS_00050365-exon-scaffold_169-1510915933:350623..352334 | TCONS_00050365-exon-scaffold_169-1510915933:350623..352334 | Clytia hemisphaerica | exon |
TCONS_00050365-exon-scaffold_169-1575043694:350623..352334 | TCONS_00050365-exon-scaffold_169-1575043694:350623..352334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_169 | supercontig | scaffold_169:350623..352334 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003924 |
GTPase activity |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00050365 vs. Swiss-Prot (Human)
Match: RAB30 (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.903e-27 Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = -2
Query: 1037 YKIMVIGESGVGKSSLIRRLLLGSFSSCTSTTVGVDRKITRFNLGDGEETVQLQLLDAAGSYKFKGILKSYMSSIDAIVFMYDISKKETFACLPMWTNLLNGANTKRNLTKVLVGNKLDLP--REVKTKNAVNYGDFEGMIPMETSVKNGESVDLVFKRIVAEL 1522
+KI++IG +GVGK+ L+RR G F T+GVD I + E V+LQ+ D AG +F+ I +SY S +A++ YDI+ +E+F CLP W + + + +T VLVGNK+DL REV + A + + + M +ETS K ++V+ +F + L
Sbjct: 10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING--EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT-VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
The following BLAST results are available for this feature:
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