|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050322 ID=TCONS_00050322|Name=TCONS_00050322|organism=Clytia hemisphaerica|type=transcript|length=2479bp
taatccacgcgaaatctttaaattctcgtctcgcgaaaatttatccacgt
aAGAGGAGCTACTACCAATAATTAGGGTTAAGGTAGTTAGTAATTTTAAA
AAACCCAGGGgtgtactacccttgtcgaccgacgggggtgctccgctgag
gttcgaaaaatggaccctacgtgggactcgaaatttgcgaaaaaagtgac
cctgaatgggactgaaattccaaaattttctacttttcccccaaattttc
caaaaaaagacaccctacgagggactaatttttctattttggtgtttttg
cgaccctacctgggactcgtggaggttagaaaaggtaccctgaccagcgg
agcatccccgtaacccatcttgccctagtaccccccggtttaaaaaatta
caattacacCTTAAAATTGAATCTTTGTTAAAGGACCCTTATATTCATCT
GATTAAAAGAGGGAAAGTTTGGGGGATCAAGTCAAagtccaaaaatcaaa
tgagaGAGGCGATTTttctatttacaaaattttgattttctttttttact
tctAAGTCAATGTatatacaaaaaattaattttagggTGTTAGTTACCAT
TGATGTAATCCATAAAATCCCGTCAACTTGACACATCACTTGCCTGTTAC
TGAAATTACAAGAATAAATTTATAGTAACCATGAAAAGCTTGTATTTTGG
GACAAAGGAGGGATTTAGAAAAAAACTATGTATTACTTAAGTTTCTATCC
attgaaaatttctcatttGCCATcagcttaaaaatcaaaacacagtACAA
AATGCTCATCAAGATTAAGAAAATGGGCAGAGGATAGGGTAATGTTGAAA
GGTTAAGTAAAAGGAATCTGTCTTTCAAAATTCCTTGAACTTAAAACCCT
TTCATGAAAAGTTACCACCTTTAAGGAAATGCTGTAGTGAGCAACTATTT
GCTGCAAGCTTTCCCCAATATGCGATCCTTAAGAAGAAACaaagttttta
attaaaaatgatGCTGGTTTAAAATGTACTACAGCTGGCCCTAAAAACTT
TCAAAGGTTTGtaattttgcttgaaaagagACAGTAGATAAGATTTATGA
TTCACGTACAAAAGTTCTGAAAACAccataaaaactattttaaagGAAGC
ACGTTAAATACTAACCGATTCTCAAACTTTCTGAAACATTGATGTCTCAT
GTTCGAGCAGTAGTGGCTTCCTGAAACAAAAAACAGAAGTTTTAGTAAAG
CTATAAAGAGAACTATTTACAACatatatacaaaaacaaacatctattGA
TTAATTTCCAGTCTATCATTGATTCTTGTTGCAagtggagcaaaattcaa
gggAGACTTTATTGTTAGAAACATGAAGACAGACACCACCATTGTAATCA
ACTGCATCTTCATCATCGTCATGTGTGGGCATCCTTTTGCCTGGGAGCAG
CCTCTCGTAAAGTTTTGGACCTGGAGGTGTTTTTGCTCCTATTGAAACTC
CTGGTACTGTAGAGACAGCTTTTAAAACTGAAGAGAGCATGGTCTGATTA
CGAATAACACTCATCAAATAAGCCACTTCATCTTCTAGAGTTTTGATCTT
TTTCTCTTGTTTGGTAGTTTTCAATGAGAGTTTGTTATTTTGGCTCCTAA
GAGTTTTGACTTCAGTTTCGAGGTTGGATAGGTGCTTCTTCTTTCTTTGC
CTATTCAATCGTGCCATTTCAGCATTTTTCCTACTCCTATCAACAACAAT
TACTTTACCATTTTCATCCTTGTAAGAAAAGGTTTCATCATCACATTTAA
GTACATCAATATTATGGTCACTTTTAGAgtcaatttttgaagatttggaC
AGGATCTCAGCAGGCTCACAGTCACtaagatttctttttcttgtCACTAC
TGGCTTAGCAATGCTTTGACGAGAAACTGGCTCGTTATTTACAACAGCAT
TATCAGGAAGTTCATCTACATTTATCTCATCAGTATCAGACACAATTACA
ACTGGTTCAATTGTTTGGTCTGGTAAAGAATAAGGATGATCATGAATATT
GGAACTTACACTATCAGATCGACTGAAATCTTTGATGTTGGTAAATTCAA
CATCATTTATGACTGGTGGCAAAACGTCATCCAACAATGTTTCAAGCGAG
AAGTTTTGACCACTAAATCCACTGTCATCGCTGTAAGCTGGTGAACTATA
CAAATCATTATCGTAGCCAAGGCCCTCGTAACATAATAATTCATCCTGGT
CACAAAATATATCTTTAACATCCATTTTACAATCAGTTCTTAAAGATTTC
CAAATTACGAAAACGAACACTTCCAACGTCCAAAGTCTTGGCGGGTGGAA
TGAATGAAATTACATGAACTGAACGAAAGAGAAAGACAAAATCGTCGCGA
AAACGTTTTTGACAAATAATTATTATACAGACCATCTTATTAATtctaaa
gtttgaaattttgaagcaaaCTAAATCGA Run BLAST on NCBI transcript from alignment at scaffold_169:415623..419444+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050322 ID=TCONS_00050322|Name=TCONS_00050322|organism=Clytia hemisphaerica|type=transcript|length=3822bp|location=Sequence derived from alignment at scaffold_169:415623..419444+ (Clytia hemisphaerica)
taatccacgcgaaatctttaaattctcgtctcgcgaaaatttatccacgt
aAGAGGAGCTACTACCAATAATTAGGGTTAAGGTAGTTAGTAATTTTAAA
AAACCCAGGGgtgtactacccttgtcgaccgacgggggtgctccgctgag
gttcgaaaaatggaccctacgtgggactcgaaatttgcgaaaaaagtgac
cctgaatgggactgaaattccaaaattttctacttttcccccaaattttc
caaaaaaagacaccctacgagggactaatttttctattttggtgtttttg
cgaccctacctgggactcgtggaggttagaaaaggtaccctgaccagcgg
agcatccccgtaacccatcttgccctagtaccccccggtttaaaaaatta
caattacacCTTAAAATTGAATCTTTGTTAAAGGACCCTTATATTCATCT
GATTAAAAGAGGGAAAGTTTGGGGGATCAAGTCAAagtaaaacaagcaac
atgctgaatggacctaccttgaTCAATATCAGATAAAAGTAGGTATTCTA
CATattttactattggtattgagcaaacacaataagttttagaacaatgc
aaaaacgtctgatttattttcttttatcattgtgtaacttggtcgtcttt
ttttgaaaattttatgacaaaaaaaattttccttagaagaattacttcag
ccacattttaaggtgcctagcactctatctttctgacaaaaatcaggaaa
aactaataaaGCAATTtcgcaccaagtccaaaaaaccttatttttaggta
gtttttggcccaaatttaccccaaatttttttttcaaaatcgggctccgt
cacttataggcattgctattttgtaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaattaa
aaaaaactaatgagccaatcccgagaaaagcttgtaacagacgaacggac
aacggtcaaattaaaggacctcccggtaggtccaaaaatcaaatgagaGA
GGCGATTTttctatttacaaaattttgattttctttttttacttctAAGT
CAATGTatatacaaaaaattaattttagggTGTTAGTTACCATTGATGTA
ATCCATAAAATCCCGTCAACTTGACACATCACTTGCCTGTTACTGAAATT
ACAAGAATAAATTTATAGTAACCATGAAAAGCTTGTATTTTGGGACAAAG
GAGGGATTTAGAAAAAAACTATGTATTACTTAAGTTTCTATCCattgaaa
atttctcatttGCCATcagcttaaaaatcaaaacacagtACAAAATGCTC
ATCAAGATTAAGAAAATGGGCAGAGGATAGGGTAATGTTGAAAGGTTAAG
TAAAAGGAATCTGTCTTTCAAAATTCCTTGAACTTAAAACCCTTTCATGA
AAAGTTACCACCTTTAAGGAAATGCTGTAGTGAGCAACTATTTGCTGCAA
GCTTTCCCCAATATGCGATCCTTAAGAAGAAACaaagtttttaattaaaa
atgatGCTGGTTTAAAATGTACTACAGCTGGCCCTAAAAACTTTCAAAGG
TTTGtaattttgcttgaaaagagACAGTAGATAAGATTTATGATTCACGT
ACAAAAGTTCTGAAAACAccataaaaactattttaaagGAAGCACGTTAA
ATACTAACCGATTCTCAAACTTTCTGAAACATTGATGTCTCATGTTCGAG
CAGTAGTGGCTTCCTGAAACAAAAAACAGAAGTTTTAGTAAAGCTATAAA
GAGAACTATTTACAACatatatacaaaaacaaacatctattGATTAATTT
CCAGTCTATCATTGATTCTTGTTGCAagtggagcaaaattcaagggAGAC
TTTATTGTTAGAAACATGAAGACAGACACCACCATTGTAATCAACTGCAT
CTTCATCATCGTCATGTGTGGGCATCCTTTTGCCTGGGAGCAGCCTCTCG
TAAAGTTTTGGACCTGGAGGTGTTTTTGCTCCTATTGAAACTCCTGGTAC
TGTAGAGACAGCTTTTAAAACTGAAGAGAGCATGGTCTGATTACGAATAA
CACTCATCAAATAAGCCACTTCATCTTCTAGAGTTTTGATCTTTTTCTCT
TGTTTGGTAGTTTTCAATGAGAGTTTGTTATTTTGGCTCCTAAGAGTTTT
GACTTCAGTTTCGAGGTTGGATAGGTGCTTCTTCTTTCTTTGCCTATTCA
ATCGTGCCATTTCAGCATTTTTCCTACTCCTATCAACAACAATTACTTTA
CCATTTTCATCCTTGTAAGAAAAGGTTTCATCATCACATTTAAGTACATC
AATATTATGGTCACTTTTAGAgtcaatttttgaagatttggaCAGGATCT
CAGCAGGCTCACAGTCACtaagatttctttttcttgtCACTACTGGCTTA
GCAATGCTTTGACGAGAAACTGGCTCGTTATTTACAACAGCATTATCAGG
AAGTTCATCTACATTTATCTCATCAGTATCAGACACAATTACAACTGGTT
CAATTGTTTGGTCTGGTAAAGAATAAGGATGATCATGAATATTGGAACTT
ACACTATCAGATCGACTGAAATCTTTGATGTTGGTAAATTCAACATCATT
TATGACTGGTGGCAAAACGTCATCCAACAATGTTTCAAGCGAGAAGTTTT
GACCACTAAATCCACTGTCATCGCTGTAAGCTGGTGAACTATACAAATCA
TTATCGTAGCCAAGGCCCTCGTAACATAATAATTCATCCTGGTCACAAAA
TATATCTTTAACATCCATTTTACAATCAGTTCTTAAAGATTTCCAAATTA
CGAAAACGAACACTTCCAACGTCCAAAGTCTTGGCGGGTGGAATGAATGA
AATTACATGAACTGAACGAAAGAGAAAGACAAAATCGTCGCGAAAACGTT
TTTGACAAATAATTATTATACAGACCATCTTATTAATtctaaagtttgaa
attttgaagcaaaCTAAATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050322-exon-scaffold_169-1491911889:415623..416108 | TCONS_00050322-exon-scaffold_169-1491911889:415623..416108 | Clytia hemisphaerica | exon |
| TCONS_00050322-exon-scaffold_169-1510915933:415623..416108 | TCONS_00050322-exon-scaffold_169-1510915933:415623..416108 | Clytia hemisphaerica | exon |
| TCONS_00050322-exon-scaffold_169-1575043694:415623..416108 | TCONS_00050322-exon-scaffold_169-1575043694:415623..416108 | Clytia hemisphaerica | exon |
| TCONS_00050322-exon-scaffold_169-1491911889:417452..419444 | TCONS_00050322-exon-scaffold_169-1491911889:417452..419444 | Clytia hemisphaerica | exon |
| TCONS_00050322-exon-scaffold_169-1510915933:417452..419444 | TCONS_00050322-exon-scaffold_169-1510915933:417452..419444 | Clytia hemisphaerica | exon |
| TCONS_00050322-exon-scaffold_169-1575043694:417452..419444 | TCONS_00050322-exon-scaffold_169-1575043694:417452..419444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:415623..419444 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
|
