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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005098 ID=TCONS_00005098|Name=TCONS_00005098|organism=Clytia hemisphaerica|type=transcript|length=1950bp
cttactctaccattttagaatctcatATTTGTGGTTCAAGTAATTTTGAC
AAGTTACTCGCCCACAGAATCAGAATCCAGACGTTTCTTGCATATTCGTT
TGCCGTAGGGTAAAAATGAGAAATGCGAAATTGATTAggcaaaatctttt
tgaaaaatcacccTACAAGGTTTGACTGCATCTTTTTATTCCACGAAGCA
ATTGcttccaaataaaaaaatatattaacaatgaatggttcagctttcta
gaaatccaaacttGAAtagcatagcttttaccaaaaaatagcactttagg
atcagaaacagtcaaaaaccagctatGAGTTACAGTAATTTGTTCCTTcc
atgttttgatctgaaattttcaagaGAGGTGTGGCCAACATAGTTCCCTT
GCTTATAATTTATAAGCAAAGTAAAAgttgtatttgtatttttaGGTATT
GCAGTACCCATTCCATTTAATttattcttaagattttttagTATAACACT
ACATCACTAAACAACACAATGTCTGAAACTGACCCCCTGGCAAAATTGGA
TCATAAACAGTGTCCTTTGCAGGCTGTCCTAGCCTAAATCCAAACAATAA
TTctccaaacaaaagaagaatttcCAAAGAAGGGTTATTAATTAATAAGT
TGTTGGGCAATGATACTGAAAATGCTTTTCTCCAAAATCATAGCTAGAAT
TGTCAGCATATATTCCTTAATTTTCCTGTTCATGTTAAGAAACGATATTT
TACTGCTTACAATACACACATGTCAACAAAAAGATTTTAACAGGGATAGA
TGTTACTGGGTTTAACATAACAAACATTCTGAATTTTATCTAGGGTTTAC
CAATCAAATAGAACTACAATGGGAAAAAAGAAGACAGTAGCGAGCGATGA
AAACATTGCTCTTGATGTTGAAAAACAAGAAGAATTCAACAAAAACCTTG
AAGAACTCAATGACGAAGAAATAGATTATGGAACGATCTATGTTGGTCAT
CTTCCAAGAGGGTTTTATGAGGATGAAATGAAGGcttatttttctcaatt
tgGTACAGTCAGTAAGGTGCGTCTAGCCAGAAGTAAAAAAACTGGTGGCT
ATAAGGGATATGGGTATGTTCAATTCACCAATTCAGATGTTGCAAAGATT
GCTGCTGATGCGATGAATAATTATTTGATGTTTGATAGACTTTTGAAATG
TCAGTATGTGGCTGAGGAAGATTTGCATCCCGCTATTTGGAAAGGTTACA
ACAAGAAATTTGTTTGGGCAGATCGTACTAAGAAACACAAGAAACTGTAC
AATAGAACAAGGACTGAAGATCAATTAAAGAAAACAGCTGACAAGCTGAT
CAAAAAGGATAACACACGTCGTAAGAAGCTGTTGGAACTTGGCATCAATT
ATGAGTTTGGTGGCTATGAGGGggcaatgaagaagaaaaaggttGCTAAG
ACACCTAAGACGAAAACAGccaaatccaaaatttcaaagaaaactcCTAA
AAAAGAGTTGTCAGAGGCTGCTCTCTAAAAACCCTTTTTGATGAAAATCT
GGAGTTTTTTAACTGAATGAAAATATCTatattgaaatgttttcaaatta
cTAGAGCTGTGTGTCCCATGCTAATCATGGAGGTCAATTTGTGAAAATCT
AACATGACCTTTAAAACGTGTTATAATGATTTAGGTCATGCAGTATCTTA
TTACATTTTTAAATAGTGTTTTTTATtgtatctgaaaaaaaaaacaatct
ctGGACTTgatattataaagtttttgaacGTTTTGTTATTGAACTATTTT
TTATTATCATATGACATAAGGTTTCTCTCTTATTTGCAAAAAAGAGGGCC
AGTATACAGTATGGTCAAAATTACACCAATCTAGCTTTGTTGCAAAAATG
ATGTTGTTGATAATTTGTTTTATGCTCTTCTAAATCTCTTTTTGATATTC Run BLAST on NCBI protein sequence of TCONS_00005098-protein >TCONS_00005098-protein ID=TCONS_00005098-protein|Name=TCONS_00005098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MGKKKTVASDENIALDVEKQEEFNKNLEELNDEEIDYGTIYVGHLPRGFY
EDEMKAYFSQFGTVSKVRLARSKKTGGYKGYGYVQFTNSDVAKIAADAMN
NYLMFDRLLKCQYVAEEDLHPAIWKGYNKKFVWADRTKKHKKLYNRTRTE
DQLKKTADKLIKKDNTRRKKLLELGINYEFGGYEGAMKKKKVAKTPKTKT
AKSKISKKTPKKELSEAAL Run BLAST on NCBI transcript from alignment at sc0000050:365555..367504 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005098 ID=TCONS_00005098|Name=TCONS_00005098|organism=Clytia hemisphaerica|type=transcript|length=1950bp|location=Sequence derived from alignment at sc0000050:365555..367504 (Clytia hemisphaerica)
GAATATCAAAAAGAGATTTAGAAGAGCATAAAACAAATTATCAACAACAT
CATTTTTGCAACAAAGCTAGATTGGTGTAATTTTGACCATACTGTATACT
GGCCCTCTTTTTTGCAAATAAGAGAGAAACCTTATGTCATATGATAATAA
AAAATAGTTCAATAACAAAACgttcaaaaactttataatatcAAGTCCag
agattgttttttttttcagatacaATAAAAAACACTATTTAAAAATGTAA
TAAGATACTGCATGACCTAAATCATTATAACACGTTTTAAAGGTCATGTT
AGATTTTCACAAATTGACCTCCATGATTAGCATGGGACACACAGCTCTAg
taatttgaaaacatttcaatatAGATATTTTCATTCAGTTAAAAAACTCC
AGATTTTCATCAAAAAGGGTTTTTAGAGAGCAGCCTCTGACAACTCTTTT
TTAGgagttttctttgaaattttggatttggCTGTTTTCGTCTTAGGTGT
CTTAGCaacctttttcttcttcattgccCCCTCATAGCCACCAAACTCAT
AATTGATGCCAAGTTCCAACAGCTTCTTACGACGTGTGTTATCCTTTTTG
ATCAGCTTGTCAGCTGTTTTCTTTAATTGATCTTCAGTCCTTGTTCTATT
GTACAGTTTCTTGTGTTTCTTAGTACGATCTGCCCAAACAAATTTCTTGT
TGTAACCTTTCCAAATAGCGGGATGCAAATCTTCCTCAGCCACATACTGA
CATTTCAAAAGTCTATCAAACATCAAATAATTATTCATCGCATCAGCAGC
AATCTTTGCAACATCTGAATTGGTGAATTGAACATACCCATATCCCTTAT
AGCCACCAGTTTTTTTACTTCTGGCTAGACGCACCTTACTGACTGTACca
aattgagaaaaataagCCTTCATTTCATCCTCATAAAACCCTCTTGGAAG
ATGACCAACATAGATCGTTCCATAATCTATTTCTTCGTCATTGAGTTCTT
CAAGGTTTTTGTTGAATTCTTCTTGTTTTTCAACATCAAGAGCAATGTTT
TCATCGCTCGCTACTGTCTTCTTTTTTCCCATTGTAGTTCTATTTGATTG
GTAAACCCTAGATAAAATTCAGAATGTTTGTTATGTTAAACCCAGTAACA
TCTATCCCTGTTAAAATCTTTTTGTTGACATGTGTGTATTGTAAGCAGTA
AAATATCGTTTCTTAACATGAACAGGAAAATTAAGGAATATATGCTGACA
ATTCTAGCTATGATTTTGGAGAAAAGCATTTTCAGTATCATTGCCCAACA
ACTTATTAATTAATAACCCTTCTTTGgaaattcttcttttgtttggagAA
TTATTGTTTGGATTTAGGCTAGGACAGCCTGCAAAGGACACTGTTTATGA
TCCAATTTTGCCAGGGGGTCAGTTTCAGACATTGTGTTGTTTAGTGATGT
AGTGTTATActaaaaaatcttaagaataaATTAAATGGAATGGGTACTGC
AATACCtaaaaatacaaatacaacTTTTACTTTGCTTATAAATTATAAGC
AAGGGAACTATGTTGGCCACACCTCtcttgaaaatttcagatcaaaacat
ggAAGGAACAAATTACTGTAACTCatagctggtttttgactgtttctgat
cctaaagtgctattttttggtaaaagctatgctaTTCaagtttggatttc
tagaaagctgaaccattcattgttaatatatttttttatttggaagCAAT
TGCTTCGTGGAATAAAAAGATGCAGTCAAACCTTGTAgggtgatttttca
aaaagattttgccTAATCAATTTCGCATTTCTCATTTTTACCCTACGGCA
AACGAATATGCAAGAAACGTCTGGATTCTGATTCTGTGGGCGAGTAACTT
GTCAAAATTACTTGAACCACAAATatgagattctaaaatggtagagtaag
Coding sequence (CDS) from alignment at sc0000050:365555..367504 >TCONS_00005098 ID=TCONS_00005098|Name=TCONS_00005098|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000050:365555..367504 (Clytia hemisphaerica)
TTAGAGAGCAGCCTCTGACAACTCTTTTTTAGgagttttctttgaaattt
tggatttggCTGTTTTCGTCTTAGGTGTCTTAGCaacctttttcttcttc
attgccCCCTCATAGCCACCAAACTCATAATTGATGCCAAGTTCCAACAG
CTTCTTACGACGTGTGTTATCCTTTTTGATCAGCTTGTCAGCTGTTTTCT
TTAATTGATCTTCAGTCCTTGTTCTATTGTACAGTTTCTTGTGTTTCTTA
GTACGATCTGCCCAAACAAATTTCTTGTTGTAACCTTTCCAAATAGCGGG
ATGCAAATCTTCCTCAGCCACATACTGACATTTCAAAAGTCTATCAAACA
TCAAATAATTATTCATCGCATCAGCAGCAATCTTTGCAACATCTGAATTG
GTGAATTGAACATACCCATATCCCTTATAGCCACCAGTTTTTTTACTTCT
GGCTAGACGCACCTTACTGACTGTACcaaattgagaaaaataagCCTTCA
TTTCATCCTCATAAAACCCTCTTGGAAGATGACCAACATAGATCGTTCCA
TAATCTATTTCTTCGTCATTGAGTTCTTCAAGGTTTTTGTTGAATTCTTC
TTGTTTTTCAACATCAAGAGCAATGTTTTCATCGCTCGCTACTGTCTTCT
TTTTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005098-exon-sc0000050-1491911889:365555..367504 | TCONS_00005098-exon-sc0000050-1491911889:365555..367504 | Clytia hemisphaerica | exon |
| TCONS_00005098-exon-sc0000050-1510915933:365555..367504 | TCONS_00005098-exon-sc0000050-1510915933:365555..367504 | Clytia hemisphaerica | exon |
| TCONS_00005098-exon-sc0000050-1575043694:365555..367504 | TCONS_00005098-exon-sc0000050-1575043694:365555..367504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:365555..367504 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00005098 vs. Swiss-Prot (Human)
Match: MK67I (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=NIFK PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.100e-22 Identity = 69/178 (38.76%), Postives = 107/178 (60.11%), Query Frame = 2
Query: 905 IALDVEKQEEFNKNLEELN--------DEEIDYGTIYVGHLPRGFYEDEMKAYFSQFGTVSKVRLARSXXXXXXXXXXXVQFTNSDVAKIAADAMNNYLMFDRLLKCQYVAEEDLHPAIWKGYNKKFVWADRTKKHKKLYNRTRTEDQLKKTADKLIKKDNTRRKKLLELGINYEFGG 1414
++L+ ++ EF K + ++ E++ G +YV HLP E ++ +YFSQFGTV++ RL+RSK+TG KGY +V+F + DVAKI A+ MNNYL +RLL+C ++ E +H ++K +N F + K YNR RT Q + ++ KK+ RKKL + GI+Y+F
Sbjct: 12 LSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQP--SYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPS 187
The following BLAST results are available for this feature:
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