TCONS_00051752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051752
Unique NameTCONS_00051752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051752 ID=TCONS_00051752|Name=TCONS_00051752|organism=Clytia hemisphaerica|type=transcript|length=606bp
AATCAGGACCCATAGATTGTTGATAATCGGGCTGGTATTTTCATCACATG
TAACAACCGTCCGAAATACGGCGACGATCAAAAAGACGTGGAAGATAGGA
TGGAGTACATGCAGACAAAGGAAATTCCTGAGGACGAGCGTGACTCGTTT
GCAGCCACATGGATCCGTGAGCATGCGTTTGAATGCCTCCTCTGGATGTG
CAATATGATGCGCgaaaatgatgaatttattgatGAGAAGGAACTGTTCT
TTGTGAAAACAGTTGACGACTACGTACCAGTAAAGATTAACGTGTGTGTA
CCAGATGAAGAACTTCGAAAGCTCGCTGGTATTCgtgataaaaaatcaac
caacaaGACAACGCCGCCCGTGTCCAACCGAATCGATACAACAGCTTATA
TAGACGATGGTCAACAACCGGGCTTTTCAAAGTGGTCAGATGAGCACAAT
CCACCCCAGTGTGATTCAACTGATTCTGAAGAAAGGACAGCTGAGAGACT
ACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCACATTGAAACAA
CTGATGAAGACACAGAAGAAGAACAACCTCGAAAAAGAAATTCCTACGAA
CCCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_204:39521..40619+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051752 ID=TCONS_00051752|Name=TCONS_00051752|organism=Clytia hemisphaerica|type=transcript|length=1099bp|location=Sequence derived from alignment at scaffold_204:39521..40619+ (Clytia hemisphaerica)
AATCAGGACCCATAGATTGTTGATAATCGGGCTGGTGAGTACAGTGATTT
TGTTTAGCTTGTTTTCTTATTTGCTTTTTTTCCAATGGTTGCTTTGAATA
TAGCCTTTTTCGCGTTGTGGAATAGACACCCTAAGTGACTACGATCATTC
TTTTACGTCAGGTATTTTCATCACATGTAACAACCGTCCGAAATACGGCG
ACGATCAAAAAGACGTGGAAGATAGGATGGAGTACATGCAGACAAAGGAA
ATTCCTGAGGACGAGCGTGACTCGTTTGCAGCCACATGGATCCGTGAGCA
TGCGTTTGAATGCCTCCTCTGGATGTGCAATATGATGCGCgaaaatgatg
aatttattgatGAGAAGGAACTGTTCTTTGTGAAAACAGTTGACGACTAC
GTACCAGTAAAGGTAAAGTTTTATGTTGTATTTTACGTGAAGTTATTTAG
TTTAGAGTGATGTATTTCATTTTTGAGCACTTAATTTACAGAAACAATTA
ACTTGTGGTAACTTAAACACTgtcatttttgaatttaaaaccacTACCGT
TTCTTCTAGATTAACGTGTGTGTACCAGATGAAGAACTTCGAAAGCTCGC
TGGTATTCgtgataaaaaatcaaccaacaaGACAACGCCGCCCGTGTCCA
ACCGAATCGATACAACAGCTTATATAGACGATGGTCAACAACCGGGCTTT
TCAAAGTGGTCAGATGAGCACAATCCACCCCAGTGTGATTCAACTGATTC
TGAAGAAAGGACAGGTAAATTCTTTCACTTACTTGCTAAGTGACACTTGA
AATTTAATGTGCATTTACAAATGCATCAAAACACCTAATAACAAGTTGAC
AAAACTGTCATTTGTAAGACTTTTTTATCCTTTTCGTTTTTAGCTGAGAG
ACTACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCACATTGAAA
CAACTGATGAAGACACAGAAGAAGGTAACTCTTTAGACATTGAGACTCTT
GGTAATCATTCATCTCTCCAGTAGATATTTTTACTTAAATACGTTCAACA
CTTTGCTTTTTTAGAACAACCTCGAAAAAGAAATTCCTACGAACCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032761XLOC_032761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051752-exon-scaffold_204-1491911889:39521..39554TCONS_00051752-exon-scaffold_204-1491911889:39521..39554Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1510915933:39521..39554TCONS_00051752-exon-scaffold_204-1510915933:39521..39554Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1575043694:39521..39554TCONS_00051752-exon-scaffold_204-1575043694:39521..39554Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1491911889:39682..39932TCONS_00051752-exon-scaffold_204-1491911889:39682..39932Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1510915933:39682..39932TCONS_00051752-exon-scaffold_204-1510915933:39682..39932Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1575043694:39682..39932TCONS_00051752-exon-scaffold_204-1575043694:39682..39932Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1491911889:40080..40284TCONS_00051752-exon-scaffold_204-1491911889:40080..40284Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1510915933:40080..40284TCONS_00051752-exon-scaffold_204-1510915933:40080..40284Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1575043694:40080..40284TCONS_00051752-exon-scaffold_204-1575043694:40080..40284Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1491911889:40414..40494TCONS_00051752-exon-scaffold_204-1491911889:40414..40494Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1510915933:40414..40494TCONS_00051752-exon-scaffold_204-1510915933:40414..40494Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1575043694:40414..40494TCONS_00051752-exon-scaffold_204-1575043694:40414..40494Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1491911889:40585..40619TCONS_00051752-exon-scaffold_204-1491911889:40585..40619Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1510915933:40585..40619TCONS_00051752-exon-scaffold_204-1510915933:40585..40619Clytia hemisphaericaexon
TCONS_00051752-exon-scaffold_204-1575043694:40585..40619TCONS_00051752-exon-scaffold_204-1575043694:40585..40619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:39521..40619 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550673	0.0117374	0	0	0.575514	1.37133	0.911001	4.66416	2.94799	3.00892	4.52468e-08	1.902e-06	0.028379	3.40413	0.969051	1.5521	1.73842	4.39439e-06	3.63763	2.66982	3.08357e-06	0	0.00418336	0.185561	1.15629	4.20049	0	0	1.6406	0.000109643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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