TCONS_00051821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051821
Unique NameTCONS_00051821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051821 ID=TCONS_00051821|Name=TCONS_00051821|organism=Clytia hemisphaerica|type=transcript|length=553bp
TTTAGCTGGAGCTCGACAAACTGCCAGAGCTTCTACTGAAGGTACAAAGA
AAGCAGCCTCCAACAATGCAGCGACTGGCATCTCACTTGATGAAGCCAAA
CAAATTCTGAATATCAAGGAGTTGAATCCAGAGGAAGTACAAAAGAGTTA
TGATTACTTGTTCAAAATCAACGATAAAAAGGCTGGAGGATCATTCTACC
TGCAGTCGAAGGTTTTTCGAGCGAAAGAGAGGCTAGACATGgaattcaaa
aatgaaaatgaaagcacGAATACTCAACCGAATGAAGAAGGAAAAAGCTG
ATAAGTTTTTTTGctaagaatctttttttaataattttttttggaagcaA
GATGACCTTTATTGTACAGAAGATATTGGacatatttaatttttatattG
GAAAGAAATCTCGTGAATTTATGTTACATTTTCAAGCTTATCACCTTATT
TTGTCTAACTAGCTATCATAACGATGGGTTTCCATCACATTTTgacaaag
atataaaaaaatagaataCAAAAATTTAAGTTCTAAGACGATGTCATTTT
GGG
Run BLAST on NCBI

protein sequence of TCONS_00051821-protein

>TCONS_00051821-protein ID=TCONS_00051821-protein|Name=TCONS_00051821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
LAGARQTARASTEGTKKAASNNAATGISLDEAKQILNIKELNPEEVQKSY
DYLFKINDKKAGGSFYLQSKVFRAKERLDMEFKNENESTNTQPNEEGKS
Run BLAST on NCBI

transcript from alignment at scaffold_205:278561..279973+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051821 ID=TCONS_00051821|Name=TCONS_00051821|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at scaffold_205:278561..279973+ (Clytia hemisphaerica)
TTTAGCTGGAGCTCGACAAACTGCCAGAGCTTCTACTGAAGGTACAAAGA
AAGCAGCCTCCAACAATGCAGCGACTGGCATCTCACTTGATGTAAgacaa
attcttaaaaaaatgacatttttttaagaattttatctACTTAATGAGAC
TTTATTTATTTCATGGCTTCATGGTTGTTCTATTTGCCAAAAAAGCAACG
ATTGTCTGTCTTTGACTGGGTAAATGATTTGTCGTGTAAAATGGATTTTC
TGATATGAATGAAACTCGACTTTAAAACCTGAATTTTTTCCAAATGtata
ataatttttcttcttttcatttagGAAGCCAAACAAATTCTGAATATCAA
GGAGTTGAATCCAGAGGAAGTACAAAAGGTAGTAAAAGAAAAGGGGAAAA
TCCTTAGGATCCGTAGAATCTTTCGTGTGACGCAATAACTTTCAAAAGTA
GATaggattttgaaacttttttgagagggggccTGTGACTAAGGCatggc
aaaagtttttatggaCAAAAAACTGACGTTGTAGGCAAAGCTCCTAACCT
TTGTCGGTTTGGCTGTAAAAACTTCTTTCAGGCCTAATTCGCGTTTAAAT
TTACCCAGATGTATCCAACTTTCGGAAACTTATTTGATATTTTCCTAtgg
ttgaaaatgtttttccttCTTTTAGAGTTATGATTACTTGTTCAAAATCA
ACGATAAAAAGGCTGGAGGATCATTCTACCTGCAGTCGAAGGTATAGGCA
TAATTGTGGAAAGGCTTCCCATCTGCCTCATTCTACTATTTACCCCTTTC
ACAATTTAATGTACCCTCATTATCCGATTTGCTTGCACAAAGATTTCATT
ACTGAACAATATGaatatcaaatttgattcttaggCGAATACTGGGAGTG
TTTACTTTCATAACTTATTTAGCTTTTAGGGGAGGGCCTCAGGGTTAGCT
TTACACTAAAACGAGGCATAAGCGCTGGTTGGCATCTTCTACGACTTCTT
TGAATGtatcatttttgcaatttctaaaaagttcacTGTTCTACAGTCGA
GTAATTTTGTTCCATCTTCAGGTTTTTCGAGCGAAAGAGAGGCTAGACAT
GgaattcaaaaatgaaaatgaaagcacGAATACTCAACCGAATGAAGAAG
GAAAAAGCTGATAAGTTTTTTTGctaagaatctttttttaataatttttt
ttggaagcaAGATGACCTTTATTGTACAGAAGATATTGGacatatttaat
ttttatattGGAAAGAAATCTCGTGAATTTATGTTACATTTTCAAGCTTA
TCACCTTATTTTGTCTAACTAGCTATCATAACGATGGGTTTCCATCACAT
TTTgacaaagatataaaaaaatagaataCAAAAATTTAAGTTCTAAGACG
ATGTCATTTTGGG

Coding sequence (CDS) from alignment at scaffold_205:278561..279973+

>TCONS_00051821 ID=TCONS_00051821|Name=TCONS_00051821|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_205:278561..279973+ (Clytia hemisphaerica)
TTAGCTGGAGCTCGACAAACTGCCAGAGCTTCTACTGAAGGTACAAAGAA
AGCAGCCTCCAACAATGCAGCGACTGGCATCTCACTTGATGAAGCCAAAC
AAATTCTGAATATCAAGGAGTTGAATCCAGAGGAAGTACAAAAGAGTTAT
GATTACTTGTTCAAAATCAACGATAAAAAGGCTGGAGGATCATTCTACCT
GCAGTCGAAGGTTTTTCGAGCGAAAGAGAGGCTAGACATGgaattcaaaa
atgaaaatgaaagcacGAATACTCAACCGAATGAAGAAGGAAAAAGCTGA
TTAGCTGGAGCTCGACAAACTGCCAGAGCTTCTACTGAAGGTACAAAGAA
AGCAGCCTCCAACAATGCAGCGACTGGCATCTCACTTGATGAAGCCAAAC
AAATTCTGAATATCAAGGAGTTGAATCCAGAGGAAGTACAAAAGAGTTAT
GATTACTTGTTCAAAATCAACGATAAAAAGGCTGGAGGATCATTCTACCT
GCAGTCGAAGGTTTTTCGAGCGAAAGAGAGGCTAGACATGgaattcaaaa
atgaaaatgaaagcacGAATACTCAACCGAATGAAGAAGGAAAAAGCTGA
TTAGCTGGAGCTCGACAAACTGCCAGAGCTTCTACTGAAGGTACAAAGAA
AGCAGCCTCCAACAATGCAGCGACTGGCATCTCACTTGATGAAGCCAAAC
AAATTCTGAATATCAAGGAGTTGAATCCAGAGGAAGTACAAAAGAGTTAT
GATTACTTGTTCAAAATCAACGATAAAAAGGCTGGAGGATCATTCTACCT
GCAGTCGAAGGTTTTTCGAGCGAAAGAGAGGCTAGACATGgaattcaaaa
atgaaaatgaaagcacGAATACTCAACCGAATGAAGAAGGAAAAAGCTGA
TTAGCTGGAGCTCGACAAACTGCCAGAGCTTCTACTGAAGGTACAAAGAA
AGCAGCCTCCAACAATGCAGCGACTGGCATCTCACTTGATGAAGCCAAAC
AAATTCTGAATATCAAGGAGTTGAATCCAGAGGAAGTACAAAAGAGTTAT
GATTACTTGTTCAAAATCAACGATAAAAAGGCTGGAGGATCATTCTACCT
GCAGTCGAAGGTTTTTCGAGCGAAAGAGAGGCTAGACATGgaattcaaaa
atgaaaatgaaagcacGAATACTCAACCGAATGAAGAAGGAAAAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032805XLOC_032805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051821-exon-scaffold_205-1491911889:278561..278651TCONS_00051821-exon-scaffold_205-1491911889:278561..278651Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1510915933:278561..278651TCONS_00051821-exon-scaffold_205-1510915933:278561..278651Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1575043694:278561..278651TCONS_00051821-exon-scaffold_205-1575043694:278561..278651Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1491911889:278885..278938TCONS_00051821-exon-scaffold_205-1491911889:278885..278938Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1510915933:278885..278938TCONS_00051821-exon-scaffold_205-1510915933:278885..278938Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1575043694:278885..278938TCONS_00051821-exon-scaffold_205-1575043694:278885..278938Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1491911889:279236..279301TCONS_00051821-exon-scaffold_205-1491911889:279236..279301Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1510915933:279236..279301TCONS_00051821-exon-scaffold_205-1510915933:279236..279301Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1575043694:279236..279301TCONS_00051821-exon-scaffold_205-1575043694:279236..279301Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1491911889:279632..279973TCONS_00051821-exon-scaffold_205-1491911889:279632..279973Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1510915933:279632..279973TCONS_00051821-exon-scaffold_205-1510915933:279632..279973Clytia hemisphaericaexon
TCONS_00051821-exon-scaffold_205-1575043694:279632..279973TCONS_00051821-exon-scaffold_205-1575043694:279632..279973Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051821-proteinTCONS_00051821-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:278561..279973 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
160.681	157.293	68.3119	50.7242	66.7587	50.4456	55.159	49.9013	41.2814	33.9097	42.213	30.5653	30.0426	27.638	29.9253	28.8465	39.7947	39.5186	29.3815	28.2218	40.2848	40.7095	73.1969	67.4067	39.0874	42.494	40.4449	31.8447	50.8245	49.5662
Blast
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BLAST of TCONS_00051821 vs. Swiss-Prot (Human)
Match: TIM16 (Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 7.367e-26
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:   41 GTKKAASNNAATGISLDEAKQILNIKELNPEEVQKSYDYLFKINDKKAGGSFYLQSKVFRAKERLDMEFK 250
            G + AA++N  +G+SL EA+QILN+ +L+PEEVQK+Y++LFK+NDK  GGSFYLQSKV RAKERLD E K
Sbjct:   42 GHRSAAASNL-SGLSLQEAQQILNVSKLSPEEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELK 110
The following BLAST results are available for this feature:
BLAST of TCONS_00051821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM167.367e-2665.71Mitochondrial import inner membrane translocase su... [more]
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