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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052543 ID=TCONS_00052543|Name=TCONS_00052543|organism=Clytia hemisphaerica|type=transcript|length=1502bp AATAGTTCTGGATCATGAGTATCAGTAAAAACGTAGAAACATTGAAGATT TTAGATATAACTTTATACGTCTTTCCGCNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTCTCCTTT AATTAAAATAACCTCTCCAACGCGCAACTTTACATCATTATCCGTATTCT TTCTATAAATGTTATTTTGCCTCAATTCTTGAAggtaaactttttcaaat ctaTTTTGGAAATGTGACAGAATGATTTTTATGTGTCTCATTCTCTTTGT ACAGTCGTCATTATTgtctaaaaacaaaacttcaGCATTACCGTGTTGCT TGTGAAAGATATTCTTCCCAAAAATTAAATGGTTTGGTGTGATAGTCTCG TCGATGTCATCTTCGTTTACGTAACATAGTGGTCTGCTGTTAATAAACGC CTCAATCTGACATAAGATCGTCTGCAATTCTTCTAGTGTTACTAGGGATT TAcctaatgttttctttaaagatattttcacGCTGCGCACAAGACGCTCG TACATTCCACCCCACCAGGGGGAAGAAGGTAAAATAAATTGTTGTTCAAT GTCCTGTTGgctgaaaaaaagtttaacttctttcgatttgaaagttttga aattgtCGTGAATAACCACACAAGGTACACCTCGGCGTgacgaaaatctt ttaaaagcaCGAATGAAAGCAGAATTTTTCATGTCTGGACAGACCTCTAG ATGGATAGCACGAGTTCCGGCACATGTTAGGAGTAGAATGTAGACCTTCT GAGTCTCTTTCTTATCTTCACTTTATACATACAAGGGTCCAGCGTAGTCC AATCCTGTGGCATTGAAAGCATTAAAACTTAAACGAAAATCTGGCAAGTC AGGACTAGCTGGTGGTGATATTGTCTTTCCTTGATAACGTTTGCATAAGG TACACTTATATAGTAAATTTTTGACTGTCTTCCTTCCTCTGACAATCCAA TAATTAGTTCGTAAATGGGCCAGTGTTGATTCCACGCCGTGATGGAATAC TTTCTCGTGTGTCTCCTTTATAAGTTGTTCCGTAAATACACTGTCTGTTC TGAGTATGAGTGGATGCTTTTCTTGGTATTGTAATGTTGAATTTCCGAAT CGTCCGCGTAGCCGTAAAAGTCCTTTCTGATCTTCAAACAAGTTTAACga tgatttcaatttttggtaGTCCTCTTGTCCCTTCAGTTGATGTTGTTCGT TTGCAATAATCAGTTCCATGGTGTCTTTTCGTTCTTCAGTTGAAAGAGTG TCCAATGATAATGGTTttcctttcttcttcttcctcaaATTCTCAATAAA TCGTCTGACGTAGCTTAGTATACTTATAAGCTTCTCGAGTGAGCCGAAAC GTTCGTACTCAATGATGGCGTGTAAGTTGGTAGCAGGTATTTTCGTCATT GTCAAAGTCGTTGTCACGTTATTGTCAGTTTCCGTTAAGTCGATACTCTC TT Run BLAST on NCBI protein sequence of TCONS_00052543-protein >TCONS_00052543-protein ID=TCONS_00052543-protein|Name=TCONS_00052543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MKNSAFIRAFKRFSSRRGVPCVVIHDNFKTFKSKEVKLFFSQQDIEQQFI LPSSPWWGGMYERLVRSVKISLKKTLGKSLVTLEELQTILCQIEAFINSR PLCYVNEDDIDETITPNHLIFGKNIFHKQHGNAEVLFLDNNDDCTKRMRH IKIILSHFQNRFEKVYLQELRQNNIYRKNTDNDVKLRVGEVILIKGEKXX XXXXXXXXXXXXXXXXXXAERRIKLYLKSSMFLRFY Run BLAST on NCBI transcript from alignment at scaffold_217:134980..136481 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052543 ID=TCONS_00052543|Name=TCONS_00052543|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at scaffold_217:134980..136481 (Clytia hemisphaerica) AAGAGAGTATCGACTTAACGGAAACTGACAATAACGTGACAACGACTTTG
ACAATGACGAAAATACCTGCTACCAACTTACACGCCATCATTGAGTACGA
ACGTTTCGGCTCACTCGAGAAGCTTATAAGTATACTAAGCTACGTCAGAC
GATTTATTGAGAATttgaggaagaagaagaaaggaaAACCATTATCATTG
GACACTCTTTCAACTGAAGAACGAAAAGACACCATGGAACTGATTATTGC
AAACGAACAACATCAACTGAAGGGACAAGAGGACtaccaaaaattgaaat
catcGTTAAACTTGTTTGAAGATCAGAAAGGACTTTTACGGCTACGCGGA
CGATTCGGAAATTCAACATTACAATACCAAGAAAAGCATCCACTCATACT
CAGAACAGACAGTGTATTTACGGAACAACTTATAAAGGAGACACACGAGA
AAGTATTCCATCACGGCGTGGAATCAACACTGGCCCATTTACGAACTAAT
TATTGGATTGTCAGAGGAAGGAAGACAGTCAAAAATTTACTATATAAGTG
TACCTTATGCAAACGTTATCAAGGAAAGACAATATCACCACCAGCTAGTC
CTGACTTGCCAGATTTTCGTTTAAGTTTTAATGCTTTCAATGCCACAGGA
TTGGACTACGCTGGACCCTTGTATGTATAAAGTGAAGATAAGAAAGAGAC
TCAGAAGGTCTACATTCTACTCCTAACATGTGCCGGAACTCGTGCTATCC
ATCTAGAGGTCTGTCCAGACATGAAAAATTCTGCTTTCATTCGtgctttt
aaaagattttcgtcACGCCGAGGTGTACCTTGTGTGGTTATTCACGacaa
tttcaaaactttcaaatcgaaagaagttaaactttttttcagcCAACAGG
ACATTGAACAACAATTTATTTTACCTTCTTCCCCCTGGTGGGGTGGAATG
TACGAGCGTCTTGTGCGCAGCgtgaaaatatctttaaagaaaacattagg
TAAATCCCTAGTAACACTAGAAGAATTGCAGACGATCTTATGTCAGATTG
AGGCGTTTATTAACAGCAGACCACTATGTTACGTAAACGAAGATGACATC
GACGAGACTATCACACCAAACCATTTAATTTTTGGGAAGAATATCTTTCA
CAAGCAACACGGTAATGCtgaagttttgtttttagacAATAATGACGACT
GTACAAAGAGAATGAGACACATAAAAATCATTCTGTCACATTTCCAAAAt
agatttgaaaaagtttaccTTCAAGAATTGAGGCAAAATAACATTTATAG
AAAGAATACGGATAATGATGTAAAGTTGCGCGTTGGAGAGGTTATTTTAA
TTAAAGGAGAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGCGGAAAGACGTATAAAGTTATATCT
AAAATCTTCAATGTTTCTACGTTTTTACTGATACTCATGATCCAGAACTA
TT Coding sequence (CDS) from alignment at scaffold_217:134980..136481 >TCONS_00052543 ID=TCONS_00052543|Name=TCONS_00052543|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_217:134980..136481 (Clytia hemisphaerica) ATGAAAAATTCTGCTTTCATTCGtgcttttaaaagattttcgtcACGCCG AGGTGTACCTTGTGTGGTTATTCACGacaatttcaaaactttcaaatcga aagaagttaaactttttttcagcCAACAGGACATTGAACAACAATTTATT TTACCTTCTTCCCCCTGGTGGGGTGGAATGTACGAGCGTCTTGTGCGCAG CgtgaaaatatctttaaagaaaacattaggTAAATCCCTAGTAACACTAG AAGAATTGCAGACGATCTTATGTCAGATTGAGGCGTTTATTAACAGCAGA CCACTATGTTACGTAAACGAAGATGACATCGACGAGACTATCACACCAAA CCATTTAATTTTTGGGAAGAATATCTTTCACAAGCAACACGGTAATGCtg aagttttgtttttagacAATAATGACGACTGTACAAAGAGAATGAGACAC ATAAAAATCATTCTGTCACATTTCCAAAAtagatttgaaaaagtttaccT TCAAGAATTGAGGCAAAATAACATTTATAGAAAGAATACGGATAATGATG TAAAGTTGCGCGTTGGAGAGGTTATTTTAATTAAAGGAGAAAAGATNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNGCGGAAAGACGTATAAAGTTATATCTAAAATCTTCAATGTTTCTAC GTTTTTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052543-exon-scaffold_217-1491911889:134980..136481 | TCONS_00052543-exon-scaffold_217-1491911889:134980..136481 | Clytia hemisphaerica | exon |
TCONS_00052543-exon-scaffold_217-1510915933:134980..136481 | TCONS_00052543-exon-scaffold_217-1510915933:134980..136481 | Clytia hemisphaerica | exon |
TCONS_00052543-exon-scaffold_217-1575043694:134980..136481 | TCONS_00052543-exon-scaffold_217-1575043694:134980..136481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_217 | supercontig | scaffold_217:134980..136481 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
Term | Definition |
GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0015074 |
DNA integration |
molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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