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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052543 ID=TCONS_00052543|Name=TCONS_00052543|organism=Clytia hemisphaerica|type=transcript|length=1502bp
AATAGTTCTGGATCATGAGTATCAGTAAAAACGTAGAAACATTGAAGATT
TTAGATATAACTTTATACGTCTTTCCGCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTTCTCCTTT
AATTAAAATAACCTCTCCAACGCGCAACTTTACATCATTATCCGTATTCT
TTCTATAAATGTTATTTTGCCTCAATTCTTGAAggtaaactttttcaaat
ctaTTTTGGAAATGTGACAGAATGATTTTTATGTGTCTCATTCTCTTTGT
ACAGTCGTCATTATTgtctaaaaacaaaacttcaGCATTACCGTGTTGCT
TGTGAAAGATATTCTTCCCAAAAATTAAATGGTTTGGTGTGATAGTCTCG
TCGATGTCATCTTCGTTTACGTAACATAGTGGTCTGCTGTTAATAAACGC
CTCAATCTGACATAAGATCGTCTGCAATTCTTCTAGTGTTACTAGGGATT
TAcctaatgttttctttaaagatattttcacGCTGCGCACAAGACGCTCG
TACATTCCACCCCACCAGGGGGAAGAAGGTAAAATAAATTGTTGTTCAAT
GTCCTGTTGgctgaaaaaaagtttaacttctttcgatttgaaagttttga
aattgtCGTGAATAACCACACAAGGTACACCTCGGCGTgacgaaaatctt
ttaaaagcaCGAATGAAAGCAGAATTTTTCATGTCTGGACAGACCTCTAG
ATGGATAGCACGAGTTCCGGCACATGTTAGGAGTAGAATGTAGACCTTCT
GAGTCTCTTTCTTATCTTCACTTTATACATACAAGGGTCCAGCGTAGTCC
AATCCTGTGGCATTGAAAGCATTAAAACTTAAACGAAAATCTGGCAAGTC
AGGACTAGCTGGTGGTGATATTGTCTTTCCTTGATAACGTTTGCATAAGG
TACACTTATATAGTAAATTTTTGACTGTCTTCCTTCCTCTGACAATCCAA
TAATTAGTTCGTAAATGGGCCAGTGTTGATTCCACGCCGTGATGGAATAC
TTTCTCGTGTGTCTCCTTTATAAGTTGTTCCGTAAATACACTGTCTGTTC
TGAGTATGAGTGGATGCTTTTCTTGGTATTGTAATGTTGAATTTCCGAAT
CGTCCGCGTAGCCGTAAAAGTCCTTTCTGATCTTCAAACAAGTTTAACga
tgatttcaatttttggtaGTCCTCTTGTCCCTTCAGTTGATGTTGTTCGT
TTGCAATAATCAGTTCCATGGTGTCTTTTCGTTCTTCAGTTGAAAGAGTG
TCCAATGATAATGGTTttcctttcttcttcttcctcaaATTCTCAATAAA
TCGTCTGACGTAGCTTAGTATACTTATAAGCTTCTCGAGTGAGCCGAAAC
GTTCGTACTCAATGATGGCGTGTAAGTTGGTAGCAGGTATTTTCGTCATT
GTCAAAGTCGTTGTCACGTTATTGTCAGTTTCCGTTAAGTCGATACTCTC
TT Run BLAST on NCBI protein sequence of TCONS_00052543-protein >TCONS_00052543-protein ID=TCONS_00052543-protein|Name=TCONS_00052543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MKNSAFIRAFKRFSSRRGVPCVVIHDNFKTFKSKEVKLFFSQQDIEQQFI
LPSSPWWGGMYERLVRSVKISLKKTLGKSLVTLEELQTILCQIEAFINSR
PLCYVNEDDIDETITPNHLIFGKNIFHKQHGNAEVLFLDNNDDCTKRMRH
IKIILSHFQNRFEKVYLQELRQNNIYRKNTDNDVKLRVGEVILIKGEKXX
XXXXXXXXXXXXXXXXXXAERRIKLYLKSSMFLRFY Run BLAST on NCBI transcript from alignment at scaffold_217:134980..136481 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052543 ID=TCONS_00052543|Name=TCONS_00052543|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at scaffold_217:134980..136481 (Clytia hemisphaerica)
AAGAGAGTATCGACTTAACGGAAACTGACAATAACGTGACAACGACTTTG
ACAATGACGAAAATACCTGCTACCAACTTACACGCCATCATTGAGTACGA
ACGTTTCGGCTCACTCGAGAAGCTTATAAGTATACTAAGCTACGTCAGAC
GATTTATTGAGAATttgaggaagaagaagaaaggaaAACCATTATCATTG
GACACTCTTTCAACTGAAGAACGAAAAGACACCATGGAACTGATTATTGC
AAACGAACAACATCAACTGAAGGGACAAGAGGACtaccaaaaattgaaat
catcGTTAAACTTGTTTGAAGATCAGAAAGGACTTTTACGGCTACGCGGA
CGATTCGGAAATTCAACATTACAATACCAAGAAAAGCATCCACTCATACT
CAGAACAGACAGTGTATTTACGGAACAACTTATAAAGGAGACACACGAGA
AAGTATTCCATCACGGCGTGGAATCAACACTGGCCCATTTACGAACTAAT
TATTGGATTGTCAGAGGAAGGAAGACAGTCAAAAATTTACTATATAAGTG
TACCTTATGCAAACGTTATCAAGGAAAGACAATATCACCACCAGCTAGTC
CTGACTTGCCAGATTTTCGTTTAAGTTTTAATGCTTTCAATGCCACAGGA
TTGGACTACGCTGGACCCTTGTATGTATAAAGTGAAGATAAGAAAGAGAC
TCAGAAGGTCTACATTCTACTCCTAACATGTGCCGGAACTCGTGCTATCC
ATCTAGAGGTCTGTCCAGACATGAAAAATTCTGCTTTCATTCGtgctttt
aaaagattttcgtcACGCCGAGGTGTACCTTGTGTGGTTATTCACGacaa
tttcaaaactttcaaatcgaaagaagttaaactttttttcagcCAACAGG
ACATTGAACAACAATTTATTTTACCTTCTTCCCCCTGGTGGGGTGGAATG
TACGAGCGTCTTGTGCGCAGCgtgaaaatatctttaaagaaaacattagg
TAAATCCCTAGTAACACTAGAAGAATTGCAGACGATCTTATGTCAGATTG
AGGCGTTTATTAACAGCAGACCACTATGTTACGTAAACGAAGATGACATC
GACGAGACTATCACACCAAACCATTTAATTTTTGGGAAGAATATCTTTCA
CAAGCAACACGGTAATGCtgaagttttgtttttagacAATAATGACGACT
GTACAAAGAGAATGAGACACATAAAAATCATTCTGTCACATTTCCAAAAt
agatttgaaaaagtttaccTTCAAGAATTGAGGCAAAATAACATTTATAG
AAAGAATACGGATAATGATGTAAAGTTGCGCGTTGGAGAGGTTATTTTAA
TTAAAGGAGAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGCGGAAAGACGTATAAAGTTATATCT
AAAATCTTCAATGTTTCTACGTTTTTACTGATACTCATGATCCAGAACTA
TT Coding sequence (CDS) from alignment at scaffold_217:134980..136481 >TCONS_00052543 ID=TCONS_00052543|Name=TCONS_00052543|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_217:134980..136481 (Clytia hemisphaerica)
ATGAAAAATTCTGCTTTCATTCGtgcttttaaaagattttcgtcACGCCG
AGGTGTACCTTGTGTGGTTATTCACGacaatttcaaaactttcaaatcga
aagaagttaaactttttttcagcCAACAGGACATTGAACAACAATTTATT
TTACCTTCTTCCCCCTGGTGGGGTGGAATGTACGAGCGTCTTGTGCGCAG
CgtgaaaatatctttaaagaaaacattaggTAAATCCCTAGTAACACTAG
AAGAATTGCAGACGATCTTATGTCAGATTGAGGCGTTTATTAACAGCAGA
CCACTATGTTACGTAAACGAAGATGACATCGACGAGACTATCACACCAAA
CCATTTAATTTTTGGGAAGAATATCTTTCACAAGCAACACGGTAATGCtg
aagttttgtttttagacAATAATGACGACTGTACAAAGAGAATGAGACAC
ATAAAAATCATTCTGTCACATTTCCAAAAtagatttgaaaaagtttaccT
TCAAGAATTGAGGCAAAATAACATTTATAGAAAGAATACGGATAATGATG
TAAAGTTGCGCGTTGGAGAGGTTATTTTAATTAAAGGAGAAAAGATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCGGAAAGACGTATAAAGTTATATCTAAAATCTTCAATGTTTCTAC
GTTTTTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052543-exon-scaffold_217-1491911889:134980..136481 | TCONS_00052543-exon-scaffold_217-1491911889:134980..136481 | Clytia hemisphaerica | exon |
| TCONS_00052543-exon-scaffold_217-1510915933:134980..136481 | TCONS_00052543-exon-scaffold_217-1510915933:134980..136481 | Clytia hemisphaerica | exon |
| TCONS_00052543-exon-scaffold_217-1575043694:134980..136481 | TCONS_00052543-exon-scaffold_217-1575043694:134980..136481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:134980..136481 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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