TCONS_00052554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052554
Unique NameTCONS_00052554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052554 ID=TCONS_00052554|Name=TCONS_00052554|organism=Clytia hemisphaerica|type=transcript|length=1694bp
gaatgctgGAACTTTTGATTTATCTGATATAGTttcgaaattttgttttg
ttttgttaatttgtttcagagaatcaaaaagCACTGTATTAATCTGTGGT
TTTAATTTTGTCCAACAATGACAAAGCTATCTAAATCTAAAAGAATGAAG
AATCAAACAAAACTGAACAATAAGCAATCAACAATTGTAATTTTGATTAC
CAATAAATAAATTCCTGCTTTCTAGAGTCAACAATaaataatcagaaaat
tgtTAAAAGTAACTTAATGGTTGAACATGGTATTTTATGATGGCATCAGC
GAataggaaaaaccacttcaagATAGTTCTTCTTGGAGAAGGATGTGTTG
GAAAAACCAGTTTAGTTTTACGATATTGTCAAGATAAATTTAATGATAAA
CATTTGACAACACTACAGGCATCATTTTTAAATCGAAAAATCAATGTTGA
TAACAAAAGAGTAAATCTCGCAATTTGGGACACAGCAGGGCAAGAAAGGT
TTCATGCACTTGGTCCAATATATTACAGAGACAGCCATGGGGCAATTTTA
GTTTTCGATATAACAGATGAAGATTCTTTCCAAAAGGTCAAAAATTGGGT
CAAAGAGCTGAAGAAAATGCTTGGTGATGATATATGCCTTTGTATAGCAG
GcaataaaattgatttggaGAAAGATAGGAACGTTCAAAACAGTGATGCT
GAAGAATACGCACGATCGGTCGGCGCAAAACTATACCATACATCAGCCAA
ATTAAACAAGGGGATTGATGAACTTTTCCTCGATTTATCAAAAAGGATGT
TAGCGAAACAAGAGGAGGACGAAGCACAAATGGCGTCTAATCCCAACTCA
TCGAAATCAAGGGATGCTTCACAACGTAAGCGAAATGTTGTCATCGTTGA
TGAAGATGAGGCGAACAAACCTGCCAAATCAGGGTGCTGTTGATCTTCAC
TGGTACATAAGCCGGCGGTTGTGTGGTATTGTGGTTGTCTTAGGGAGAAC
AATTGCCCAAATCCTCGGTGTCGCCGTATCCAGCCCTCACACACTCTACA
TTCTTCGAACATATTGGGTTTTGATCTTCTGGTCTTTGCTGGGTgactta
ttgatatttttgtcgTTCGATATTGTGGATATATTTACACTCCGGTAGAA
ATGGATTGGATCATGTAAATTGACTGAAGATTGACGACTTCTTGACATTT
CAAATGacattgtttgaaaatttttgcaaattcaatttttaacttatttt
tgattttggttttggtttttgttatatattcagtttctttttctttatgt
TTGTAggtatttttttgaattctgtTCTGGTTTCTCTTGATATTAAGAAT
GCTCAGTACAGACATTATTATTCCACACATACACAATATGAAATATCTCC
CAACCTATCCAAAGAAGGTGAAAGGAAGGATATATCCATAGACTTTTACA
CTTGTCTGTTCAAATCTTCGTGCAATCTTACAATTTTTGTATACCAATTT
GTAGCTGTTTCAATTGTTTAGTTGATTTTGTTTAAATTATGaatgtcaaa
acaaaaatgttttttttgtaaatcaaAACTATTATTTTTAATGATCATAC
GATTGCCAACagtatcaaattttttctttattgctcGCGAACCTTCTCTA
AAGTTTCTTAATAATACTGAAGGATTCcttgtttttccattttt
Run BLAST on NCBI

protein sequence of TCONS_00052554-protein

>TCONS_00052554-protein ID=TCONS_00052554-protein|Name=TCONS_00052554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MMASANRKNHFKIVLLGEGCVGKTSLVLRYCQDKFNDKHLTTLQASFLNR
KINVDNKRVNLAIWDTAGQERFHALGPIYYRDSHGAILVFDITDEDSFQK
VKNWVKELKKMLGDDICLCIAGNKIDLEKDRNVQNSDAEEYARSVGAKLY
HTSAKLNKGIDELFLDLSKRMLAKQEEDEAQMASNPNSSKSRDASQRKRN
VVIVDEDEANKPAKSGCC
Run BLAST on NCBI

transcript from alignment at scaffold_218:111360..115732+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052554 ID=TCONS_00052554|Name=TCONS_00052554|organism=Clytia hemisphaerica|type=transcript|length=4373bp|location=Sequence derived from alignment at scaffold_218:111360..115732+ (Clytia hemisphaerica)
gaatgctgGAACTTTTGATTTATCTGATATAGTttcgaaattttgttttg
ttttgttaatttgtttcagagaatcaaaaagCACTGTATTAATCTGTGGT
TTTAATTTTGTCCAACAATGACAAAGCTATCTAAATCTAAAAGAATGAAG
AATCAAACAAAACTGAACAATAAGCAATCAACAATTGTAATTTTGATTAC
CAATAAATAAATTCCTGCTTTCTAGAGTCAACAATaaataatcagaaaat
tgtTAAAAGTAACTTAATGGTTGAACATGGTATTTTATGATGGCATCAGC
GAataggaaaaaccacttcaagATAGTTCTTCTTGGAGAAGGATGTGTTG
GAAAAACCAGTTTAGTTTTACGATATTGTCAAGATAAATTTAATGATAAA
CATTTGACAACACTACAGGTATGCTTGATTACATAAATTTTTACGAAATG
TAATTTCGCCTTTTGTGACTTCGCCTTTTTTGTGATAATAAAACTAAGCG
AGCTAACCACTAAAGTAATAATTTAAAGTCTAATCAAATCATTTCCTTAA
ATCTTGTTGGCATCAAgcactatcagaaaaatttaatttcttttcagTTT
CCTTGAATCTTGTTGGCATCAAGcactatcaaaaaaatttaatttctttt
cagTTTCTTAAAAGATTTGATGGGTTAGGTGACAATTGGGAATAaaagat
aaattttcttttcttccgTAGGCATCATTTTTAAATCGAAAAATCAATGT
TGATAACAAAAGAGTAAATCTCGCAATTTGGGTAAGTTAACTCGTTAGCC
AACATTTTCTTCCGTAGATAAAGTTCATtctttgtattcatcattgcACA
GAATTTCCTTTGAGCGTACATAGATTACTTCATACTTTGCGTTCAGGTGA
TGCCATGAATTTCTGGTCTTCTGGTCTTCTGGTCTTCTGGTCTGCAAGAG
CTAGTCTTTGTTTGCGTACATTGTTTGAGATGAGCTGGAATTTCATCTTA
TGAGCTTACGTTGGATATTCAAGCATTTGGTGGAACCTAAAACACAACTT
TTAGTGTCTTTGTATACctataataacaataataataataataataataa
taactaaTATTTTAAGTGGCTGTCCATGGAATAACGACTAAGCTTTTAGG
CAGCTCAGCCATTGTCTTCCCCAGGGGCACCTGTAATAAATAAGTATGAA
TTCATTCGCTTTTGAAATAAACCTCCCAACCAAAGCTTTAAGCAAAaggt
tttattgttttattttacttATAGGACACAGCAGGGCAAGAAAGGTTTCA
TGCACTTGGTCCAATATATTACAGAGACAGGTATTTTCTTATCATTACTT
GTTAGAAAATACACATTTTGTTTGtcaattcttcattttttcttattGAA
GAATTATTCCtctttttgcatattttttgcTTTCACTCgatttcacgttc
ttttttcaGCCATGGGGCAATTTTAGTTTTCGATATAACAGATGAAGATT
CTTTCCAAAAGGTAAGCAGAAGCATTTCTTAAAAACCCATTAAACTGATT
GACAATCCTGAATTCTCTTGTTTTAACTACGCACGCCACAATTAAGAGTA
TTTCAATACCTTTGATGTCAAGTCTAAATATTGATTTTGCTTGATGTTAG
TGGTACTAGCAGTACAAGTTTTATAAATTTAGCATTTTGATTCTCagaat
attattttgatgcAACAAAAGAATGCCGTGTACAAATTGCTGTAATGTAA
AAATACTGTTTTTTCCTACAGGTCAAAAATTGGGTCAAAGAGCTGAAGAA
AATGCTTGGTGATGATATATGCCTTTGTATAGCAGGTAATGACAAAAGTG
CCTATtggctttaaccctattcatactaggcttttaggggcagTTCAGAA
AGAGGGGCGTTTTCCTgaaccaccccttaacttttgatctagttggtgTT
TTTGGTTGagatttggcacacaagatccttgtcatttgagataacttttg
acaaaaatattttttgatgacgtcactcttCATTCCAAAGTGAGCATAAA
CCCAAAATTTTCTTTGCTCTTATAAGTaactattgtattctaacaaaagc
tttccTGTGCTCAAAATGCTTACTtcatcctaaatattcaatgaaTTATG
GCTTGAacgacataaaaaataaatttgtactgaaaatgtcaatttttatg
acaccttactgtcaccatgctcaaaaatgtcaaaaattatttcattgtaa
aagctaaataaaagttaggaatttacagaaaaatttcatgtcaacgTTTT
TAGATTGGTCAAAATATAGTTTTAACATGAAATTTCTTTTGGGTGCTTCA
TTTACCTTTGTCAATCACCTCCAAAATTGTTCTCACTTTCAGGcaataaa
attgatttggaGAAAGATAGGAACGTTCAAAACAGTGATGCTGAAGAGTA
AGAAAACTATTCTTTTGGATTCCATTATTTGTCTTTCTATTGGCTGGTTG
GCTTTgaatcatatttttcaaaaaggaacTTTGAAATTAATCTCATTCAG
GTATTCTCGCATTCCTTACTGTACTCTTGCCCGTCATTAAATTTACGTTC
GACTTTCCAATGCTAAATTGGTACACTATTTCGTTTTCGTTAGATACGCA
CGATCGGTCGGCGCAAAACTATACCATACATCAGCCAAATTAAACAAGGG
GATTGATGAACTTTTCCTCGATTTATCAAAAAGTAtgtattgttttgaaa
atactAATTTTGTGGTGTAATTAGAACTGTAAGAACTTTCCGATAATTAG
AGACTTAGGGCCCGTACAATCTTTTATGCGACACAACCAAACCTGGTCCA
TatcaaattatgaaatatttaaagAGTTTCGTGTAGAGGGTTTTTTTTGC
TAAtgccttgaaaaaatttttggacccGAAAACTGACGTCACATTtgacg
aaatttcaaagtaatttttttaaacccAAAACCGCTTATACCAATCGACA
GCTCTCAAAAAACGATAAAGAGGACTTTTAAGTGGATATTGATATCGAGT
CGATTTCTCGAGAAAATTAACGTAAAAATTCCGTTTTGATGTCATTTCTG
GTCGATTTACTCGAGTCGCGTCGGGAAATCAACTACTGTATGTCCACTTA
AAAGTCCTCTATGTCGTTTTGATAGCTTTCGATTGATATAAGTggttttt
gaaatttcgtcaaattttAGGGGTCAAGGGGTTTTGCTTGTGACGTTAGT
TTTTGGGTCCTAAAAGATTTTCCTAggccttataaaaaaaaaaccctCGC
GAAAAACTCTTTGAATACTTCTAACGACTAACTTGTTTTTCCTTTACCTT
CTTGACTTTGCAAAAGGCAAAACACCAGGGCTCATATTTCGTCAAACTGA
CCCAAGCTGAAATAATTCAACTCTGAATCTTATGTTCGAAGTTTTTACAA
CAAATTCTTCCTCGTTTTTCCAGGGATGTTAGCGAAACAAGAGGAGGACG
AAGCACAAATGGCGTCTAATCCCAACTCATCGAAATCAAGGGATGCTTCA
CAACGTAAGCGAAATGTTGTCATCGTTGATGAAGATGAGGCGAACAAACC
TGCCAAATCAGGGTGCTGTTGATCTTCACTGGTACATAAGCCGGCGGTTG
TGTGGTATTGTGGTTGTCTTAGGGAGAACAATTGCCCAAATCCTCGGTGT
CGCCGTATCCAGCCCTCACACACTCTACATTCTTCGAACATATTGGGTTT
TGATCTTCTGGTCTTTGCTGGGTgacttattgatatttttgtcgTTCGAT
ATTGTGGATATATTTACACTCCGGTAGAAATGGATTGGATCATGTAAATT
GACTGAAGATTGACGACTTCTTGACATTTCAAATGacattgtttgaaaat
ttttgcaaattcaatttttaacttatttttgattttggttttggtttttg
ttatatattcagtttctttttctttatgtTTGTAggtatttttttgaatt
ctgtTCTGGTTTCTCTTGATATTAAGAATGCTCAGTACAGACATTATTAT
TCCACACATACACAATATGAAATATCTCCCAACCTATCCAAAGAAGGTGA
AAGGAAGGATATATCCATAGACTTTTACACTTGTCTGTTCAAATCTTCGT
GCAATCTTACAATTTTTGTATACCAATTTGTAGCTGTTTCAATTGTTTAG
TTGATTTTGTTTAAATTATGaatgtcaaaacaaaaatgttttttttgtaa
atcaaAACTATTATTTTTAATGATCATACGATTGCCAACagtatcaaatt
ttttctttattgctcGCGAACCTTCTCTAAAGTTTCTTAATAATACTGAA
GGATTCcttgtttttccattttt

Coding sequence (CDS) from alignment at scaffold_218:111360..115732+

>TCONS_00052554 ID=TCONS_00052554|Name=TCONS_00052554|organism=Clytia hemisphaerica|type=CDS|length=5256bp|location=Sequence derived from alignment at scaffold_218:111360..115732+ (Clytia hemisphaerica)
ATGATGGCATCAGCGAataggaaaaaccacttcaagATAGTTCTTCTTGG
AGAAGGATGTGTTGGAAAAACCAGTTTAGTTTTACGATATTGTCAAGATA
AATTTAATGATAAACATTTGACAACACTACAGGCATCATTTTTAAATCGA
AAAATCAATGTTGATAACAAAAGAGTAAATCTCGCAATTTGGGACACAGC
AGGGCAAGAAAGGTTTCATGCACTTGGTCCAATATATTACAGAGACAGCC
ATGGGGCAATTTTAGTTTTCGATATAACAGATGAAGATTCTTTCCAAAAG
GTCAAAAATTGGGTCAAAGAGCTGAAGAAAATGCTTGGTGATGATATATG
CCTTTGTATAGCAGGcaataaaattgatttggaGAAAGATAGGAACGTTC
AAAACAGTGATGCTGAAGAATACGCACGATCGGTCGGCGCAAAACTATAC
CATACATCAGCCAAATTAAACAAGGGGATTGATGAACTTTTCCTCGATTT
ATCAAAAAGGATGTTAGCGAAACAAGAGGAGGACGAAGCACAAATGGCGT
CTAATCCCAACTCATCGAAATCAAGGGATGCTTCACAACGTAAGCGAAAT
GTTGTCATCGTTGATGAAGATGAGGCGAACAAACCTGCCAAATCAGGGTG
CTGTTGAATGATGGCATCAGCGAataggaaaaaccacttcaagATAGTTC
TTCTTGGAGAAGGATGTGTTGGAAAAACCAGTTTAGTTTTACGATATTGT
CAAGATAAATTTAATGATAAACATTTGACAACACTACAGGCATCATTTTT
AAATCGAAAAATCAATGTTGATAACAAAAGAGTAAATCTCGCAATTTGGG
ACACAGCAGGGCAAGAAAGGTTTCATGCACTTGGTCCAATATATTACAGA
GACAGCCATGGGGCAATTTTAGTTTTCGATATAACAGATGAAGATTCTTT
CCAAAAGGTCAAAAATTGGGTCAAAGAGCTGAAGAAAATGCTTGGTGATG
ATATATGCCTTTGTATAGCAGGcaataaaattgatttggaGAAAGATAGG
AACGTTCAAAACAGTGATGCTGAAGAATACGCACGATCGGTCGGCGCAAA
ACTATACCATACATCAGCCAAATTAAACAAGGGGATTGATGAACTTTTCC
TCGATTTATCAAAAAGGATGTTAGCGAAACAAGAGGAGGACGAAGCACAA
ATGGCGTCTAATCCCAACTCATCGAAATCAAGGGATGCTTCACAACGTAA
GCGAAATGTTGTCATCGTTGATGAAGATGAGGCGAACAAACCTGCCAAAT
CAGGGTGCTGTTGAATGATGGCATCAGCGAataggaaaaaccacttcaag
ATAGTTCTTCTTGGAGAAGGATGTGTTGGAAAAACCAGTTTAGTTTTACG
ATATTGTCAAGATAAATTTAATGATAAACATTTGACAACACTACAGGCAT
CATTTTTAAATCGAAAAATCAATGTTGATAACAAAAGAGTAAATCTCGCA
ATTTGGGACACAGCAGGGCAAGAAAGGTTTCATGCACTTGGTCCAATATA
TTACAGAGACAGCCATGGGGCAATTTTAGTTTTCGATATAACAGATGAAG
ATTCTTTCCAAAAGGTCAAAAATTGGGTCAAAGAGCTGAAGAAAATGCTT
GGTGATGATATATGCCTTTGTATAGCAGGcaataaaattgatttggaGAA
AGATAGGAACGTTCAAAACAGTGATGCTGAAGAATACGCACGATCGGTCG
GCGCAAAACTATACCATACATCAGCCAAATTAAACAAGGGGATTGATGAA
CTTTTCCTCGATTTATCAAAAAGGATGTTAGCGAAACAAGAGGAGGACGA
AGCACAAATGGCGTCTAATCCCAACTCATCGAAATCAAGGGATGCTTCAC
AACGTAAGCGAAATGTTGTCATCGTTGATGAAGATGAGGCGAACAAACCT
GCCAAATCAGGGTGCTGTTGAATGATGGCATCAGCGAataggaaaaacca
cttcaagATAGTTCTTCTTGGAGAAGGATGTGTTGGAAAAACCAGTTTAG
TTTTACGATATTGTCAAGATAAATTTAATGATAAACATTTGACAACACTA
CAGGCATCATTTTTAAATCGAAAAATCAATGTTGATAACAAAAGAGTAAA
TCTCGCAATTTGGGACACAGCAGGGCAAGAAAGGTTTCATGCACTTGGTC
CAATATATTACAGAGACAGCCATGGGGCAATTTTAGTTTTCGATATAACA
GATGAAGATTCTTTCCAAAAGGTCAAAAATTGGGTCAAAGAGCTGAAGAA
AATGCTTGGTGATGATATATGCCTTTGTATAGCAGGcaataaaattgatt
tggaGAAAGATAGGAACGTTCAAAACAGTGATGCTGAAGAATACGCACGA
TCGGTCGGCGCAAAACTATACCATACATCAGCCAAATTAAACAAGGGGAT
TGATGAACTTTTCCTCGATTTATCAAAAAGGATGTTAGCGAAACAAGAGG
AGGACGAAGCACAAATGGCGTCTAATCCCAACTCATCGAAATCAAGGGAT
GCTTCACAACGTAAGCGAAATGTTGTCATCGTTGATGAAGATGAGGCGAA
CAAACCTGCCAAATCAGGGTGCTGTTGAATGATGGCATCAGCGAatagga
aaaaccacttcaagATAGTTCTTCTTGGAGAAGGATGTGTTGGAAAAACC
AGTTTAGTTTTACGATATTGTCAAGATAAATTTAATGATAAACATTTGAC
AACACTACAGGCATCATTTTTAAATCGAAAAATCAATGTTGATAACAAAA
GAGTAAATCTCGCAATTTGGGACACAGCAGGGCAAGAAAGGTTTCATGCA
CTTGGTCCAATATATTACAGAGACAGCCATGGGGCAATTTTAGTTTTCGA
TATAACAGATGAAGATTCTTTCCAAAAGGTCAAAAATTGGGTCAAAGAGC
TGAAGAAAATGCTTGGTGATGATATATGCCTTTGTATAGCAGGcaataaa
attgatttggaGAAAGATAGGAACGTTCAAAACAGTGATGCTGAAGAATA
CGCACGATCGGTCGGCGCAAAACTATACCATACATCAGCCAAATTAAACA
AGGGGATTGATGAACTTTTCCTCGATTTATCAAAAAGGATGTTAGCGAAA
CAAGAGGAGGACGAAGCACAAATGGCGTCTAATCCCAACTCATCGAAATC
AAGGGATGCTTCACAACGTAAGCGAAATGTTGTCATCGTTGATGAAGATG
AGGCGAACAAACCTGCCAAATCAGGGTGCTGTTGAATGATGGCATCAGCG
AataggaaaaaccacttcaagATAGTTCTTCTTGGAGAAGGATGTGTTGG
AAAAACCAGTTTAGTTTTACGATATTGTCAAGATAAATTTAATGATAAAC
ATTTGACAACACTACAGGCATCATTTTTAAATCGAAAAATCAATGTTGAT
AACAAAAGAGTAAATCTCGCAATTTGGGACACAGCAGGGCAAGAAAGGTT
TCATGCACTTGGTCCAATATATTACAGAGACAGCCATGGGGCAATTTTAG
TTTTCGATATAACAGATGAAGATTCTTTCCAAAAGGTCAAAAATTGGGTC
AAAGAGCTGAAGAAAATGCTTGGTGATGATATATGCCTTTGTATAGCAGG
caataaaattgatttggaGAAAGATAGGAACGTTCAAAACAGTGATGCTG
AAGAATACGCACGATCGGTCGGCGCAAAACTATACCATACATCAGCCAAA
TTAAACAAGGGGATTGATGAACTTTTCCTCGATTTATCAAAAAGGATGTT
AGCGAAACAAGAGGAGGACGAAGCACAAATGGCGTCTAATCCCAACTCAT
CGAAATCAAGGGATGCTTCACAACGTAAGCGAAATGTTGTCATCGTTGAT
GAAGATGAGGCGAACAAACCTGCCAAATCAGGGTGCTGTTGAATGATGGC
ATCAGCGAataggaaaaaccacttcaagATAGTTCTTCTTGGAGAAGGAT
GTGTTGGAAAAACCAGTTTAGTTTTACGATATTGTCAAGATAAATTTAAT
GATAAACATTTGACAACACTACAGGCATCATTTTTAAATCGAAAAATCAA
TGTTGATAACAAAAGAGTAAATCTCGCAATTTGGGACACAGCAGGGCAAG
AAAGGTTTCATGCACTTGGTCCAATATATTACAGAGACAGCCATGGGGCA
ATTTTAGTTTTCGATATAACAGATGAAGATTCTTTCCAAAAGGTCAAAAA
TTGGGTCAAAGAGCTGAAGAAAATGCTTGGTGATGATATATGCCTTTGTA
TAGCAGGcaataaaattgatttggaGAAAGATAGGAACGTTCAAAACAGT
GATGCTGAAGAATACGCACGATCGGTCGGCGCAAAACTATACCATACATC
AGCCAAATTAAACAAGGGGATTGATGAACTTTTCCTCGATTTATCAAAAA
GGATGTTAGCGAAACAAGAGGAGGACGAAGCACAAATGGCGTCTAATCCC
AACTCATCGAAATCAAGGGATGCTTCACAACGTAAGCGAAATGTTGTCAT
CGTTGATGAAGATGAGGCGAACAAACCTGCCAAATCAGGGTGCTGTTGAA
TGATGGCATCAGCGAataggaaaaaccacttcaagATAGTTCTTCTTGGA
GAAGGATGTGTTGGAAAAACCAGTTTAGTTTTACGATATTGTCAAGATAA
ATTTAATGATAAACATTTGACAACACTACAGGCATCATTTTTAAATCGAA
AAATCAATGTTGATAACAAAAGAGTAAATCTCGCAATTTGGGACACAGCA
GGGCAAGAAAGGTTTCATGCACTTGGTCCAATATATTACAGAGACAGCCA
TGGGGCAATTTTAGTTTTCGATATAACAGATGAAGATTCTTTCCAAAAGG
TCAAAAATTGGGTCAAAGAGCTGAAGAAAATGCTTGGTGATGATATATGC
CTTTGTATAGCAGGcaataaaattgatttggaGAAAGATAGGAACGTTCA
AAACAGTGATGCTGAAGAATACGCACGATCGGTCGGCGCAAAACTATACC
ATACATCAGCCAAATTAAACAAGGGGATTGATGAACTTTTCCTCGATTTA
TCAAAAAGGATGTTAGCGAAACAAGAGGAGGACGAAGCACAAATGGCGTC
TAATCCCAACTCATCGAAATCAAGGGATGCTTCACAACGTAAGCGAAATG
TTGTCATCGTTGATGAAGATGAGGCGAACAAACCTGCCAAATCAGGGTGC
TGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033235XLOC_033235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052554-exon-scaffold_218-1491911889:111360..111777TCONS_00052554-exon-scaffold_218-1491911889:111360..111777Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:111360..111777TCONS_00052554-exon-scaffold_218-1510915933:111360..111777Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:111360..111777TCONS_00052554-exon-scaffold_218-1575043694:111360..111777Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:112081..112140TCONS_00052554-exon-scaffold_218-1491911889:112081..112140Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:112081..112140TCONS_00052554-exon-scaffold_218-1510915933:112081..112140Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:112081..112140TCONS_00052554-exon-scaffold_218-1575043694:112081..112140Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:112634..112689TCONS_00052554-exon-scaffold_218-1491911889:112634..112689Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:112634..112689TCONS_00052554-exon-scaffold_218-1510915933:112634..112689Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:112634..112689TCONS_00052554-exon-scaffold_218-1575043694:112634..112689Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:112819..112870TCONS_00052554-exon-scaffold_218-1491911889:112819..112870Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:112819..112870TCONS_00052554-exon-scaffold_218-1510915933:112819..112870Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:112819..112870TCONS_00052554-exon-scaffold_218-1575043694:112819..112870Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:113131..113194TCONS_00052554-exon-scaffold_218-1491911889:113131..113194Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:113131..113194TCONS_00052554-exon-scaffold_218-1510915933:113131..113194Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:113131..113194TCONS_00052554-exon-scaffold_218-1575043694:113131..113194Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:113752..113806TCONS_00052554-exon-scaffold_218-1491911889:113752..113806Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:113752..113806TCONS_00052554-exon-scaffold_218-1510915933:113752..113806Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:113752..113806TCONS_00052554-exon-scaffold_218-1575043694:113752..113806Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:114003..114091TCONS_00052554-exon-scaffold_218-1491911889:114003..114091Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:114003..114091TCONS_00052554-exon-scaffold_218-1510915933:114003..114091Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:114003..114091TCONS_00052554-exon-scaffold_218-1575043694:114003..114091Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1491911889:114833..115732TCONS_00052554-exon-scaffold_218-1491911889:114833..115732Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1510915933:114833..115732TCONS_00052554-exon-scaffold_218-1510915933:114833..115732Clytia hemisphaericaexon
TCONS_00052554-exon-scaffold_218-1575043694:114833..115732TCONS_00052554-exon-scaffold_218-1575043694:114833..115732Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052554-proteinTCONS_00052554-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:111360..115732 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
171.918	169.534	188.297	193.112	26.2899	19.7308	61.7992	66.281	79.905	74.6117	67.7726	55.2433	53.8001	52.5717	50.8452	54.8704	61.7133	57.9967	41.8024	58.6255	57.909	56.2441	79.6304	75.7327	53.3272	61.5805	90.8078	71.9152	88.4867	87.0741
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00052554 vs. Swiss-Prot (Human)
Match: RAB21 (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 4.285e-99
Identity = 144/212 (67.92%), Postives = 170/212 (80.19%), Query Frame = 2 
Query:  305 RKNHFKIVLLGEGCVGKTSLVLRYCQDKFNDKHLTTLQASFLNRKINVDNKRVNLAIWDTAGQERFHALGPIYYRDSHGAILVFDITDEDSFQKVKNWVKELKKMLGDDICLCIAGNKIDLEKDRNVQNSDAEEYARSVGAKLYHTSAKLNKGIDELFLDLSKRMLAKQEEDEAQMASNPNSSKSRDASQRKRNVVIVDEDEANKPAKSGCC 940
            R   FK+VLLGEGCVGKTSLVLRYC++KFNDKH+TTLQASFL +K+N+  KRVNLAIWDTAGQERFHALGPIYYRDS+GAILV+DITDEDSFQKVKNWVKEL+KMLG++ICLCI GNKIDLEK+R+V   +AE YA SVGAK YHTSAK NKGI+ELFLDL KRM+     + AQ+      + S      +R V I+D++   + +  GCC
Sbjct:   16 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI-----ETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCC 222
The following BLAST results are available for this feature:
BLAST of TCONS_00052554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB214.285e-9967.92Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
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