TCONS_00052695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052695
Unique NameTCONS_00052695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052695 ID=TCONS_00052695|Name=TCONS_00052695|organism=Clytia hemisphaerica|type=transcript|length=297bp
AAGTGTTGCCATTAGTGAGTCCCATCTCCAAAATGATTTCATTATTATTC
TCGGATGCCCATGTCAAGTTATGGATTCTTTCATTTCCATACCAAAAATT
GCCAGCAGTAGATCCAAAGCCTTCTTTATAGGCGGTCCAATTTCGTGCAA
AACTCACTGATCCATCCACTCTTTGTTGTATGGTAGTCCAACCACCACCA
AGTAGTGTCATGTCGCATAAGATTGATGAAATTTCACCATTTGCACCTTC
GATAGTATACACACCACTCCTTCCCCAACCAGCCTCTTGGATCCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_218:241718..242014

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052695 ID=TCONS_00052695|Name=TCONS_00052695|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at scaffold_218:241718..242014 (Clytia hemisphaerica)
AAGGGATCCAAGAGGCTGGTTGGGGAAGGAGTGGTGTGTATACTATCGAA
GGTGCAAATGGTGAAATTTCATCAATCTTATGCGACATGACACTACTTGG
TGGTGGTTGGACTACCATACAACAAAGAGTGGATGGATCAGTGAGTTTTG
CACGAAATTGGACCGCCTATAAAGAAGGCTTTGGATCTACTGCTGGCAAT
TTTTGGTATGGAAATGAAAGAATCCATAACTTGACATGGGCATCCGAGAA
TAATAATGAAATCATTTTGGAGATGGGACTCACTAATGGCAACACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033299XLOC_033299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052695-exon-scaffold_218-1491911889:241718..242014TCONS_00052695-exon-scaffold_218-1491911889:241718..242014Clytia hemisphaericaexon
TCONS_00052695-exon-scaffold_218-1510915933:241718..242014TCONS_00052695-exon-scaffold_218-1510915933:241718..242014Clytia hemisphaericaexon
TCONS_00052695-exon-scaffold_218-1575043694:241718..242014TCONS_00052695-exon-scaffold_218-1575043694:241718..242014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:241718..242014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	4.55592	2.22863	0	0	0	0	0	0	0	0	6.69021	2.50123	0	0	0	0.309605	20.9591	27.7509	0.778082	0.569282	0.922715	2.93609	3.45612	3.0845	0	0	0	0
Blast
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BLAST of TCONS_00052695 vs. Swiss-Prot (Human)
Match: ANGP4 (Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.531e-20
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -3 
Query:   62 IQEAGWGRSGVYTIEGANG-EISSILCDMTLLGGGWTTIQQRVDGSVSFARNWTAYKEGFGSTAGNFWYGNERIHNLT 292
            IQ +G   SGVYTI+ +N  +   + CD+   GG WT IQ+R +G+V+F RNW  YK+GFG  AG  W GNE +H LT
Sbjct:  294 IQRSGASASGVYTIQVSNATKPRKVFCDLQSSGGRWTLIQRRENGTVNFQRNWKDYKQGFGDPAGEHWLGNEVVHQLT 371
The following BLAST results are available for this feature:
BLAST of TCONS_00052695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP44.531e-2050.00Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1[more]
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