TCONS_00053046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053046
Unique NameTCONS_00053046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053046 ID=TCONS_00053046|Name=TCONS_00053046|organism=Clytia hemisphaerica|type=transcript|length=1218bp
NNTTTGAAGCTTACGTTCGGATTCTAATACATCTGACTTGTCCTCTGGAT
GACGATTAAGCTTTGAAACTTGTTGATTGTAGACTTTCAGTGCCCTAGAA
CGGTTGGGCACCAAACGAGTGATGGGATCTTGGATGAATGGAAGTGTTGC
GATCGTCACTTGCTCGTCGGATTTTACGATGATTGATTTATTAATGAGTT
CTTGTTCAACCTCTTCACGAATGCTTGTTGCCTCTATTGATCCATTGGAC
TTACAATCGACACAAGAACGACATTTGGTGCAACGATAGGTAACTTTACT
GCCGGCACTTTCAGCAATGTCGAACGTTGATTGTTGGCCAGGATACGAGT
TGTTGGAGACTTGGTAGGTGCGAGTTGTGCACAGAAGTGGAACGTCTGGG
TTGAGTTGATAACCAGTTTGATAAAGTCTGAATTGTTTAGAAATAAAATC
ACTCTTACCAGTCCTGTGAAATTCATTGTTGATCATGGTGAACAATTGAT
GAGGACCACCAATAACTCCACGACTGCCACATGAGCTGCGAAATATGGAT
TGGTAAATTGTTAATCCTGAAGGCATCTGGAACACGAACTTTGGGAAATA
ACGGAGATATCTGATTCCAATCATTAAATCGACGTTTCCTCCAATGGTAG
GTGGTAGTTTCGGAAGTTGCGATGGATCACCTCCAACTTTCTTGTAGGCT
TCGTGGACATCATGCTCGACTTGGCCGTTCAAATGGTAGGTTGGAAATGT
TGAGGTGATTTTGTCCAGTGATATTCCAACAAATGTTGCATCAGATCCGT
NAAATAACGGAGGTATCTGATTCCAATCATTAAATCGACGTCTCCTCCAA
TGGTAGGTGGTAGCTTTGGAAGTTGCGATGGATCACCTCCAATTTTCTTG
TAGGCTTCGTGGACGTCATGCTCGACTTGGCCGTTCAAATGGTAGGTTGG
GAATGTTGAGGTGATTTGTAGTGATATTCCAACAAATGTTGCATCAGATC
CGTCATGGGTTGGGATCTTGACTGAATAAACGTTTGTTCGTATTGGAGTT
GTAACACCTCCGACTCCACCCAAGTTGATAGGAATTTGGCACTGCAATTC
GGCATCCAATGATTTGACTGATGACGTACGAACGATGAAATCGTCACATC
CAGAATCGTAGAAAATCAGATACGGTTTATGGTTGATGGTGACTTCTTGA
AACTGGAAGATGGCTGNN
Run BLAST on NCBI

protein sequence of TCONS_00053046-protein

>TCONS_00053046-protein ID=TCONS_00053046-protein|Name=TCONS_00053046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MIGIRYLRYFPKFVFQMPSGLTIYQSIFRSSCGSRGVIGGPHQLFTMINN
EFHRTGKSDFISKQFRLYQTGYQLNPDVPLLCTTRTYQVSNNSYPGQQST
FDIAESAGSKVTYRCTKCRSCVDCKSNGSIEATSIREEVEQELINKSIIV
KSDEQVTIATLPFIQDPITRLVPNRSRALKVYNQQVSKLNRHPEDKSDVL
ESERKLQX
Run BLAST on NCBI

transcript from alignment at scaffold_224:124635..125852

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053046 ID=TCONS_00053046|Name=TCONS_00053046|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at scaffold_224:124635..125852 (Clytia hemisphaerica)
NNCAGCCATCTTCCAGTTTCAAGAAGTCACCATCAACCATAAACCGTATC TGATTTTCTACGATTCTGGATGTGACGATTTCATCGTTCGTACGTCATCA GTCAAATCATTGGATGCCGAATTGCAGTGCCAAATTCCTATCAACTTGGG TGGAGTCGGAGGTGTTACAACTCCAATACGAACAAACGTTTATTCAGTCA AGATCCCAACCCATGACGGATCTGATGCAACATTTGTTGGAATATCACTA CAAATCACCTCAACATTCCCAACCTACCATTTGAACGGCCAAGTCGAGCA TGACGTCCACGAAGCCTACAAGAAAATTGGAGGTGATCCATCGCAACTTC CAAAGCTACCACCTACCATTGGAGGAGACGTCGATTTAATGATTGGAATC AGATACCTCCGTTATTTNACGGATCTGATGCAACATTTGTTGGAATATCA CTGGACAAAATCACCTCAACATTTCCAACCTACCATTTGAACGGCCAAGT CGAGCATGATGTCCACGAAGCCTACAAGAAAGTTGGAGGTGATCCATCGC AACTTCCGAAACTACCACCTACCATTGGAGGAAACGTCGATTTAATGATT GGAATCAGATATCTCCGTTATTTCCCAAAGTTCGTGTTCCAGATGCCTTC AGGATTAACAATTTACCAATCCATATTTCGCAGCTCATGTGGCAGTCGTG GAGTTATTGGTGGTCCTCATCAATTGTTCACCATGATCAACAATGAATTT CACAGGACTGGTAAGAGTGATTTTATTTCTAAACAATTCAGACTTTATCA AACTGGTTATCAACTCAACCCAGACGTTCCACTTCTGTGCACAACTCGCA CCTACCAAGTCTCCAACAACTCGTATCCTGGCCAACAATCAACGTTCGAC ATTGCTGAAAGTGCCGGCAGTAAAGTTACCTATCGTTGCACCAAATGTCG TTCTTGTGTCGATTGTAAGTCCAATGGATCAATAGAGGCAACAAGCATTC GTGAAGAGGTTGAACAAGAACTCATTAATAAATCAATCATCGTAAAATCC GACGAGCAAGTGACGATCGCAACACTTCCATTCATCCAAGATCCCATCAC TCGTTTGGTGCCCAACCGTTCTAGGGCACTGAAAGTCTACAATCAACAAG TTTCAAAGCTTAATCGTCATCCAGAGGACAAGTCAGATGTATTAGAATCC GAACGTAAGCTTCAAANN

Coding sequence (CDS) from alignment at scaffold_224:124635..125852

>TCONS_00053046 ID=TCONS_00053046|Name=TCONS_00053046|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_224:124635..125852 (Clytia hemisphaerica)
ATGATTGGAATCAGATATCTCCGTTATTTCCCAAAGTTCGTGTTCCAGAT
GCCTTCAGGATTAACAATTTACCAATCCATATTTCGCAGCTCATGTGGCA
GTCGTGGAGTTATTGGTGGTCCTCATCAATTGTTCACCATGATCAACAAT
GAATTTCACAGGACTGGTAAGAGTGATTTTATTTCTAAACAATTCAGACT
TTATCAAACTGGTTATCAACTCAACCCAGACGTTCCACTTCTGTGCACAA
CTCGCACCTACCAAGTCTCCAACAACTCGTATCCTGGCCAACAATCAACG
TTCGACATTGCTGAAAGTGCCGGCAGTAAAGTTACCTATCGTTGCACCAA
ATGTCGTTCTTGTGTCGATTGTAAGTCCAATGGATCAATAGAGGCAACAA
GCATTCGTGAAGAGGTTGAACAAGAACTCATTAATAAATCAATCATCGTA
AAATCCGACGAGCAAGTGACGATCGCAACACTTCCATTCATCCAAGATCC
CATCACTCGTTTGGTGCCCAACCGTTCTAGGGCACTGAAAGTCTACAATC
AACAAGTTTCAAAGCTTAATCGTCATCCAGAGGACAAGTCAGATGTATTA
GAATCCGAACGTAAGCTTCAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033504XLOC_033504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053046-exon-scaffold_224-1491911889:124635..125852TCONS_00053046-exon-scaffold_224-1491911889:124635..125852Clytia hemisphaericaexon
TCONS_00053046-exon-scaffold_224-1510915933:124635..125852TCONS_00053046-exon-scaffold_224-1510915933:124635..125852Clytia hemisphaericaexon
TCONS_00053046-exon-scaffold_224-1575043694:124635..125852TCONS_00053046-exon-scaffold_224-1575043694:124635..125852Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053046-proteinTCONS_00053046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:124635..125852 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14336 1.54901 1.13756 0.421437 1.96389 2.1748 2.92832 3.99256 2.96724 3.49354 2.90666 4.05295 2.60397 3.51453 0.32574 0.0535127 0.131977 0.234211 1.03901 3.52435 0.250122 0.138919 0.282207 0.139515 2.1866 4.99343 0.158271 0.203019 0.125922 0.663961
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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