|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053046 ID=TCONS_00053046|Name=TCONS_00053046|organism=Clytia hemisphaerica|type=transcript|length=1218bp
NNTTTGAAGCTTACGTTCGGATTCTAATACATCTGACTTGTCCTCTGGAT
GACGATTAAGCTTTGAAACTTGTTGATTGTAGACTTTCAGTGCCCTAGAA
CGGTTGGGCACCAAACGAGTGATGGGATCTTGGATGAATGGAAGTGTTGC
GATCGTCACTTGCTCGTCGGATTTTACGATGATTGATTTATTAATGAGTT
CTTGTTCAACCTCTTCACGAATGCTTGTTGCCTCTATTGATCCATTGGAC
TTACAATCGACACAAGAACGACATTTGGTGCAACGATAGGTAACTTTACT
GCCGGCACTTTCAGCAATGTCGAACGTTGATTGTTGGCCAGGATACGAGT
TGTTGGAGACTTGGTAGGTGCGAGTTGTGCACAGAAGTGGAACGTCTGGG
TTGAGTTGATAACCAGTTTGATAAAGTCTGAATTGTTTAGAAATAAAATC
ACTCTTACCAGTCCTGTGAAATTCATTGTTGATCATGGTGAACAATTGAT
GAGGACCACCAATAACTCCACGACTGCCACATGAGCTGCGAAATATGGAT
TGGTAAATTGTTAATCCTGAAGGCATCTGGAACACGAACTTTGGGAAATA
ACGGAGATATCTGATTCCAATCATTAAATCGACGTTTCCTCCAATGGTAG
GTGGTAGTTTCGGAAGTTGCGATGGATCACCTCCAACTTTCTTGTAGGCT
TCGTGGACATCATGCTCGACTTGGCCGTTCAAATGGTAGGTTGGAAATGT
TGAGGTGATTTTGTCCAGTGATATTCCAACAAATGTTGCATCAGATCCGT
NAAATAACGGAGGTATCTGATTCCAATCATTAAATCGACGTCTCCTCCAA
TGGTAGGTGGTAGCTTTGGAAGTTGCGATGGATCACCTCCAATTTTCTTG
TAGGCTTCGTGGACGTCATGCTCGACTTGGCCGTTCAAATGGTAGGTTGG
GAATGTTGAGGTGATTTGTAGTGATATTCCAACAAATGTTGCATCAGATC
CGTCATGGGTTGGGATCTTGACTGAATAAACGTTTGTTCGTATTGGAGTT
GTAACACCTCCGACTCCACCCAAGTTGATAGGAATTTGGCACTGCAATTC
GGCATCCAATGATTTGACTGATGACGTACGAACGATGAAATCGTCACATC
CAGAATCGTAGAAAATCAGATACGGTTTATGGTTGATGGTGACTTCTTGA
AACTGGAAGATGGCTGNN Run BLAST on NCBI protein sequence of TCONS_00053046-protein >TCONS_00053046-protein ID=TCONS_00053046-protein|Name=TCONS_00053046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MIGIRYLRYFPKFVFQMPSGLTIYQSIFRSSCGSRGVIGGPHQLFTMINN
EFHRTGKSDFISKQFRLYQTGYQLNPDVPLLCTTRTYQVSNNSYPGQQST
FDIAESAGSKVTYRCTKCRSCVDCKSNGSIEATSIREEVEQELINKSIIV
KSDEQVTIATLPFIQDPITRLVPNRSRALKVYNQQVSKLNRHPEDKSDVL
ESERKLQX Run BLAST on NCBI transcript from alignment at scaffold_224:124635..125852 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053046 ID=TCONS_00053046|Name=TCONS_00053046|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at scaffold_224:124635..125852 (Clytia hemisphaerica)
NNCAGCCATCTTCCAGTTTCAAGAAGTCACCATCAACCATAAACCGTATC
TGATTTTCTACGATTCTGGATGTGACGATTTCATCGTTCGTACGTCATCA
GTCAAATCATTGGATGCCGAATTGCAGTGCCAAATTCCTATCAACTTGGG
TGGAGTCGGAGGTGTTACAACTCCAATACGAACAAACGTTTATTCAGTCA
AGATCCCAACCCATGACGGATCTGATGCAACATTTGTTGGAATATCACTA
CAAATCACCTCAACATTCCCAACCTACCATTTGAACGGCCAAGTCGAGCA
TGACGTCCACGAAGCCTACAAGAAAATTGGAGGTGATCCATCGCAACTTC
CAAAGCTACCACCTACCATTGGAGGAGACGTCGATTTAATGATTGGAATC
AGATACCTCCGTTATTTNACGGATCTGATGCAACATTTGTTGGAATATCA
CTGGACAAAATCACCTCAACATTTCCAACCTACCATTTGAACGGCCAAGT
CGAGCATGATGTCCACGAAGCCTACAAGAAAGTTGGAGGTGATCCATCGC
AACTTCCGAAACTACCACCTACCATTGGAGGAAACGTCGATTTAATGATT
GGAATCAGATATCTCCGTTATTTCCCAAAGTTCGTGTTCCAGATGCCTTC
AGGATTAACAATTTACCAATCCATATTTCGCAGCTCATGTGGCAGTCGTG
GAGTTATTGGTGGTCCTCATCAATTGTTCACCATGATCAACAATGAATTT
CACAGGACTGGTAAGAGTGATTTTATTTCTAAACAATTCAGACTTTATCA
AACTGGTTATCAACTCAACCCAGACGTTCCACTTCTGTGCACAACTCGCA
CCTACCAAGTCTCCAACAACTCGTATCCTGGCCAACAATCAACGTTCGAC
ATTGCTGAAAGTGCCGGCAGTAAAGTTACCTATCGTTGCACCAAATGTCG
TTCTTGTGTCGATTGTAAGTCCAATGGATCAATAGAGGCAACAAGCATTC
GTGAAGAGGTTGAACAAGAACTCATTAATAAATCAATCATCGTAAAATCC
GACGAGCAAGTGACGATCGCAACACTTCCATTCATCCAAGATCCCATCAC
TCGTTTGGTGCCCAACCGTTCTAGGGCACTGAAAGTCTACAATCAACAAG
TTTCAAAGCTTAATCGTCATCCAGAGGACAAGTCAGATGTATTAGAATCC
GAACGTAAGCTTCAAANN Coding sequence (CDS) from alignment at scaffold_224:124635..125852 >TCONS_00053046 ID=TCONS_00053046|Name=TCONS_00053046|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_224:124635..125852 (Clytia hemisphaerica)
ATGATTGGAATCAGATATCTCCGTTATTTCCCAAAGTTCGTGTTCCAGAT
GCCTTCAGGATTAACAATTTACCAATCCATATTTCGCAGCTCATGTGGCA
GTCGTGGAGTTATTGGTGGTCCTCATCAATTGTTCACCATGATCAACAAT
GAATTTCACAGGACTGGTAAGAGTGATTTTATTTCTAAACAATTCAGACT
TTATCAAACTGGTTATCAACTCAACCCAGACGTTCCACTTCTGTGCACAA
CTCGCACCTACCAAGTCTCCAACAACTCGTATCCTGGCCAACAATCAACG
TTCGACATTGCTGAAAGTGCCGGCAGTAAAGTTACCTATCGTTGCACCAA
ATGTCGTTCTTGTGTCGATTGTAAGTCCAATGGATCAATAGAGGCAACAA
GCATTCGTGAAGAGGTTGAACAAGAACTCATTAATAAATCAATCATCGTA
AAATCCGACGAGCAAGTGACGATCGCAACACTTCCATTCATCCAAGATCC
CATCACTCGTTTGGTGCCCAACCGTTCTAGGGCACTGAAAGTCTACAATC
AACAAGTTTCAAAGCTTAATCGTCATCCAGAGGACAAGTCAGATGTATTA
GAATCCGAACGTAAGCTTCAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053046-exon-scaffold_224-1491911889:124635..125852 | TCONS_00053046-exon-scaffold_224-1491911889:124635..125852 | Clytia hemisphaerica | exon |
| TCONS_00053046-exon-scaffold_224-1510915933:124635..125852 | TCONS_00053046-exon-scaffold_224-1510915933:124635..125852 | Clytia hemisphaerica | exon |
| TCONS_00053046-exon-scaffold_224-1575043694:124635..125852 | TCONS_00053046-exon-scaffold_224-1575043694:124635..125852 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_224 | supercontig | scaffold_224:124635..125852 . |
Blast
The following BLAST results are available for this feature:
|
