TCONS_00053061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053061
Unique NameTCONS_00053061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053061 ID=TCONS_00053061|Name=TCONS_00053061|organism=Clytia hemisphaerica|type=transcript|length=1008bp
CTAAGATGTGATGattttgaaaagtcaaaaattgcATTTGCTTTTTAACT
TTGCAGATCTCCTCTACTTATGGCTCAtcttttgatataattttggaTTG
AGgtttgaaaaatatgattgctgaaaaaaccaaaacaattgATCCACTAG
AGCCATTTCTCTTATTGGGGAAGAATGTTCGAGGAGCTGCTGCTTCACAA
CTAGTGCAACAAGTAACTGAAGCCCCTAATGTATTTGTTTTTGGAGAACT
ACTCCAACTTGATGGTATTAAGGAGTtggaaaacaatgaaacacattcAC
AATATTGGAGGCTCCTACAATTGTATGCATTTGGTGTTTACAAGgagttt
caagaaaaaaaagaaagtcttCCAGAATTGAATGATGCTCAAATAAGAAA
GCTACGTCTTTTGACACTAGCTACACTAGCCTCAAAATCAAAGTTTGTCT
ACTATGACAGTTTGAAAAGTAGCTTAGGACTTGATAATTTGAGACAGTTG
GAAGACTTGATTATTGAAGCGATATATGCAGATATCTTACAAGGGAAAAT
CAACCAAAAGGAGAAGCGTTTGGAAGTTGATTTTGTGGTTGGTCGAGATA
TAAAGCCAGAGATGATTGAAACCATCATTGATACTCTTCAAAACTGGTCA
GCAAAATGTGAAGCTGCAATGGTAAATCTGGACGTACAAAGCAGTCGtgc
aaatgtaaacaaagaatCTAAAGCCCAACACCGTAAAGATATCGAAAATA
ATATTGAGAGTATGAAGAAGATACATCGGGCACAGGATATGCAACAAGTT
CTGGAACCAGAATCCAGTGGTTCTCCAGTAGCTAGAAATCAGAAGATGAA
AGCATCTTCAAAGACTATAATGAAATCTGCAGTGAAACCATCAACGTCAA
GAACGAAATAATTTCACAACATTCACTCTAGAAACATTTCTTATTGTTTA
TAATTTGTATTTATTTGCAACAGCTTTCTTACAAGATCGAGAAGAATCTT
TCCATGAC
Run BLAST on NCBI

protein sequence of TCONS_00053061-protein

>TCONS_00053061-protein ID=TCONS_00053061-protein|Name=TCONS_00053061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MIAEKTKTIDPLEPFLLLGKNVRGAAASQLVQQVTEAPNVFVFGELLQLD
GIKELENNETHSQYWRLLQLYAFGVYKEFQEKKESLPELNDAQIRKLRLL
TLATLASKSKFVYYDSLKSSLGLDNLRQLEDLIIEAIYADILQGKINQKE
KRLEVDFVVGRDIKPEMIETIIDTLQNWSAKCEAAMVNLDVQSSRANVNK
ESKAQHRKDIENNIESMKKIHRAQDMQQVLEPESSGSPVARNQKMKASSK
TIMKSAVKPSTSRTK
Run BLAST on NCBI

transcript from alignment at scaffold_225:83144..93909-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053061 ID=TCONS_00053061|Name=TCONS_00053061|organism=Clytia hemisphaerica|type=transcript|length=10766bp|location=Sequence derived from alignment at scaffold_225:83144..93909- (Clytia hemisphaerica)
CTAAGATGTGATGATTTTGAAAAGTCAAAAATTGCATTTGCTTTTTAACT
TTGCAGATCTCCTCTACTTATGGCTCATCTTTTGATATAATTTTGGATTG
AGGTATATATTAATTAAATAGACCTTTGCTAGATGCGATGCAATTTGGAC
TACAGTACTTAGCGGTGAAAACATTAGGTCTGAATCACTATGACTATCCC
GCCACGTCCAAATTTACAATTTATAGAGCTAAAACTCAGATCTGAGTTTT
TTGGTGTTTTTTTTTGAGTTGAGAAGAGTGACTCACACGTCTGATCTGCT
GCATACACTATTGTCTTTTTGTATGAGATTCCCATTTCCACACTAAAATT
CCTTTGCCACTTTTCTAGCGGAAAAAGACACCAGGACTGTGTGTCTGGGT
AGTAGATTTAAAAAAAAACTTTAGAAAGTTGATGAGGCGATGGGAATTTG
ATGTTCTGTTTACCGTCGACCGCCCGCATGCTCTTGAGCCGCCGCTCAAA
AAAGTTCATTATTTCTTCTTAAAAACTCATTATTTTCTTCTTTTCCTGTG
CCTAGCTATCCAAAACAGTTCAAAGTTAGGGTGGACAGGCCAAAATTTTC
CCCTCAATTTTTAGAAACCAAATTAATTTTATTTGAAAGTCCTTACCTTT
GTGAGAAAAATGAGGGGTCATTTATTAGAATTGGTTAAGTATTCCCAAAG
TTATTCCATTTTCAAAACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC
TCGATGACTGTTAAACTTTAGCTTATCGCTAATGATCTGGAAATGATAGC
TAAAAACAAATTTCACCACTAGAATGCTGAAATCCTCAGCTTTCAGATGG
TGTATGGTGCTTAAATGAAAAAATCCGCAATCTTGTTAAAAAATTGCAAT
TTCTTCTTATTTTTTGAAATTCCAGACGGCCTGTACTGTAGATTTTCAAA
GAAAGCACTTTGTGATAGATTGTAGCCTAATCATACCCTGGGTTCACTAA
AAAAACCGCGATTGAAAAGATGAACCAGCTCAATAGCGACAGCCATTTTT
TTCAATGTGGGTCGAGAATTTTCCGGTGCCGTGGTCAGCGCTAAATCGCG
TTTTCACCTTGACGTCGAAAAACATGAATATCTTTGGAAAGAAAATAGAT
ACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACGGTGGAATTCAACTTCGTTGGAGATTGGAA
GCACCAGGTAGGAATAATGAATAATGAATAATGAAATTTTGCCGCATCAA
ATATTTTTTGAAACGCGACGGGTAAACAGAACATCAAATTCCGATCGCCT
GAAAGATATAGATGGTATATATTTTCACCGTGAATGATCATAAAGAACTA
GCCTTATTGCCGACCCAAAAAAATATGAGCGCCTAAAGGCTCGGAAAAAT
ATTACGGAAAAATCTCGGAACTCGTAAAATATTTCTCGTATTGCACTCGA
AGTCATGCGATAACTAGTACGTGAAGTCAGGTAACTTGCATCAGTGGAGG
GAAACTTGCGCATAGCTATCAAATGTCTGACCAATCGATCAAAGCAACAA
AATTTCAAAATAAAGGACTACGCAGCTCTGCTCACAGCTCTAGTATCTAC
CACTTATTTTTGAAAATTGTGTCTCAAAGATTAGCCTGGAGATCCATGCA
TGCTTTGATTTCTTATTCTATATACTGATGGAAATATATCTAGCATGGTA
CCGTAACTTGGTATAATGTCGACACAACATCCCTAGTCTAAATTCGACAC
CCTTTTCTAGAGCTGAAAAATAAAAAAAAGGTCAAAATTATTTTTCGTGG
TAAGGGAGGATAGATCTTTTTTCAATCACCGATTCCAACTTTCATATTAT
TCCTATCTCTAAAGAAGGGTGTCGAAATTAGAAGACGGATGTCGAGATTA
GACCAACTCACGGGCTGTATGGGCTGAGAGTTTGAATTTCCCAGATCCTA
ATAACGGTTGAAAACATAGCCAATCAAATTTTGTTACTCTTTTACTGGTC
TTTCTTAGAGAAAGCGCAAGTTCCGAAATTTGGTCTTTATTTTAGTAATT
GAAGACAGCACTAAATTCGAATTTCCCACTGTCAATTTTTTGAGGCAGAA
ATCTGCCTCACGGGTCATAGAAGTACTTCCTGTATTAGGGTAGGGCGTCA
ACAGTCATTTTTGGGGCAAAGTCAGAAAATTCAAGATGTAGTGTTTTTTT
ATGAAAATTTAACCTATTGTGAGGCATTCTGCGCAATTTNGGAAATAAAA
TCCCTGCTAAGAGCCATTTTTCAGGCCAAAAACCCAAATTTGGACTGAAA
TAATCTCTAAAACGTCAATAGACATGAGTCCAAACTTTCTTGCTGTGATA
GTATTCTGGAAATACTACAGGAAAATCAAAGTCATCTGGGCTTGGGATTT
GGGTATATCCACCATTTTGGAATTGAAATTCCTGCTAAAACGCAATATTT
CAATCAAAAATCCAATTTTTGACTCAAAAAATCTTAAAAATGGCAATAGT
CATGAACCTAAAATCTTTCTGCAGTGATAGTCTTCTGGAAATACTCCAGG
GAAATCAAAATTGTTTGGGATTAGGATTTGGGTATATCCGCCATTATGGA
ATTGAAATATGTGTTAAAACTGGCTAAAATACAACGTTTCAAGCAAAAAC
CCTGTTTTTGAATAAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTCCATAATGGCGGACATAGACGCATCCCA
GACCCAAATGATTTTGATTTCCCTGGAGTATCTCCAGTATACTATCACTG
AAAAAAAAATTTCAGTCAGCATGTAAACTCAGTTTGTAGAAGCTTGCCTT
AAAAAATGCTATTTTTTGAGAAATATGACTTTTTTTTGCTAAAAAGTGAA
TTTTGAAGACGCCATTATGATTTTTTGAAAACAGTGAAAAACTTGAAATT
CATTTTGCTGAAAGACTTTATTGAAGACTTCCATCTCTGAAAATTTCAGG
CATGTGAATCAATCAGTTTAAAGTTTATGAGCTTGCAAAATTGGCCTTAA
AAAGCATTTTGCTTCCCAAAATTGGCTTAAAACGGCTCTTTTAGGGCTCT
AATCGGCACAATTTTCAATCCAATATGATTATTTTGTTGTTTATTCATAA
AATTCAGTACAGCAAGTGAAAAAAATAAGATTTGCAATAGTAATGACATA
TTTACAGGCCTGAAAAGGCCAGAAAATGCCATTTTTTCCAATGTTTGCCT
GTAGTGCGAATCAGTACCCCCAGGGGGGTTCGGCCAATTTTGAACTTCTG
ACCTTAAAAATTGCGCAGAATGCCTCACTATAGGTTAAATTTTCATAAAA
AAACACTACATCTTGAATTTTCTGACTTTGACATTTGACGCCCCACCCTA
CCTGTATACATTAGATTATAAAAATACAGGACAGGTCTCCTGTCTACTCA
AAAATAGGCTATTAAGCGAAAATTGACCCCTAAAAATTATGAACTCTGGT
GGGGAGCAGATTTTGAAAGCCAATCAATTTTTATTCAAGTATATACATTG
AAAAGCTGATTTACAGTAGATTTCAAGAACTTTTTGTATGTAGGGAATCA
GATAGCAAACATAGTAAGTATAAGCGCACTGTGCCTTTAATTGGCTGTAA
AACCTTTTTGTGCGGTAGAAATTTCTCCAACTTTCAGCAATGAAAACGCA
CCTATTTAAACAAAATTAACCAGCGCATTTTTAATCTTTTTACTTCTTCA
TCTTCAATGAAGCTCTCAAAGTCAAATAGAATTAAGCACATAAGATTTTC
TTATAATTTTGAAATTCCGCTCGCGTCTTCGCTACGGTGGAATGCAATAC
GTAACTCACGCGGCAGAAAACTTGCCTTCTGTTGACTGATCATATAGGGC
GTTACCACCCTTGAAGCAGCGGGCGCTTTTATCATTCCTCAACTCTGTCC
AACATTTTGAATTAGTTAACAATAGTTCAAAAGGGTGCCCTCATCAAGGA
AGATCATTTGCTTTGGTCTCCGGCTTTGGGAAGTAGTAATGTTTTTGATT
GTTTTCGATGGAAAATATTAAGATACTTAAGTTTACAAGTGTCATTTAGT
TTTTGTTGGCTGATAGAATGGCAGGATCCTGGATGGATTCCCTAACTGCT
GTAGAGGGCTTCAAACTTTGTGTAATCTGGGTTTGGAATCACTTTTAGCT
GTCTGCTGATAGTCCTTGTGAATTTTAGAAGCAAACTTTTGACCTGGAGT
GGTTTATTGGTGAGTTTTGGCCACAAAAATAACATTTTCAGGATTTCTAT
TTTTGTGTAACCGTCAAAATGGCCAAAAAAATTGCTATTTTGGCAGATCT
GGAGCAAAATTCAAGATGGCATATTTTTTTGGAGCGACAACAAATTTTTT
TTTAAACTTTCAGTAAGGCGGCAATCACAAATCTTCATTTCGCTGCCTCG
TTGGGTCTAAAAAGTGAGTTGGTCGGTCGGTTGTAAAAATGAATGAATTT
CTTGAAACTGCCAGCCAGCCAGCAGCCAAAACAACCGCGTGTTATGGGTG
GTTTCAAATTATGACCTTAGAACACTGTGACCTTCGACCCAAAATGAAAA
AACTCAAAATTTTGTTGGCTTGCTTCGCTCGAACACTCTTCTTTGTGTTT
ATGATTTAGTTTTTCTATCATCAAATGTATTTACGTAAGCAAACTAAATG
TATAAAGAGGGGGCGCCAAAAACAAAAAATCTCTAAAAAGGGCACCCCAG
AAAAATATTCCCACCACGTCACTTTCAAAGGGAGGCTACCAATTGAGGGA
GTGGTCCTCCTACCTTAGGGGGGTTTTCCTGCCTAAGAAGAGGTGGTCTT
GACCCCTCTAGAAACTGATGTGTCAGTCCATGTTCGATTATGTCTATCAA
ATGTATGACGAGGTTTTCTCAACTAACAAAAGAGAAATAGAATTTCTATG
GCACTAATTTCTCTACAACCCGGGGCACTCTAGGTAAACAACCTACCATA
TGTGGCCCTTAAGGGTCCTTATTCCAAGCTGCCTAAAGTGCACTGTAAGG
GTCAAAATGAGCAAAGACGAGAAAAAGTACACTCAAAAGGTGTAAAATTT
AGAAAATTTGACCATACTTAGTGTTAAAATGGTCAATAATTTTCAAGAAA
ATGCACCAAAAGGGTAGATTTTTGGCCAAATTTGCTCAAATTTGGCTAAG
TTTTTTCTGCACTGTCTGGGTTCGACTTTAAAGGCCTTATTTCAGGCTGC
ACGTACGGTCGTGTTTAAGTCTATTCCCTTTTCCGGGCTCAACCAATAAC
ACATTTTTTGCACATGTCTTATATAAAAACTGGTTCTGTTAAACATCGTT
TGTATAAGTAGGAACTATTAGTAATGACCCGTAACGTACCGGAACAACCC
AGAACGACCCGAAACGACCCAGAACAACCAAGGTGGTCCGTTCCGCCCAT
GGGCGCAGAGGGCGCTGACGAACACGCAGGAAACTAAATGGCGGGAAAAT
GCTAAAACGCGGTAAACTGCGAACGCAGGAAACTTTACTGAGTAAATTAC
AGACCTTTTATTGTTAAAATAATTGTAAACATTTTGGAAATATTGTGCTA
TTTTCTGAATTTAAAGCTAGAAAAGCTAGAATAATCAATCAGAATATTTC
AACCAATCAGATTTCGTATTTACACTAAGCCTATTACATTTTTCGTCCGT
CGCCGTGATTATTCTGGTATACTTAACCCCAGTAGTTTCTCGTTCTAGAG
CAAATCTGATATTTTTTGTCTGCCTAGCTTTCGGGTTAGCCTGTAGAAGA
GTGCCGTAGCGCTAACGAAGGCTTCAAAAATTCGTCCGTCGTCCTGAGTT
ATCCACCTCACTAATAGCTGTACTTCAAAGGGTGACATTCCATCTCTCTT
CCACAGACCTGTAAAGCTCCCGATGGGGGCTAGACACTTGACTAAAATCA
TGCAATTTCACCAATTGGAAGATGTGAAATAGAGTTTGCCACCTACTTTT
TTTATCTTGCGCACTGAAAACAATTAAAATGCTAGATCCTATCCATTGGC
ACGAAATTTAAAAAGTCAATTTTTTTTGCTGGAGAAAGCTTTAAGTTGCC
TAGATAGCCCTTCGGCTTTTCAGATCTGTGCTCTCTCCCCGACGGGTGGA
ATATTGGCGCTTTGTCCGTGCCCGTGGGCGGAACGGACCGCCTTGGTTGT
TCTGGGTCGTTCCGGGTCGTTCTGGGTCGTTCCGGTACGTTACGGGTCAT
TACTACTAGTTCCTACTTATACAAACGACGTTCTGTTAAAATAAAAGATG
TATAAGTTATTTCTGATATCTACTTAACTTCGAATATTTGTTTTCCACAC
TGTCGATTAGTAGTATGTTACAAATCTTAGCTGAGAGCTGTGCCAACTGA
TTATCAAAAAACCTTGAAAAGTACTAAAAAAATTTTCAAAAAACCTTGAA
AAACGACTTAAAAATGACCGAAAAAAACCTTGAAAACCTTGAAAATCCTG
AAAAAAATCCGTAGACACCCTGCAAAATGCCACAAATGCGTTAGAAATCG
CTTGCAAAAAATCGGGAATAATAAAATTTTTGAACGAAGGAAACGTCATC
GACAGAAAAAGTCCGACAAATTTACTGACTCACAAACTCAATTCATTCGT
TCTTCTTTTTTGAAGTCGTTGCATACATATAATAGAAATCAAATATATTT
TAAGAAACTGAAACCCTGCAAAGACCAGTGTGAAAAACTCAAAAAAATGT
CCAACAATACGTATTGAAAAATACGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGCGTCAGCAGTGGTGTTAACGAAAGGC
GAGTGTCTCCGGTGCCTCCAGGACTCAATTCTTCTCAATTTTCAAGAGTC
GGTCGGACGACGCGATACAAAGATATTTGTGATTTCCGCCTGAGGCTTTC
TTTAGGTCTAGTTTATAGCCTCAAAAAGTGTCAGTGCGTTTTGGAAGTCT
CTTAAAGATGTGATCGATTGAAAACTTGCTTCGTTGTTTTTTCCTTTTTT
CTCTTAAAATGCTAAATCTGGTCCACTTAGGGGCTCTAAAGGTTCATTCT
TGTCAAGATATTGGTTGATCTTCTCTAGCCAACTAATCATTGGCATTATA
AGGGAACGACTGCAAAAAACTTCATGTCATTTCCATCAACAGATGACATT
TTATGACAGTTTCTTTATTTTTGAATAAGTACAGAATATATAAAAAAGTG
AGACTGGCGTCTGGCCTTTCCTACCAGCGCTAATATTTTCAGGAAAAGCC
TCAACCTTTCACAGTTTGGTGAATATTCATCATAAATATAAGCAGCAGGC
CCTTAGGAAGCATTTTCATTTTGAGGGGGCAAAGTGGCCAGCCATGGATT
GTCCCGAGGAAAACGAAAAAAATTTGCAATTTAATGTGTCTAGATTGCTT
GAAAACGCATCTAATTAAAGGATTATGTTCAAAATGAAGCCATTAATACA
AGATTTTTCTACCAACTTTTGGAGAAAACAAATCTTTTTTTTTTTGGGGG
GGGGGGGCAAATGCCCAAGTGTCGAGATTAGCTTTAGACTGTCCAATATC
TCTATATTAGTTTACACTAACAGCCTTACTTGTTGATTCTTAAACAAGTA
AGCAACATTATACTAGGGTGATGTTTTATGAGATACTGCAAACAATGCTT
TTTAAATCTTCTGGACAAGAAATATTTTACTTTCAAAACACACTTGAGGA
GTTATTATTGTTTCACACTGTCTTTCCTGTTTGAGTAAATATTAAACTCT
CATACACCGCAACACTTTTAGCAAAGCTTGGAGAACTCAGGAACTAAGGT
GTGGAAAGCACAGCTCCCTAGTTCTCAACTCCCCCCTAAAAGCTGAGTAT
ATAAAAACTAAGATTAAATAAAAGATCAAGGCTTGTACCACAGTAGCTTT
TACTGACATTTATAGGAGCACATCTAAACTAAAATCTGTTCTAATTTGCA
ACCTCTCCAGGTTTGAAAAATATGATTGCTGAAAAAACCAAAACAATTGA
TCCACTAGAGCCATTTCTCTTATTGGGGAAGAATGTTCGAGGAGCTGCTG
CTTCACAACTAGTGCAACAAGTAACTGAAGCCCCTAATGTATTTGTTTTT
GGAGAACTACTCCAACTTGATGGTATTAAGGAGTTGGAAAACAATGAAAC
ACATTCACAATATTGGAGGCTCCTACAATTGTATGCATTTGGTGTTTACA
AGGAGTTTCAAGAAAAAAAAGAAAGTCTTCCAGAATTGAATGATGCTCAA
ATAAGAAAGCTACGTCTTTTGACACTAGCTACACTAGCCTCAAAATCAAA
GTTTGTCTACTATGACAGTTTGAAAAGTAGCTTAGGACTTGATAATTTGA
GACAGTTGGAAGACTTGATTATTGAAGCGATATATGCAGATATCTTACAA
GGGAAAATCAACCAAAAGGAGAAGCGTTTGGAAGTTGATTTTGTGGTTGG
TCGAGATATAAAGCCAGAGATGATTGAAACCATCATTGATACTCTTCAAA
ACTGGTCAGCAAAATGTGAAGCTGCAATGGTAAATCTGGACGTACAAAGC
AGTCGTGCAAATGTAAACAAAGAATCTAAAGCCCAACACCGTAAAGATAT
CGAAAATAATATTGAGAGTATGAAGAAGATACATCGGGCACAGGATATGC
AACAAGTTCTGGAACCAGAATCCAGTGGTTCTCCAGTAGCTAGAAATCAG
AAGATGAAAGCATCTTCAAAGACTATAATGAAATCTGCAGTGAAACCATC
AACGTCAAGAACGAAATAATTTCACAACATTCACTCTAGAAACATTTCTT
ATTGTTTATAATTTGTATTTATTTGCAACAGCTTTCTTACAAGATCGAGA
AGAATCTTTCCATGAC

Coding sequence (CDS) from alignment at scaffold_225:83144..93909-

>TCONS_00053061 ID=TCONS_00053061|Name=TCONS_00053061|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_225:83144..93909- (Clytia hemisphaerica)
ATGATTGCTGAAAAAACCAAAACAATTGATCCACTAGAGCCATTTCTCTT
ATTGGGGAAGAATGTTCGAGGAGCTGCTGCTTCACAACTAGTGCAACAAG
TAACTGAAGCCCCTAATGTATTTGTTTTTGGAGAACTACTCCAACTTGAT
GGTATTAAGGAGTTGGAAAACAATGAAACACATTCACAATATTGGAGGCT
CCTACAATTGTATGCATTTGGTGTTTACAAGGAGTTTCAAGAAAAAAAAG
AAAGTCTTCCAGAATTGAATGATGCTCAAATAAGAAAGCTACGTCTTTTG
ACACTAGCTACACTAGCCTCAAAATCAAAGTTTGTCTACTATGACAGTTT
GAAAAGTAGCTTAGGACTTGATAATTTGAGACAGTTGGAAGACTTGATTA
TTGAAGCGATATATGCAGATATCTTACAAGGGAAAATCAACCAAAAGGAG
AAGCGTTTGGAAGTTGATTTTGTGGTTGGTCGAGATATAAAGCCAGAGAT
GATTGAAACCATCATTGATACTCTTCAAAACTGGTCAGCAAAATGTGAAG
CTGCAATGGTAAATCTGGACGTACAAAGCAGTCGTGCAAATGTAAACAAA
GAATCTAAAGCCCAACACCGTAAAGATATCGAAAATAATATTGAGAGTAT
GAAGAAGATACATCGGGCACAGGATATGCAACAAGTTCTGGAACCAGAAT
CCAGTGGTTCTCCAGTAGCTAGAAATCAGAAGATGAAAGCATCTTCAAAG
ACTATAATGAAATCTGCAGTGAAACCATCAACGTCAAGAACGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033515XLOC_033515Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053061-proteinTCONS_00053061-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053061-exon-scaffold_225-1575043694:93808..93909TCONS_00053061-exon-scaffold_225-1575043694:93808..93909Clytia hemisphaericaexon
TCONS_00053061-exon-scaffold_225-1575043694:83144..84049TCONS_00053061-exon-scaffold_225-1575043694:83144..84049Clytia hemisphaericaexon
TCONS_00053061-exon-scaffold_225-1510915933:93808..93909TCONS_00053061-exon-scaffold_225-1510915933:93808..93909Clytia hemisphaericaexon
TCONS_00053061-exon-scaffold_225-1510915933:83144..84049TCONS_00053061-exon-scaffold_225-1510915933:83144..84049Clytia hemisphaericaexon
TCONS_00053061-exon-scaffold_225-1491911889:93808..93909TCONS_00053061-exon-scaffold_225-1491911889:93808..93909Clytia hemisphaericaexon
TCONS_00053061-exon-scaffold_225-1491911889:83144..84049TCONS_00053061-exon-scaffold_225-1491911889:83144..84049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:83144..93909 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
150.113	151.277	98.2525	84.5367	36.3045	29.0251	49.7339	53.2281	45.933	38.5848	27.6834	23.5526	15.616	17.9001	22.4979	22.0153	37.8416	35.157	11.9697	15.0994	28.0557	25.1974	65.989	60.9231	45.4642	43.6177	19.764	17.4174	30.2967	32.311
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00053061 vs. Swiss-Prot (Human)
Match: CSN7B (COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.002e-52
Identity = 106/257 (41.25%), Postives = 158/257 (61.48%), Query Frame = 3 
Query:  114 MIAEKTKTIDPLEPFLLLGKNVRGAAASQLVQQVTEAPNVFVFGELLQLDGIKELENNETHSQYWRLLQLYAFGVYKEFQEKKESLPELNDAQIXXXXXXXXXXXXXXXKFVYYDSLKSSLGLDNLRQLEDLIIEAIYADILQGKINQKEKRLEVDFVVGRDIKPEMIETIIDTLQNWSAKCEAAMVNLDVQSSRANVNKESKAQHRKDIENNIESMKKIHR------AQDMQQVLEPESSGSPVARNQKMKASSKT 866
            M  E+  + + LE F+LL K   G+A + L+ QV EAP V+VFGELL+L  ++EL     ++ Y +LL L+A+G Y ++   KESLPEL+ AQ  KL+ LT+ +LAS+ K + Y  L   L + NLR+LEDLIIEA+Y DI+QGK++Q+ + LEVDF +GRDI+ + I  I+ TL  W   CEA ++ ++ Q  RAN  KE+  + ++ +E  + ++KK  +      AQ+M+Q L          + Q  K  SK 
Sbjct:    1 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEG-ANAAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKV 256
The following BLAST results are available for this feature:
BLAST of TCONS_00053061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN7B3.002e-5241.25COP9 signalosome complex subunit 7b OS=Homo sapien... [more]
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