TCONS_00057700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057700
Unique NameTCONS_00057700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=transcript|length=311bp
NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAA
AGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTA
TCGATTGGTACCAAAACATGGTTTCACTAATGCCAAgttCAAGAAGGAAT
ACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGA
ATTGATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGC
CGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTT
TTAACGATTGA
Run BLAST on NCBI

protein sequence of TCONS_00057700-protein

>TCONS_00057700-protein ID=TCONS_00057700-protein|Name=TCONS_00057700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SGRGKTSGKGHKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNAKFKKEY
TPVSLGRLQYFIDSQRIDPNEKITIETLWRSGAVSHKIKDGVRILGTVSF
ND
Run BLAST on NCBI

transcript from alignment at scaffold_297:232354..234161-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at scaffold_297:232354..234161- (Clytia hemisphaerica)
NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAA
AGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTA
TCGATTGGTACCAAAACATGGTTTCACTAATGCCAAGTAGGTAGTGTTGA
ATTTAAGGAGTACCATATAAAAATGGCTACTTTCAGGGATTTCCATTAGA
AAATTGTTCACGAGAAGTTAAATTGTTTGATTGTATTTTTTAAAAGCGAT
AGAATTTGATTCCCCGCCACAACACATGTTTTATGTTTTTTTATCCCCAT
AGCCTGGAAGCATTGGTTTTCCTTATTGTTGTTTACAACTTGGACTTTAG
TTTAGAAGTTGGTTATTTTTGCTCACAATTTCATTATGTGATTAAATAAT
GAACAATTGACAGACTGTTTTTTATTTGGTTGTATTACGTAGTTCGAAAT
CAGACCATGATTCCTACAAGGGTTGCAAAATTAAAGACTGAAGTTAAATC
ACGCTTTTACTCGAAATTTTTACGTGCTTGCTACATGACCTTCATTTCTG
GTTGGTTGGAATTTATCAACACTAATAAAGTTATGAACTGTAAGTTGTAA
AACAAGTAACATGAGAATAAAATCACGTGAACTATTTCGACTAATCATAT
GTTTTGACTGCACTGCTATAATTTTGCAACCCGTGTATTGAGGTCAAAGT
AGGGCGAGATGAACTCTCAAATTAGAATTTTCTAAATTCAGGTAGGCCTC
GATAGATACACTTCCGATGGGTAATTTGTTCTTTAGAGGGTTAGCAGAAG
CCTATGGTTTCATTAGAAAAAATCCATTATTATTGCTTTATGCACCATTG
CAATGTCTTCTACGGACCCAACAGCTGATTGGTTGAAAGTGACGTATTGA
CTGATTTTACGTCACTTACAACCAATCAGCTATTGGGTCCGTGATGTAAT
ATCAGAAGACATTGCAATGGTGCATATCATGAATTGGTTTATGTACTTTG
TAATAAAGTTGTTATATAAATTGTCAGATTTATGCAACATATCGCGTGCT
TTCTTTTAAAAGAAATGGATTCTTGACAATTTCCCTTTATGTAGAATCAT
ATTACAAAATGGCTTGCCCTGGCGTGCAACGTGTTCTTATTTTTCAACAT
TTTGATGGTTTTGATGCTTTCGTGTGGAGATTTTATTTATTAAGGAGACT
TTCTCGTTTTTAGTGGTTATTTTCTTTCATATTCTAAAAAACTCAAAAGA
AACTTGGGACGTTTGATGGTCAAAATTATTCTTACTAGAAAGAAGATGTG
AAATGCTACATTTTCGATTTGGTCAACTATATCACTGAGCTTTAATGACT
CAATCGAGCTTTTTGATATTTTTATTTCTCGTTATCTACCTCGAAATTTT
GAATGTCTTGAAAAGTGAATAGAAACAACACGGCGGGCTGGTCAGCTTTA
AACTACAGCCCCTTCTATTGACAAGCAAAATACACGTGTTTTGTCTTCAG
ACTTTAATTTTGCAACCTGTCTAATTGCGAGTTTTGTCTAAACACATTGT
CACATGAAATATGTTGGCAGTTCGCCTCTATTGTATGTAAAGAAATATTA
TGTTAATGATGTTATATGTTTCAAATATTTTAGGTTCAAGAAGGAATACA
CACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGAATT
GATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGCCGT
TTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTTTTA
ACGATTGA

Coding sequence (CDS) from alignment at scaffold_297:232354..234161-

>TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_297:232354..234161- (Clytia hemisphaerica)
GTTCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCA
TTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATAGAAACGTTG
TGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCT
CGGAACAGTGAGTTTTAACGATTGATCAGGGCGTGGCAAGACAAGTGGTA
AAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGAATTGGTTTC
GAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACATGGTTTCAC
TAATGCCAAGTTCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCC
AATACTTCATTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATA
GAAACGTTGTGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGT
TCGAATCCTCGGAACAGTGAGTTTTAACGATTGATCAGGGCGTGGCAAGA
CAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGA
ATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACA
TGGTTTCACTAATGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036381XLOC_036381Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057700-proteinTCONS_00057700-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057700-exon-scaffold_297-1575043694:234026..234161TCONS_00057700-exon-scaffold_297-1575043694:234026..234161Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1575043694:232354..232528TCONS_00057700-exon-scaffold_297-1575043694:232354..232528Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1510915933:234026..234161TCONS_00057700-exon-scaffold_297-1510915933:234026..234161Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1510915933:232354..232528TCONS_00057700-exon-scaffold_297-1510915933:232354..232528Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1491911889:234026..234161TCONS_00057700-exon-scaffold_297-1491911889:234026..234161Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1491911889:232354..232528TCONS_00057700-exon-scaffold_297-1491911889:232354..232528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:232354..234161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.9777	40.686	54.7201	60.0825	29.5392	18.5256	43.8067	40.5928	31.0569	36.6544	24.6578	23.6189	22.1987	23.2937	31.786	32.2044	64.2079	57.7853	12.936	14.3101	25.8846	29.0225	59.0005	48.9284	34.7166	24.9869	27.1747	25.44	40.1342	28.3088
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR005749Ribosomal_L15_bac-type
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00057700 vs. Swiss-Prot (Human)
Match: RM15 (39S ribosomal protein L15, mitochondrial OS=Homo sapiens GN=MRPL15 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.198e-21
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 3 
Query:   33 HKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNA-KFKKEYTPVSLGRLQYFIDSQRIDPNEKITIETL 236
            HKG+ QRGT PR+GFEGGQTPFY  +PK+GF     F+++Y P+SL RLQY ID  R+DP++ I +  L
Sbjct:   53 HKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQL 121
The following BLAST results are available for this feature:
BLAST of TCONS_00057700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM159.198e-2156.5239S ribosomal protein L15, mitochondrial OS=Homo s... [more]
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