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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054309 ID=TCONS_00054309|Name=TCONS_00054309|organism=Clytia hemisphaerica|type=transcript|length=1152bp
TTACTAGTTATTACATCAGGCGAACTAGTAAAACACAGTATATAAGAAAG
CTCAAATCCCATCAATTTCATTCCAAAAGCTGACAAAAAACGGAAtgtgt
aaaaaatcaaatttgaaacagTTTCAACAAGTTCATTTCAACCATGATTA
TCACAAAAGAGAGTTTATTATCACATGATACCATTTACATTTTCGGCTAC
GGCTCGTTGATATGGAAACCAGATATCGAATATACCAAGAGGTTCATTGC
TTATCTTTCAGGTCACGAGCGACGGTTTTGGCAAGGCAGTCCGCATCATC
GTGGAAATGTACAGAAACCTGGACGTGTGTTGACTTTGAAACAAAGCCCA
GGAGGGCGTGTATGGGGCGTTGTATACGAAGTCAAAGGAAAGGACAAAAT
CAAAACAGCATGTGATCGTTTATACGTTCGAGAACAATCCATCGGATGTT
ATGATATGAAAATGTTACCGGTTTACTCTAAAGATAGCGCTGCGTTCCAT
GGTAAACCTATACCAGCCATCATTTATTATGCAACGCCACACAATCCGAA
CTACACAGGGgatgaaggagaagaaaaaattgccaaaattatCGCAACTT
CACATGGGGTATCTGGGCATAATATCGAGTATCTGTTCCGGCTTGTTGAT
TTTATGCGAGAATCTCTACCGAATGAATCGGAACCACATTTATACACGTT
GGATAGTTTAGTAAGGACCAAAGTTGGACTTTGTTGTAAAACACCTCTGT
CATGGCGTTTATTGTTGCAATGTGATGATCGGTTCCGTAGAATTGTTGGC
TCTGGGAAAGAGAATGTCCGGCGTACTTTGAGTAGCGAGGACGAACAAAA
CAAGTCTTCAATGGCCGTCTGTACTTAGAGACgtcttttgttatattttt
tattgtacCAAAAATATTTGGGGAGGGAGCTATTTTGACATTTGAGCAAG
TTTAAAGCATGACCGTTTTGGCGGTTTTAAATCTAGCTAATTTTACTATG
ATGATTTCTGAAAATGTCTTTACGAACCTTCACTCTACCATAAATTCTTA
ATCTTCAACTGTAGTAAATTTAATAATattatttaatatttattgAGTAT
TAATTTTCTATTTATCTTTTCTATATGCGCAGATTTCATAAATAAAAGTC
GG Run BLAST on NCBI transcript from alignment at scaffold_242:53723..55073- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054309 ID=TCONS_00054309|Name=TCONS_00054309|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_242:53723..55073- (Clytia hemisphaerica)
TTACTAGTTATTACATCAGGCGAACTAGTAAAACACAGTATATAAGAAAG
CTCAAATCCCATCAATTTCATTCCAAAAGCTGACAAAAAACGGAATGTGT
AAAAAATCAAATTTGAAACAGTTTCAACAAGTTCATTTCAACCATGATTA
TCACAAAAGAGAGTTTATTATCACATGATACCATTTACATTTTCGGCTAC
GGCTCGTTGATATGGAAACCAGATATCGAATATACCAAGAGGTTCATTGC
TTATCTTTCAGGTCACGAGCGACGGTTTTGGCAAGGCAGTCCGCATCATC
GTGGAAATGTACAGAAACCTGGACGTGTGTTGACTTTGAAACAAAGCCCA
GGAGTAAGTTTTGATGAGGTTGAATCTATTATCACGAGCTAATACACTGC
AAAATAATAGATAAATCGTCTAGTTAATTACAAAATAGCGGGCTTGCTGC
GAAGATATGGTCTTTTTTAGCCTACTCATATATAGAGTATGCAACTGACG
TTCAAAGCTAATCTTGTTTTTTCTCTATTATAACTTTCTCTTGAAATTTT
AGGGGCGTGTATGGGGCGTTGTATACGAAGTCAAAGGAAAGGACAAAATC
AAAACAGCATGTGATCGTTTATACGTTCGAGAACAATCCATCGGATGTTA
TGATATGAAAATGTTACCGGTTTACTCTAAAGATAGCGCTGCGTTCCATG
GTAAACCTATACCAGCCATCATTTATTATGCAACGCCACACAATCCGAAC
TACACAGGGGATGAAGGAGAAGAAAAAATTGCCAAAATTATCGCAACTTC
ACATGGGGTATCTGGGCATAATATCGAGTATCTGTTCCGGCTTGTTGATT
TTATGCGAGAATCTCTACCGAATGAATCGGAACCACATTTATACACGTTG
GATAGTTTAGTAAGGACCAAAGTTGGACTTTGTTGTAAAACACCTCTGTC
ATGGCGTTTATTGTTGCAATGTGATGATCGGTTCCGTAGAATTGTTGGCT
CTGGGAAAGAGAATGTCCGGCGTACTTTGAGTAGCGAGGACGAACAAAAC
AAGTCTTCAATGGCCGTCTGTACTTAGAGACGTCTTTTGTTATATTTTTT
ATTGTACCAAAAATATTTGGGGAGGGAGCTATTTTGACATTTGAGCAAGT
TTAAAGCATGACCGTTTTGGCGGTTTTAAATCTAGCTAATTTTACTATGA
TGATTTCTGAAAATGTCTTTACGAACCTTCACTCTACCATAAATTCTTAA
TCTTCAACTGTAGTAAATTTAATAATATTATTTAATATTTATTGAGTATT
AATTTTCTATTTATCTTTTCTATATGCGCAGATTTCATAAATAAAAGTCG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054309-exon-scaffold_242-1575043694:54721..55073 | TCONS_00054309-exon-scaffold_242-1575043694:54721..55073 | Clytia hemisphaerica | exon |
| TCONS_00054309-exon-scaffold_242-1575043694:53723..54521 | TCONS_00054309-exon-scaffold_242-1575043694:53723..54521 | Clytia hemisphaerica | exon |
| TCONS_00054309-exon-scaffold_242-1510915933:54721..55073 | TCONS_00054309-exon-scaffold_242-1510915933:54721..55073 | Clytia hemisphaerica | exon |
| TCONS_00054309-exon-scaffold_242-1510915933:53723..54521 | TCONS_00054309-exon-scaffold_242-1510915933:53723..54521 | Clytia hemisphaerica | exon |
| TCONS_00054309-exon-scaffold_242-1491911889:54721..55073 | TCONS_00054309-exon-scaffold_242-1491911889:54721..55073 | Clytia hemisphaerica | exon |
| TCONS_00054309-exon-scaffold_242-1491911889:53723..54521 | TCONS_00054309-exon-scaffold_242-1491911889:53723..54521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:53723..55073 - |
Blast
BLAST of TCONS_00054309 vs. Swiss-Prot (Human)
Match: CHAC1 (Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 9.583e-46 Identity = 81/195 (41.54%), Postives = 113/195 (57.95%), Query Frame = 3
Query: 180 TIYIFGYGSLIWKPDIEYTKRFIAYLSGHERRFWQGSPHHRGNVQKPGRVLTLKQSPGGRVWGVVYEVKGKDKIKTACDRLYVREQSIGCYDMKMLPVYSKDSAAFHGKPIPAIIYYATPHNPNYTGDEGEEKIAKIIATSHGVSGHNIEYLFRLVDFMRESLPNESEPHLYTLDSLVRTKVGLCCKTPLSWRLL 764
++IFGYGSL+W+PD Y+ + ++ G+ RRFWQG HRG+ + PGRV+TL + G WGV Y+V+G +++ A L VRE +G YD K + Y +D+ +P+ A+ Y ATP NP Y G EE IA I G SGHN+EYL RL DFM+ P + HL + V T + C T + L+
Sbjct: 74 ALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG-EQVSKALKYLNVREAVLGGYDTKEVTFYPQDAP---DQPLKALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAVGTMLPCFCPTEQALALV 264
The following BLAST results are available for this feature:
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