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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054775 ID=TCONS_00054775|Name=TCONS_00054775|organism=Clytia hemisphaerica|type=transcript|length=3155bpRun BLAST on NCBI protein sequence of TCONS_00054775-protein >TCONS_00054775-protein ID=TCONS_00054775-protein|Name=TCONS_00054775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp ILISDTILSRKMSISQNYCVKFAERPGVDGEPQPKHFSYTKCDFPSLEDGRun BLAST on NCBI transcript from alignment at scaffold_245:297967..311522+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054775 ID=TCONS_00054775|Name=TCONS_00054775|organism=Clytia hemisphaerica|type=transcript|length=13556bp|location=Sequence derived from alignment at scaffold_245:297967..311522+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:297967..311522+ >TCONS_00054775 ID=TCONS_00054775|Name=TCONS_00054775|organism=Clytia hemisphaerica|type=CDS|length=4308bp|location=Sequence derived from alignment at scaffold_245:297967..311522+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054775 vs. Swiss-Prot (Human)
Match: PTGR2 (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 6.906e-87 Identity = 165/343 (48.10%), Postives = 220/343 (64.14%), Query Frame = 2
Query: 59 VKFAERPGVDGEPQPKHFSYTKCDFP-SLEDGENFVIVKTLYLSVDPAQRCQMNEDTGVTYLLPWQIDEVITGLGSCVIVESRNPKFKKGDLVLASLGKCKWQLYWKTN-VEDLNPCVADGKLD--IVYYGLPGLTSILGVQLHGKLTSETSGSNKTFVVXXXXXXXXXXXXQFAKCYGCSNVIGICGSDAKCHLLKERLNFTGVINYKTENVEDRLRELCPNGVDLYFDNVGGTISEAVITNMVTEGRIILCGAISQYNKDLPYPPPVSERVSKILKERSIFNDRFLVLRYEDQFASGMESLKQL--QPHVELLETVYEGLEKAGNAFCDMMNGKNIGKMLV 1069
V RPG +G P ++F + P ++ +G+ V V+TLYLSVDP RC+MNEDTG Y+ PWQ+ +V+ G G +I ES++ KGD V + + ++ N +E ++P + DG L + G+PGLTS++G+Q G +T+ GSNKT VVS AAG+CGS+AGQ GCS V+GICG+ KC LL L F INYK +NV ++LRE CP GVD+YFDNVGG IS+ VI+ M IILCG ISQYNKD+PYPPP+S + I KER+I +RFLVL Y+D+F G+ L Q + +++ ETV GLE G AF MM G NIGK +V
Sbjct: 6 VVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ--VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITA---GSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 343 The following BLAST results are available for this feature:
BLAST of TCONS_00054775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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