TCONS_00005537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005537
Unique NameTCONS_00005537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005537 ID=TCONS_00005537|Name=TCONS_00005537|organism=Clytia hemisphaerica|type=transcript|length=1820bp
GAAACTCTATACAAAACAAAGGGTTTATGAACTCCCTGAAAATGAATTAA
ACAGGACATGGTGATTATCCTACGTTGTTTGGATGGAATAACAATGACGT
AATCGATCATTTAAAAAGtgatcgaattttttttttgaattgaatcgCCT
AAGAATGTTCATTTTGGTTTTAACGTTGTTTCACTTTCAGTGTTTTCAGT
AGGCTGTTTAATCTTTGGAAGGAGGTGGCACCATGAAGTTTTTTCTAATA
TTATTGGTGTTTTGTTTGGTGAGTTCTACAGTACAAGAATGCCCTTTTCA
ATGTGAATGCGCAGACCACAAAGTCAAATGTAGCCTGTTGACGGATCAGA
GTGTGGCTGGCGTTTTAAGAAGACTATCGACAAACTCGATCAAGAAATTG
GATCTATCCAAAAATGTTCTAACATCTTTCAATATGGTATTACTGAAAGA
TTTTACCAAGTTAGAGACTTTAGTTTTGAACGAAAATAAATTGAGTTCTG
TACCAAGTGGGATATCTCACCATGTACCGAGCTTGAAGAAGCTACACATC
AGACATAACTCGTTGTTAAGGAATCTCACCAAACATGCTCTAGGAGGAGC
CTACAATTTGGAAGTTCTGGATGTTAAAGACAGTAGCATTTCAAATCTGT
TGCACGATggtattttttataataacTCTAAATTGACTGTATTGAATCTG
GCTAGCAACAAGATTGCTGCAATGGAGAAATACGTTTTTGCTGGATTAAG
GAAACTGGTGAGCCTTGATTTGAACAATAATCGTATCTCGGATTTAAGAC
CTGGAACTTTCAAACCGCTCAACAGTATACAACGCATCCTTATTAACTCA
AACAATCTAATCCACATCCATAACCAGGTTTTCACTGGACTCAAATCAGT
CAAATTGATCTCCTTAACAGGGAACCAGTTAAGAGCTCTTGGTCCTCAAG
CTTTCCAAAGTCTACCGAACGTGACAACAATCTCCCTAGCTGATAACTCA
CTTGAATCGTTCTCCAAATCTGCATTTAAATACTCTTACATCAGCAAGGA
AATCGATTTAAGAGGTAATCCTATACATTGCAGTTGCTTTATAACGTCTT
TCGAACTCAGAACACTGAACTCACAAGGGAAACTAAACGGCGCCTGCCTG
ACGCCGCTACAATTCACCGGCCGATCATTAAAATCGATCAAGCGGAACGA
GTTAGGATGCACAACGTGTGATTTTAACGAATGTAAAAACAACGCTACTT
GTATCATCAAAGACGATTATTATTTCTGCCAATGCCTTAAAGGTTACCAA
GGAAAATTTTGCCAGACAATCACCGAGGATGAAGATTCTACAATCCTTTG
GGTTGTTATTTTGATCATTATTGTTTTGGTGGCCGTGATCTGTTCGGTGA
TTGGTTGGTGGTATCACCGTAAACAAAAGGGATTGTCTTTTTGTGTTATC
ACCAAAACacaatgttgttgttgttgtttcatCACTGTTGTtattctttg
tttacttttgttCTTTATGTTACGTATTGTGTCCTACATGTACGAACACG
CTTGAAAAAGGACAATCACTTTCTCAACGCACTCCATTTACGATTTTACT
GATGGCTGGTGTACAATCGTTGTTTGGCGAGTACGATCAAGTTTATTAAA
AAGCGGAATATCAAACACTGAATCAATTATTTTATTATATCACATTCATT
CATTATCCATATTTATACTGTTTAACAAATTGATAATCCtatatattttt
aatgaaaaacttaAACCCAATACGGTACTCGTAAAATTCTTCttgatttt
aacttttttttgtgttCTGC
Run BLAST on NCBI

protein sequence of TCONS_00005537-protein

>TCONS_00005537-protein ID=TCONS_00005537-protein|Name=TCONS_00005537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MKFFLILLVFCLVSSTVQECPFQCECADHKVKCSLLTDQSVAGVLRRLST
NSIKKLDLSKNVLTSFNMVLLKDFTKLETLVLNENKLSSVPSGISHHVPS
LKKLHIRHNSLLRNLTKHALGGAYNLEVLDVKDSSISNLLHDGIFYNNSK
LTVLNLASNKIAAMEKYVFAGLRKLVSLDLNNNRISDLRPGTFKPLNSIQ
RILINSNNLIHIHNQVFTGLKSVKLISLTGNQLRALGPQAFQSLPNVTTI
SLADNSLESFSKSAFKYSYISKEIDLRGNPIHCSCFITSFELRTLNSQGK
LNGACLTPLQFTGRSLKSIKRNELGCTTCDFNECKNNATCIIKDDYYFCQ
CLKGYQGKFCQTITEDEDSTILWVVILIIIVLVAVICSVIGWWYHRKQKG
LSFCVITKTQCCCCCFITVVILCLLLFFMLRIVSYMYEHA
Run BLAST on NCBI

transcript from alignment at sc0000053:622650..624469

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005537 ID=TCONS_00005537|Name=TCONS_00005537|organism=Clytia hemisphaerica|type=transcript|length=1820bp|location=Sequence derived from alignment at sc0000053:622650..624469 (Clytia hemisphaerica)
GCAGaacacaaaaaaaagttaaaatcaaGAAGAATTTTACGAGTACCGTA
TTGGGTTtaagtttttcattaaaaatatataGGATTATCAATTTGTTAAA
CAGTATAAATATGGATAATGAATGAATGTGATATAATAAAATAATTGATT
CAGTGTTTGATATTCCGCTTTTTAATAAACTTGATCGTACTCGCCAAACA
ACGATTGTACACCAGCCATCAGTAAAATCGTAAATGGAGTGCGTTGAGAA
AGTGATTGTCCTTTTTCAAGCGTGTTCGTACATGTAGGACACAATACGTA
ACATAAAGaacaaaagtaaacaaagaataACAACAGTGatgaaacaacaa
caacaacattgtGTTTTGGTGATAACACAAAAAGACAATCCCTTTTGTTT
ACGGTGATACCACCAACCAATCACCGAACAGATCACGGCCACCAAAACAA
TAATGATCAAAATAACAACCCAAAGGATTGTAGAATCTTCATCCTCGGTG
ATTGTCTGGCAAAATTTTCCTTGGTAACCTTTAAGGCATTGGCAGAAATA
ATAATCGTCTTTGATGATACAAGTAGCGTTGTTTTTACATTCGTTAAAAT
CACACGTTGTGCATCCTAACTCGTTCCGCTTGATCGATTTTAATGATCGG
CCGGTGAATTGTAGCGGCGTCAGGCAGGCGCCGTTTAGTTTCCCTTGTGA
GTTCAGTGTTCTGAGTTCGAAAGACGTTATAAAGCAACTGCAATGTATAG
GATTACCTCTTAAATCGATTTCCTTGCTGATGTAAGAGTATTTAAATGCA
GATTTGGAGAACGATTCAAGTGAGTTATCAGCTAGGGAGATTGTTGTCAC
GTTCGGTAGACTTTGGAAAGCTTGAGGACCAAGAGCTCTTAACTGGTTCC
CTGTTAAGGAGATCAATTTGACTGATTTGAGTCCAGTGAAAACCTGGTTA
TGGATGTGGATTAGATTGTTTGAGTTAATAAGGATGCGTTGTATACTGTT
GAGCGGTTTGAAAGTTCCAGGTCTTAAATCCGAGATACGATTATTGTTCA
AATCAAGGCTCACCAGTTTCCTTAATCCAGCAAAAACGTATTTCTCCATT
GCAGCAATCTTGTTGCTAGCCAGATTCAATACAGTCAATTTAGAgttatt
ataaaaaataccATCGTGCAACAGATTTGAAATGCTACTGTCTTTAACAT
CCAGAACTTCCAAATTGTAGGCTCCTCCTAGAGCATGTTTGGTGAGATTC
CTTAACAACGAGTTATGTCTGATGTGTAGCTTCTTCAAGCTCGGTACATG
GTGAGATATCCCACTTGGTACAGAACTCAATTTATTTTCGTTCAAAACTA
AAGTCTCTAACTTGGTAAAATCTTTCAGTAATACCATATTGAAAGATGTT
AGAACATTTTTGGATAGATCCAATTTCTTGATCGAGTTTGTCGATAGTCT
TCTTAAAACGCCAGCCACACTCTGATCCGTCAACAGGCTACATTTGACTT
TGTGGTCTGCGCATTCACATTGAAAAGGGCATTCTTGTACTGTAGAACTC
ACCAAACAAAACACCAATAATATTAGAAAAAACTTCATGGTGCCACCTCC
TTCCAAAGATTAAACAGCCTACTGAAAACACTGAAAGTGAAACAACGTTA
AAACCAAAATGAACATTCTTAGGcgattcaattcaaaaaaaaaattcgat
caCTTTTTAAATGATCGATTACGTCATTGTTATTCCATCCAAACAACGTA
GGATAATCACCATGTCCTGTTTAATTCATTTTCAGGGAGTTCATAAACCC
TTTGTTTTGTATAGAGTTTC

Coding sequence (CDS) from alignment at sc0000053:622650..624469

>TCONS_00005537 ID=TCONS_00005537|Name=TCONS_00005537|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000053:622650..624469 (Clytia hemisphaerica)
TCAAGCGTGTTCGTACATGTAGGACACAATACGTAACATAAAGaacaaaa
gtaaacaaagaataACAACAGTGatgaaacaacaacaacaacattgtGTT
TTGGTGATAACACAAAAAGACAATCCCTTTTGTTTACGGTGATACCACCA
ACCAATCACCGAACAGATCACGGCCACCAAAACAATAATGATCAAAATAA
CAACCCAAAGGATTGTAGAATCTTCATCCTCGGTGATTGTCTGGCAAAAT
TTTCCTTGGTAACCTTTAAGGCATTGGCAGAAATAATAATCGTCTTTGAT
GATACAAGTAGCGTTGTTTTTACATTCGTTAAAATCACACGTTGTGCATC
CTAACTCGTTCCGCTTGATCGATTTTAATGATCGGCCGGTGAATTGTAGC
GGCGTCAGGCAGGCGCCGTTTAGTTTCCCTTGTGAGTTCAGTGTTCTGAG
TTCGAAAGACGTTATAAAGCAACTGCAATGTATAGGATTACCTCTTAAAT
CGATTTCCTTGCTGATGTAAGAGTATTTAAATGCAGATTTGGAGAACGAT
TCAAGTGAGTTATCAGCTAGGGAGATTGTTGTCACGTTCGGTAGACTTTG
GAAAGCTTGAGGACCAAGAGCTCTTAACTGGTTCCCTGTTAAGGAGATCA
ATTTGACTGATTTGAGTCCAGTGAAAACCTGGTTATGGATGTGGATTAGA
TTGTTTGAGTTAATAAGGATGCGTTGTATACTGTTGAGCGGTTTGAAAGT
TCCAGGTCTTAAATCCGAGATACGATTATTGTTCAAATCAAGGCTCACCA
GTTTCCTTAATCCAGCAAAAACGTATTTCTCCATTGCAGCAATCTTGTTG
CTAGCCAGATTCAATACAGTCAATTTAGAgttattataaaaaataccATC
GTGCAACAGATTTGAAATGCTACTGTCTTTAACATCCAGAACTTCCAAAT
TGTAGGCTCCTCCTAGAGCATGTTTGGTGAGATTCCTTAACAACGAGTTA
TGTCTGATGTGTAGCTTCTTCAAGCTCGGTACATGGTGAGATATCCCACT
TGGTACAGAACTCAATTTATTTTCGTTCAAAACTAAAGTCTCTAACTTGG
TAAAATCTTTCAGTAATACCATATTGAAAGATGTTAGAACATTTTTGGAT
AGATCCAATTTCTTGATCGAGTTTGTCGATAGTCTTCTTAAAACGCCAGC
CACACTCTGATCCGTCAACAGGCTACATTTGACTTTGTGGTCTGCGCATT
CACATTGAAAAGGGCATTCTTGTACTGTAGAACTCACCAAACAAAACACC
AATAATATTAGAAAAAACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003155XLOC_003155Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005537-proteinTCONS_00005537-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005537-exon-sc0000053-1491911889:622650..624469TCONS_00005537-exon-sc0000053-1491911889:622650..624469Clytia hemisphaericaexon
TCONS_00005537-exon-sc0000053-1510915933:622650..624469TCONS_00005537-exon-sc0000053-1510915933:622650..624469Clytia hemisphaericaexon
TCONS_00005537-exon-sc0000053-1575043694:622650..624469TCONS_00005537-exon-sc0000053-1575043694:622650..624469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:622650..624469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132133	0.0214751	0.124673	0.170763	2.94012	1.99477	0.622886	0.92772	0.668076	1.99984	1.361	0.674666	29.0728	20.5035	18.6573	14.3993	6.26562	18.4359	40.078	32.1645	0.894277	0.81008	0.126251	0.0229561	0.307375	0.189917	0.332165	0.0322268	0.0488858	0.0747104
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00005537 vs. Swiss-Prot (Human)
Match: CPN2 (Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.379e-18
Identity = 81/290 (27.93%), Postives = 142/290 (48.97%), Query Frame = 2 
Query:  368 RRL--STNSIKKLDLSKNVLTSFNMVLLKDFTKLETLVLNENKLSSVPSGISHHVPSLKKLHIRHNSLLRNLTKHALGGAYNLEVLDVKDSSISNLLHDGIFYNNSKLTVLNLASNKIAAMEKYVFAGLRKLVSLDLNNNRISDLRPGTFKPLNSIQRXXXXXXXXXXXXXQVFTGLKSVKLISLTGNQLRALGPQAFQSLPNVTTISLADNSLESFSKSAFKYSYISKEIDLRGNPIHCSC-------FITSFELRTLNSQGKLNGACLTPLQFTGRSLKSIKRNELGC 1210
            RRL      +K L+L++N+L      L    T L+TL L+ N LS +P G+   + SL++L +  N++   L        + LE L ++ ++I++L    IF +   LT L+L  N +  +   +FA    LV L L +N++  +  GTF  L++++ ++++ N + H+   +F  L+ +  + L  N L AL P  FQ+L  +  +SL+ N L +  +  F  +Y    + L GNP  C C       ++  +  R LN Q      C  P    G+ + ++   +L C
Sbjct:  162 RRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNI-SELPPQVFSQLFCLERLWLQRNAITHL-PLSIFASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNIQTY----CAGPAYLKGQVVPALNEKQLVC 445
The following BLAST results are available for this feature:
BLAST of TCONS_00005537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPN21.379e-1827.93Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CP... [more]
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