TCONS_00005501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005501
Unique NameTCONS_00005501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2075

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005501 ID=TCONS_00005501|Name=TCONS_00005501|organism=Clytia hemisphaerica|type=transcript|length=2075bp
CTTTCCTCTCCCCAGGGTCTCAAAAGTCGGGAATCGCCGCCGCTAGTTGT
CAAGATGGGAAATATGGGTGTTTCAAGATTTTACTCTTACTTGCTCTTGT
AGcaaaaggactaaaaaattttattggtgTTTAAACAGCCTGCATCTGAT
GAACAAATCATGAAGGAATACAAAGTTGTTGTTCTTGGTTCTGGTGGTGT
TGGTAAAAGTGCATTAACAGTTCaatttgtatcaaatcaatTCTTGGAAA
AGTATGATCCAACCATTGAGGACTTTTATAGAAAAGCTATTGAAGTAGAT
CATTCGCCCTCCATATTGGAAATCTTAGATACTGCAGGAACTGAACAATT
TGCCTCAATGAGAGATTTGTATATTAAAAACGGGCAAGGATTTTTGCTTG
TGTACTCCATTACCAATAAACAAACATTGCAAGATGTGGCACCTATGAGA
GACCAAATAGTACGTTTGAAAGGCCAGGAAAATGTTCCAATGATTTTAGT
AGGAAATAAACGAGACATTTATGATGAACGTGAAGTAACACAGGAAGAAG
GTGAACAACTGGCAGAGCGTTGGCGATGTCCATTTTTTGAGACATCAGCC
AAAACAACCCATAACGTCAATGATGTATTTGCTGAGATTGTACGACGTAT
TAATATTGTCAATCAAAAACAAGGTAAACGAAAATGCTGCAATATTCTAT
AGATTATATTATGTTTCACTAAATTATTAGATACGTTTTAACAATACTCA
AAATGAATGGTATATATATATCATGTTTTCTTTGGATATGAGTGAGAATG
GTTATTCAATGGCTCCTATTCTATGTATTGGATCAACctttaaatttgaa
atactGGGCTTTGCAAAAGCCCTATAGATTACGCAACAAAATGTATTTTA
GATGGTAGAATATTGTGACAACAGAGATTATTGATatagttttaaaaaaa
tgataatataCAAACGATAATGTGTACTTTTAGATCATGTTACTATTTGA
TGATAGTTTGAACTGTCacataaaaattgataaacaaAAGGATATTATGT
ATGGTAGATCATGGACAGTTTACATATGAATAAAATGATCCTTTTTGTTT
TCTGGCTTTGGCTGATTTTAGTCTCTTATTATGTAATTAGATGACACATT
GCCTTGCTAGATGACACATTGCCTTGCTAAAAGTGATTAGGATGTAAttg
ttttctcttttaaaaAGGAAAAGACCGTGCATCAATTCATTCTTGTCAAA
ATAAATGATTTAATTGATAAATTGACAGAATGCCACTTTGAAATTCCTTT
TGTCACAAGTGTTGTGGTTTGTTGTACAAATAAAACAAgcttttatctat
ttttttgcttttaactCAAGACCATCAAAAGAATGATAAAACCTTAAATA
TCTAAGAGATTTGCTATAAGCTTAATTCATGATAGAAGCTTCTTTCATTT
CGtctaacttttttatttatttttctattagATCAATATAAAATAGCATC
ATACACACTTTCTTccatttatgaaatattttttgccagGCTTCTatgtt
taatttgaaaaatcatcGTTATCTACACGAAGgctatttttcatgtttta
taatgaaaattttgtGGCCACAATATTAAGATAAACTTTAAgggaaaaaa
aaacttcaattgTACACGAAATTCAGACTTTTATcttatagcaatttttt
acttttccctTTCTCACACAAGGTTCACCTATTTCCCTCTCTCCCTAGTG
TTTGACACAAAGTCGGAGTCAAAACAAGACATTTCAGAATAAAGCACcgt
tttttgattttatgcCACTTTTCACCTGCAActgtattttattaattttt
gtatatttttttctgaaacagtattttattaaaatatataaTCAGAATTT
CTCTCttataaaatacttttaaatgaTCTtcgattttttgttgttttatt
gaataattttttttgtttttatgaaatACTATCACTTTTAAGAAATCGTT
CTTCATAAATTTGGACCCGTCCCCCATTAAGATTTTGGGAGCACTACACT
ATTTTAGattttctgaagatttttc
Run BLAST on NCBI

protein sequence of TCONS_00005501-protein

>TCONS_00005501-protein ID=TCONS_00005501-protein|Name=TCONS_00005501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MKEYKVVVLGSGGVGKSALTVQFVSNQFLEKYDPTIEDFYRKAIEVDHSP
SILEILDTAGTEQFASMRDLYIKNGQGFLLVYSITNKQTLQDVAPMRDQI
VRLKGQENVPMILVGNKRDIYDEREVTQEEGEQLAERWRCPFFETSAKTT
HNVNDVFAEIVRRINIVNQKQGKRKCCNIL
Run BLAST on NCBI

transcript from alignment at sc0000053:712181..716528-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005501 ID=TCONS_00005501|Name=TCONS_00005501|organism=Clytia hemisphaerica|type=transcript|length=4348bp|location=Sequence derived from alignment at sc0000053:712181..716528- (Clytia hemisphaerica)
CTTTCCTCTCCCCAGGGTCTCAAAAGTCGGGAATCGCCGCCGCTAGTTGT
CAAGATGGGAAATATGGGTGTTTCAAGATTTTACTCTTACTTGCTCTTGT
AGGTAGGTATGTCTATGTTTTTCTTTAATTGTCTCATTTGACCTGAGTTT
TTTTTCTGTGAAATATCTGTGATTGGATATCAGCATTCATATATATTATG
ATTTTTGTTTATAAACAATAAAAAGGAAAGTTTTCAACAAATATATTGTG
TACCATTTCCAGAATGGTAGGTTTAGGTTGTCACACACAAAATTAGTTAA
CCCCCTCCTCAAGACAGAGAGTTATTACATTCAGGTAGCCCATGATTGTA
CCTCTGATAGACCCGATACCGATAGTCTCTGATCTCAAGTAAGACACAAA
GTATCCTCAAAATGCACCAGAGGTGATATATATGGCTGGTGAGTGTCCTG
GGCTTTTTCTGACAGTCTAGACAGTGTGCGAGAAGTTTATATTGAAATCT
GCAACAAAAATGAAAGTGGTCTCTTCTACTGATTGCTTCCCAGTGCTCCT
TTGCAGCCCCGGGGGGGGGGTACTAGGGTTGCGAGCTGACGGGGGGTGCC
ACCCGACTTTTGAACTTTGGACCCTTACCGGGACTAAAAAGGAGAAAACA
AAGGAAAATTTTGGGAATTTTGCGACCCTTAGCGGGACTAATTTGACCAA
TTTCGCCCAAATTTCGATCTTTCAGGGGGTAAAAAGTTGAAATTTTCCTA
TTTTTCCTACCCTTAGTAGGACTGAAATTTGATTTTCTGATTTTTCCGAC
CCTTAGCGGGACTAATTTGACCAATTTCGACCAAATTTCGATCTTTCAGG
GGGTAAAAAGTTGAAATTTTCCTATTTTTCCGACCCTTAGTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCCCCGGGTTTGCAGCTGT
TTATCAAAATTATTCCATCAATGAGTATAGTTTGCCGCAGCGCCCTTCTT
TTTGGCACCCATGGCCTCTCTCAGTGCCTTGCACGACGGGCGGCTGTAAA
ATCCCACCCTTCATATATTTGTTTCAATCCATGATCCGTGGCTTAGGTAT
TTTCTCATCTTCAAATTACTGAAGAAAGCGGGAATTTGATCCAAGAGTTA
GACTGTCAACAAAGTTTCGAAAAAAATCATTGAATAAAAGAAGAACTTAA
AATCTTAGATATTTTCATTTTGAAGAATAGGTGCAAAAAAGTGAAACATA
GAAAAGTTTCATTTGTCATTGCTTTAATCAAAATGGGGGATTTGGAAAAT
TTTCTATGTTTAGTTTTTTGCACAAACCTCTGTAACTATGGGTGAGCACC
CCGTTGCGTTGCTAAGATGTTGGCTTGAAATAGAAAATGAAACTACTCAA
AACGAAAGTAAAATTGGCCCGTACCTAAAATCCCGACATTTTGATATACG
AGGTGTTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTG
ACCAAAACAATCGAGCATTTTTACAAAATGCCCTCTACTAAATGGCACTG
TCATCATTTGACAATCAAACAAAGGATTTTCTGTCATGAACCTTGTAAAG
ATTCCAGCAACTTACATTGAAATGATCTGCTGCAGCTAAGTTCTACCACT
TTGCGCAGTTTGAGGATCAAGCAAAGTTAACAAAAAGCCTTTTCCCCTGC
AGAACACCCGTTAGCTCTCGCAAGGACGGACAAACTTTAATCTGTGAATC
ATTTTCTCAAGTGAAGAGTATGCAGAGCGATTCTAGCTTTACGATAGTGT
AAACTTAAAAAAACTGATTTTTGTCCCGCTTTTGCCAGACCTTAGCTTTA
AAGTACTTGCGCTAAAGTTCAAATATGCGTTTCCTGTAAATCTTATAGGA
CTAGTTAGGGCTATACTATAGGTATATATTATGTTGTATATTGGTCTAAT
GTCAATACTCCTCAATTCAAGATGACAGATGGAAAGGTGAAAAGGTCCAT
TCCCTGACTTTGCACCATAATGATTGCAAATGTACTTTTTTAGGGACGCT
GTGTGGAAAGGCCTATTTAAGAAATATGAAATGCAGTAAGATGGGGTCAT
TATACCTGGATGTATAAGATGTCATAAGAAAATCCCACAATATCAAAATG
TCATTATTCATATTATTTATTTTAGCAAAAGGACTAAAAAATTTTATTGG
TGTTTAAACAGCCTGCATCTGATGAACAAATCATGAAGGAATACAAAGTT
GTTGTTCTTGGTTCTGGTGGTGTTGGTAAAAGTGCATTAACAGTTCAATT
TGTATCAAATCAATTCTTGGAAAAGTATGATCCAACCATTGAGGACTTTT
ATAGAAAAGCTATTGAAGTAGATCATTCGCCCTCCATATTGGAAATCTTA
GATACTGCAGGAACTGAACAATTTGCCTCAATGAGAGATTTGTATATTAA
AAACGGGCAAGGATTTTTGCTTGTGTACTCCATTACCAATAAACAAACAT
TGCAAGATGTGGCACCTATGAGAGACCAAATAGTACGTTTGAAAGGCCAG
GAAAATGTTCCAATGATTTTAGTAGGAAATAAACGAGACATTTATGATGA
ACGTGAAGTAACACAGGAAGAAGGTGAACAACTGGCAGAGCGTTGGCGAT
GTCCATTTTTTGAGACATCAGCCAAAACAACCCATAACGTCAATGATGTA
TTTGCTGAGATTGTACGACGTATTAATATTGTCAATCAAAAACAAGGTAA
ACGAAAATGCTGCAATATTCTATAGATTATATTATGTTTCACTAAATTAT
TAGATACGTTTTAACAATACTCAAAATGAATGGTATATATATATCATGTT
TTCTTTGGATATGAGTGAGAATGGTTATTCAATGGCTCCTATTCTATGTA
TTGGATCAACCTTTAAATTTGAAATACTGGGCTTTGCAAAAGCCCTATAG
ATTACGCAACAAAATGTATTTTAGATGGTAGAATATTGTGACAACAGAGA
TTATTGATATAGTTTTAAAAAAATGATAATATACAAACGATAATGTGTAC
TTTTAGATCATGTTACTATTTGATGATAGTTTGAACTGTCACATAAAAAT
TGATAAACAAAAGGATATTATGTATGGTAGATCATGGACAGTTTACATAT
GAATAAAATGATCCTTTTTGTTTTCTGGCTTTGGCTGATTTTAGTCTCTT
ATTATGTAATTAGATGACACATTGCCTTGCTAGATGACACATTGCCTTGC
TAAAAGTGATTAGGATGTAATTGTTTTCTCTTTTAAAAAGGAAAAGACCG
TGCATCAATTCATTCTTGTCAAAATAAATGATTTAATTGATAAATTGACA
GAATGCCACTTTGAAATTCCTTTTGTCACAAGTGTTGTGGTTTGTTGTAC
AAATAAAACAAGCTTTTATCTATTTTTTTGCTTTTAACTCAAGACCATCA
AAAGAATGATAAAACCTTAAATATCTAAGAGATTTGCTATAAGCTTAATT
CATGATAGAAGCTTCTTTCATTTCGTCTAACTTTTTTATTTATTTTTCTA
TTAGATCAATATAAAATAGCATCATACACACTTTCTTCCATTTATGAAAT
ATTTTTTGCCAGGCTTCTATGTTTAATTTGAAAAATCATCGTTATCTACA
CGAAGGCTATTTTTCATGTTTTATAATGAAAATTTTGTGGCCACAATATT
AAGATAAACTTTAAGGGAAAAAAAAACTTCAATTGTACACGAAATTCAGA
CTTTTATCTTATAGCAATTTTTTACTTTTCCCTTTCTCACACAAGGTTCA
CCTATTTCCCTCTCTCCCTAGTGTTTGACACAAAGTCGGAGTCAAAACAA
GACATTTCAGAATAAAGCACCGTTTTTTGATTTTATGCCACTTTTCACCT
GCAACTGTATTTTATTAATTTTTGTATATTTTTTTCTGAAACAGTATTTT
ATTAAAATATATAATCAGAATTTCTCTCTTATAAAATACTTTTAAATGAT
CTTCGATTTTTTGTTGTTTTATTGAATAATTTTTTTTGTTTTTATGAAAT
ACTATCACTTTTAAGAAATCGTTCTTCATAAATTTGGACCCGTCCCCCAT
TAAGATTTTGGGAGCACTACACTATTTTAGATTTTCTGAAGATTTTTC

Coding sequence (CDS) from alignment at sc0000053:712181..716528-

>TCONS_00005501 ID=TCONS_00005501|Name=TCONS_00005501|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000053:712181..716528- (Clytia hemisphaerica)
ATGAAGGAATACAAAGTTGTTGTTCTTGGTTCTGGTGGTGTTGGTAAAAG
TGCATTAACAGTTCAATTTGTATCAAATCAATTCTTGGAAAAGTATGATC
CAACCATTGAGGACTTTTATAGAAAAGCTATTGAAGTAGATCATTCGCCC
TCCATATTGGAAATCTTAGATACTGCAGGAACTGAACAATTTGCCTCAAT
GAGAGATTTGTATATTAAAAACGGGCAAGGATTTTTGCTTGTGTACTCCA
TTACCAATAAACAAACATTGCAAGATGTGGCACCTATGAGAGACCAAATA
GTACGTTTGAAAGGCCAGGAAAATGTTCCAATGATTTTAGTAGGAAATAA
ACGAGACATTTATGATGAACGTGAAGTAACACAGGAAGAAGGTGAACAAC
TGGCAGAGCGTTGGCGATGTCCATTTTTTGAGACATCAGCCAAAACAACC
CATAACGTCAATGATGTATTTGCTGAGATTGTACGACGTATTAATATTGT
CAATCAAAAACAAGGTAAACGAAAATGCTGCAATATTCTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003120XLOC_003120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005501-proteinTCONS_00005501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005501-exon-sc0000053-1575043694:716427..716528TCONS_00005501-exon-sc0000053-1575043694:716427..716528Clytia hemisphaericaexon
TCONS_00005501-exon-sc0000053-1575043694:712181..714153TCONS_00005501-exon-sc0000053-1575043694:712181..714153Clytia hemisphaericaexon
TCONS_00005501-exon-sc0000053-1510915933:716427..716528TCONS_00005501-exon-sc0000053-1510915933:716427..716528Clytia hemisphaericaexon
TCONS_00005501-exon-sc0000053-1510915933:712181..714153TCONS_00005501-exon-sc0000053-1510915933:712181..714153Clytia hemisphaericaexon
TCONS_00005501-exon-sc0000053-1491911889:716427..716528TCONS_00005501-exon-sc0000053-1491911889:716427..716528Clytia hemisphaericaexon
TCONS_00005501-exon-sc0000053-1491911889:712181..714153TCONS_00005501-exon-sc0000053-1491911889:712181..714153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:712181..716528 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.0357	21.581	37.6848	39.1699	70.1246	44.6549	40.9679	41.0311	22.8148	26.0173	17.9719	16.1065	17.4245	14.1166	15.989	15.4088	23.3788	24.2697	14.6327	20.6629	37.5912	38.7344	47.2834	48.021	14.4321	16.6697	88.9914	74.6089	87.9692	97.6663
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00005501 vs. Swiss-Prot (Human)
Match: RAP2B (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 8.024e-75
Identity = 128/183 (69.95%), Postives = 150/183 (81.97%), Query Frame = 1 
Query:  160 MKEYXXXXXXXXXXXXXALTVQFVSNQFLEKYDPTIEDFYRKAIEVDHSPSILEILDTAGTEQFASMRDLYIKNGQGFLLVYSITNKQTLQDVAPMRDQIVRLKGQENVPMILVGNKRDIYDEREVTQEEGEQLAERWRCPFFETSAKTTHNVNDVFAEIVRRINIVNQKQGKRKCCNIL*II 708
            M+EYKVVVLGSGGVGKSALTVQFV+  F+EKYDPTIEDFYRK IEVD SPS+LEILDTAGTEQFASMRDLYIKNGQGF+LVYS+ N+Q+ QD+ PMRDQI+R+K  E VPMILVGNK D+  EREV+  EG+ LAE W CPF ETSAK   +V+++FAEIVR++N   Q  G   CC+   I+
Sbjct:    1 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSACVIL 183
The following BLAST results are available for this feature:
BLAST of TCONS_00005501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAP2B8.024e-7569.95Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
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